Atom Nomenclature for CHQ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for CHQ

Atom Name (V3) Atom Name (V2)
N N
CA CA
C C
O O
CB CB
ND1 ND1
CE1 CE1
NE2 NE2
CD2 CD2
CG CG
NP NP
CAP CAP
CP CP
OP OP
CBP CBP
CGP CGP
CDP CDP
H H
HA HA
HBC1 1HBC
HBC2 2HBC
HD1 HD1
HE1 HE1
HD2 HD2
HAP HAP
HBP1 1HBP
HBP2 2HBP
HGP1 1HGP
HGP2 2HGP
HDP1 1HDP
HDP2 2HDP