PDB Chemical Component CH6
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CH6
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CE |
SD |
1.801 |
1.815 |
| SD |
CG1 |
1.802 |
1.813 |
| CG1 |
CB1 |
1.519 |
1.530 |
| OH |
CZ |
1.245 |
1.357 |
| CB1 |
CA1 |
1.539 |
1.530 |
| OXT |
C3 |
1.309 |
1.342 |
| CE1 |
CZ |
1.466 |
1.391 |
| CE1 |
CD1 |
1.359 |
1.371 |
| CZ |
CE2 |
1.451 |
1.391 |
| CD1 |
CG2 |
1.432 |
1.402 |
| CA1 |
C1 |
1.493 |
1.507 |
| CA1 |
N1 |
1.580 |
1.470 |
| CE2 |
CD2 |
1.357 |
1.371 |
| N2 |
C1 |
1.327 |
1.297 |
| N2 |
CA2 |
1.403 |
1.367 |
| C1 |
N3 |
1.430 |
1.366 |
| CG2 |
CD2 |
1.430 |
1.403 |
| CG2 |
CB2 |
1.387 |
1.465 |
| C3 |
O3 |
1.223 |
1.208 |
| C3 |
CA3 |
1.510 |
1.508 |
| CA2 |
CB2 |
1.368 |
1.378 |
| CA2 |
C2 |
1.488 |
1.474 |
| N3 |
C2 |
1.434 |
1.351 |
| N3 |
CA3 |
1.408 |
1.465 |
| C2 |
O2 |
1.233 |
1.218 |
| N1 |
H |
1.000 |
1.009 |
| N1 |
H2 |
1.001 |
1.009 |
| CE |
HE1A |
1.100 |
1.090 |
| CE |
HE2A |
1.100 |
1.090 |
| CE |
HE3 |
1.100 |
1.090 |
| CG1 |
HG11 |
1.099 |
1.090 |
| CG1 |
HG12 |
1.100 |
1.090 |
| CB1 |
HB11 |
1.100 |
1.090 |
| CB1 |
HB12 |
1.100 |
1.090 |
| CA1 |
HA1 |
1.100 |
1.089 |
| OH |
HOH |
0.950 |
0.967 |
| CD2 |
HD2 |
1.080 |
1.080 |
| CE2 |
HE2 |
1.080 |
1.080 |
| CE1 |
HE1 |
1.080 |
1.080 |
| CD1 |
HD1 |
1.079 |
1.080 |
| CB2 |
HB2 |
1.080 |
1.080 |
| CA3 |
HA31 |
1.100 |
1.089 |
| CA3 |
HA32 |
1.100 |
1.091 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for CH6
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CE |
SD |
CG1 |
99.3 |
103.0 |
| SD |
CE |
HE1A |
109.5 |
109.5 |
| SD |
CE |
HE2A |
109.5 |
109.5 |
| SD |
CE |
HE3 |
109.5 |
109.4 |
| SD |
CG1 |
CB1 |
112.4 |
109.5 |
| SD |
CG1 |
HG11 |
108.5 |
109.5 |
| SD |
CG1 |
HG12 |
107.9 |
109.5 |
| CG1 |
CB1 |
CA1 |
107.8 |
109.5 |
| CB1 |
CG1 |
HG11 |
108.5 |
109.5 |
| CB1 |
CG1 |
HG12 |
107.8 |
109.4 |
| CG1 |
CB1 |
HB11 |
110.0 |
109.5 |
| CG1 |
CB1 |
HB12 |
110.4 |
109.4 |
| OH |
CZ |
CE2 |
123.4 |
119.8 |
| CZ |
OH |
HOH |
109.5 |
114.0 |
| CB1 |
CA1 |
C1 |
128.4 |
109.5 |
| CA1 |
CB1 |
HB11 |
110.0 |
109.5 |
| CA1 |
CB1 |
HB12 |
110.4 |
109.5 |
| CB1 |
CA1 |
HA1 |
104.8 |
109.5 |
| CE1 |
CD1 |
CG2 |
121.9 |
119.9 |
| CD1 |
CE1 |
HE1 |
119.2 |
119.9 |
| CE1 |
CD1 |
HD1 |
119.0 |
120.1 |
| CZ |
CE2 |
HE2 |
118.9 |
120.0 |
| CD1 |
CG2 |
CB2 |
117.8 |
120.1 |
| CG2 |
CD1 |
HD1 |
119.0 |
120.1 |
| CA1 |
C1 |
N3 |
122.2 |
124.4 |
| C1 |
CA1 |
HA1 |
91.9 |
109.5 |
| CA1 |
N1 |
H |
109.5 |
111.0 |
| CA1 |
N1 |
H2 |
109.5 |
111.0 |
| CE2 |
CD2 |
HD2 |
119.1 |
120.1 |
| N2 |
C1 |
N3 |
113.2 |
111.3 |
| N2 |
CA2 |
CB2 |
128.5 |
127.1 |
| N2 |
CA2 |
C2 |
109.2 |
105.8 |
| C1 |
N3 |
C2 |
106.1 |
108.4 |
| C1 |
N3 |
CA3 |
124.7 |
125.8 |
| CG2 |
CD2 |
HD2 |
119.0 |
120.0 |
| CG2 |
CB2 |
HB2 |
115.4 |
120.0 |
| C3 |
CA3 |
HA31 |
106.6 |
109.5 |
| C3 |
CA3 |
HA32 |
104.6 |
109.4 |
| CA2 |
CB2 |
HB2 |
115.4 |
120.0 |
| CA2 |
C2 |
O2 |
130.7 |
127.3 |
| N3 |
CA3 |
HA31 |
106.6 |
109.5 |
| N3 |
CA3 |
HA32 |
104.6 |
109.5 |
| H |
N1 |
H2 |
109.5 |
111.0 |
| HE1A |
CE |
HE2A |
109.5 |
109.5 |
| HE1A |
CE |
HE3 |
109.5 |
109.5 |
| HE2A |
CE |
HE3 |
109.5 |
109.5 |
| HG11 |
CG1 |
HG12 |
111.8 |
109.5 |
| HB11 |
CB1 |
HB12 |
108.2 |
109.5 |
| HA31 |
CA3 |
HA32 |
116.7 |
109.5 |
Torsion Angles for CH6
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CE |
SD |
CG1 |
CB1 |
186.8 |
180.0 |
| CE |
SD |
CG1 |
HG11 |
306.8 |
300.0 |
| CE |
SD |
CG1 |
HG12 |
68.1 |
60.0 |
| HE1A |
CE |
SD |
HE2A |
240.0 |
240.0 |
| HE1A |
CE |
SD |
HE3 |
120.0 |
120.0 |
| HE2A |
CE |
SD |
HE3 |
240.0 |
240.0 |
| CG1 |
SD |
CE |
HE1A |
25.0 |
180.0 |
| CG1 |
SD |
CE |
HE2A |
145.0 |
300.0 |
| CG1 |
SD |
CE |
HE3 |
265.0 |
60.0 |
| SD |
CG1 |
CB1 |
CA1 |
209.1 |
180.0 |
| CB1 |
CG1 |
SD |
HG11 |
240.0 |
240.0 |
| CB1 |
CG1 |
SD |
HG12 |
118.7 |
120.0 |
| SD |
CG1 |
CB1 |
HB11 |
329.1 |
300.0 |
| SD |
CG1 |
CB1 |
HB12 |
88.5 |
60.0 |
| HG11 |
CG1 |
SD |
HG12 |
238.7 |
240.0 |
| SD |
CG1 |
CB1 |
HG11 |
120.0 |
120.0 |
| SD |
CG1 |
CB1 |
HG12 |
241.2 |
240.0 |
| CG1 |
CB1 |
CA1 |
C1 |
156.3 |
175.0 |
| CA1 |
CB1 |
CG1 |
HB11 |
240.0 |
240.0 |
| CA1 |
CB1 |
CG1 |
HB12 |
120.6 |
120.0 |
| CG1 |
CB1 |
CA1 |
HA1 |
51.6 |
55.0 |
| HG11 |
CG1 |
CB1 |
HG12 |
121.3 |
120.0 |
| HB11 |
CB1 |
CG1 |
HB12 |
240.6 |
240.0 |
| OH |
CZ |
CE2 |
HE2 |
357.1 |
0.1 |
| CA1 |
CB1 |
CG1 |
HG11 |
89.1 |
60.0 |
| CA1 |
CB1 |
CG1 |
HG12 |
327.9 |
300.0 |
| CG1 |
CB1 |
CA1 |
HB11 |
120.0 |
120.0 |
| CG1 |
CB1 |
CA1 |
HB12 |
239.3 |
240.0 |
| CB1 |
CA1 |
C1 |
N3 |
187.3 |
265.0 |
| C1 |
CA1 |
CB1 |
HA1 |
104.7 |
120.0 |
| CB1 |
CA1 |
N1 |
H |
30.6 |
176.1 |
| CB1 |
CA1 |
N1 |
H2 |
150.6 |
300.0 |
| HB11 |
CB1 |
CA1 |
HB12 |
119.3 |
120.0 |
| OXT |
C3 |
CA3 |
HA31 |
88.2 |
60.0 |
| OXT |
C3 |
CA3 |
HA32 |
212.4 |
300.0 |
| CE1 |
CZ |
OH |
HOH |
289.1 |
270.1 |
| CE1 |
CZ |
CE2 |
HE2 |
178.6 |
180.0 |
| CE1 |
CD1 |
CG2 |
CB2 |
180.6 |
180.0 |
| CG2 |
CD1 |
CE1 |
HD1 |
180.0 |
179.8 |
| CE2 |
CZ |
OH |
HOH |
110.8 |
90.1 |
| CZ |
CE2 |
CD2 |
HD2 |
180.2 |
180.0 |
| CG2 |
CD1 |
CE1 |
HE1 |
180.8 |
179.8 |
| CE1 |
CD1 |
CG2 |
HD1 |
180.0 |
180.2 |
| CD1 |
CG2 |
CD2 |
HD2 |
181.6 |
179.8 |
| CD1 |
CG2 |
CB2 |
HB2 |
179.2 |
353.9 |
| C1 |
CA1 |
CB1 |
HB11 |
36.3 |
55.0 |
| C1 |
CA1 |
CB1 |
HB12 |
276.9 |
295.0 |
| CB1 |
CA1 |
C1 |
HA1 |
249.3 |
239.9 |
| C1 |
CA1 |
N1 |
H |
167.6 |
296.1 |
| C1 |
CA1 |
N1 |
H2 |
287.7 |
60.0 |
| N2 |
C1 |
CA1 |
N3 |
177.3 |
180.4 |
| CA1 |
C1 |
N3 |
C2 |
181.8 |
179.8 |
| CA1 |
C1 |
N3 |
CA3 |
348.3 |
0.0 |
| H |
N1 |
CA1 |
H2 |
240.0 |
236.1 |
| OH |
CZ |
CE2 |
CD2 |
177.1 |
180.0 |
| CG2 |
CD2 |
CE2 |
HD2 |
180.0 |
180.3 |
| CA1 |
C1 |
N2 |
N3 |
182.5 |
179.7 |
| N2 |
C1 |
CA1 |
HA1 |
115.2 |
205.4 |
| N2 |
C1 |
N3 |
C2 |
4.3 |
359.5 |
| N2 |
C1 |
N3 |
CA3 |
170.8 |
179.7 |
| CA2 |
N2 |
C1 |
N3 |
355.1 |
0.3 |
| N2 |
CA2 |
CB2 |
HB2 |
181.6 |
185.0 |
| N2 |
CA2 |
C2 |
O2 |
176.2 |
180.0 |
| N3 |
C1 |
CA1 |
HA1 |
298.0 |
25.0 |
| C1 |
N3 |
CA3 |
HA31 |
357.3 |
210.0 |
| C1 |
N3 |
CA3 |
HA32 |
233.1 |
330.0 |
| CE2 |
CD2 |
CG2 |
HD2 |
180.0 |
179.7 |
| CB2 |
CG2 |
CD1 |
HD1 |
0.6 |
359.8 |
| N2 |
CA2 |
CB2 |
CG2 |
1.6 |
5.1 |
| CB2 |
CG2 |
CD2 |
HD2 |
358.7 |
0.3 |
| CA2 |
CB2 |
CG2 |
HB2 |
180.0 |
180.0 |
| O3 |
C3 |
CA3 |
HA31 |
271.0 |
240.0 |
| O3 |
C3 |
CA3 |
HA32 |
35.2 |
120.0 |
| N3 |
CA3 |
C3 |
HA31 |
240.0 |
120.0 |
| N3 |
CA3 |
C3 |
HA32 |
115.8 |
240.0 |
| HA31 |
CA3 |
C3 |
HA32 |
235.8 |
120.0 |
| N2 |
CA2 |
CB2 |
C2 |
182.3 |
180.0 |
| CG2 |
CB2 |
CA2 |
HB2 |
180.0 |
180.0 |
| N2 |
CA2 |
C2 |
CB2 |
178.1 |
180.0 |
| C1 |
N3 |
C2 |
CA2 |
358.2 |
0.4 |
| C2 |
CA2 |
CB2 |
HB2 |
359.2 |
5.0 |
| C1 |
N3 |
C2 |
CA3 |
166.0 |
180.2 |
| C1 |
N3 |
CA3 |
C2 |
196.5 |
179.8 |
| C3 |
CA3 |
N3 |
HA31 |
120.0 |
240.0 |
| C3 |
CA3 |
N3 |
HA32 |
244.2 |
120.0 |
| HA31 |
CA3 |
N3 |
HA32 |
124.2 |
240.0 |
| C1 |
N3 |
C2 |
O2 |
180.9 |
180.2 |
| CA1 |
N1 |
H |
H2 |
120.0 |
123.9 |
| CA1 |
N1 |
H2 |
H |
240.0 |
236.1 |
| HE1A |
CE |
SD |
CG1 |
25.0 |
180.0 |
| SD |
CE |
HE1A |
HE2A |
120.0 |
120.0 |
| SD |
CE |
HE1A |
HE3 |
240.0 |
240.0 |
| HE2A |
CE |
HE1A |
HE3 |
120.0 |
120.0 |
| HE2A |
CE |
SD |
CG1 |
145.0 |
300.0 |
| SD |
CE |
HE2A |
HE1A |
240.0 |
240.0 |
| SD |
CE |
HE2A |
HE3 |
120.0 |
120.0 |
| HE1A |
CE |
HE2A |
HE3 |
240.0 |
240.0 |
| HE3 |
CE |
SD |
CG1 |
265.0 |
60.0 |
| SD |
CE |
HE3 |
HE1A |
120.0 |
120.0 |
| SD |
CE |
HE3 |
HE2A |
240.0 |
240.0 |
| HE1A |
CE |
HE3 |
HE2A |
120.0 |
120.0 |
| SD |
CG1 |
HG11 |
CB1 |
237.6 |
240.0 |
| SD |
CG1 |
HG11 |
HG12 |
118.8 |
120.0 |
| HG11 |
CG1 |
CB1 |
CA1 |
89.1 |
60.0 |
| CB1 |
CG1 |
HG11 |
HG12 |
241.2 |
240.0 |
| HG11 |
CG1 |
CB1 |
HB11 |
209.2 |
180.0 |
| HG11 |
CG1 |
CB1 |
HB12 |
328.5 |
300.0 |
| SD |
CG1 |
HG12 |
CB1 |
121.6 |
120.0 |
| SD |
CG1 |
HG12 |
HG11 |
240.8 |
240.0 |
| HG12 |
CG1 |
CB1 |
CA1 |
327.9 |
300.0 |
| CB1 |
CG1 |
HG12 |
HG11 |
119.2 |
120.0 |
| HG12 |
CG1 |
CB1 |
HB11 |
87.9 |
60.0 |
| HG12 |
CG1 |
CB1 |
HB12 |
207.2 |
180.0 |
| CG1 |
CB1 |
HB11 |
CA1 |
241.3 |
240.0 |
| HB11 |
CB1 |
CG1 |
HG11 |
209.2 |
180.0 |
| HB11 |
CB1 |
CG1 |
HG12 |
87.9 |
60.0 |
| CG1 |
CB1 |
HB11 |
HB12 |
120.7 |
120.0 |
| HB11 |
CB1 |
CA1 |
C1 |
36.3 |
55.0 |
| CA1 |
CB1 |
HB11 |
HB12 |
239.3 |
239.9 |
| HB11 |
CB1 |
CA1 |
HA1 |
291.6 |
295.0 |
| CG1 |
CB1 |
HB12 |
CA1 |
119.1 |
120.0 |
| HB12 |
CB1 |
CG1 |
HG11 |
328.5 |
300.0 |
| HB12 |
CB1 |
CG1 |
HG12 |
207.2 |
180.0 |
| CG1 |
CB1 |
HB12 |
HB11 |
239.5 |
240.0 |
| HB12 |
CB1 |
CA1 |
C1 |
276.9 |
295.0 |
| CA1 |
CB1 |
HB12 |
HB11 |
120.4 |
120.0 |
| HB12 |
CB1 |
CA1 |
HA1 |
172.2 |
174.9 |
| CB1 |
CA1 |
HA1 |
C1 |
130.7 |
120.0 |
| HA1 |
CA1 |
CB1 |
HB11 |
291.6 |
295.0 |
| HA1 |
CA1 |
CB1 |
HB12 |
172.2 |
174.9 |
| HA1 |
CA1 |
C1 |
N3 |
298.0 |
25.0 |
| HA1 |
CA1 |
N1 |
H |
275.3 |
56.0 |
| HA1 |
CA1 |
N1 |
H2 |
35.3 |
180.0 |
| HOH |
OH |
CZ |
CE2 |
110.8 |
90.1 |
| HE2 |
CE2 |
CD2 |
HD2 |
0.2 |
359.9 |
| HE1 |
CE1 |
CD1 |
CG2 |
180.8 |
179.8 |
| HE1 |
CE1 |
CD1 |
HD1 |
0.8 |
360.0 |
| CE1 |
CD1 |
HD1 |
CG2 |
180.0 |
179.8 |
| HD1 |
CD1 |
CE1 |
HE1 |
0.8 |
360.0 |
| HD1 |
CD1 |
CG2 |
CB2 |
0.6 |
359.8 |
| C3 |
CA3 |
HA31 |
HA32 |
116.4 |
240.0 |
| N3 |
CA3 |
HA31 |
HA32 |
243.7 |
120.0 |
| C3 |
CA3 |
HA32 |
HA31 |
242.5 |
120.0 |
| N3 |
CA3 |
HA32 |
HA31 |
117.5 |
240.0 |