PDB Chemical Component CH5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CH5

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.537	1.531
C1	O3P	1.480	1.429
C1	H11	1.116	1.090
C1	H12	1.115	1.090
C2	C3	1.551	1.530
C2	O2	1.515	1.429
C2	H2	1.115	1.089
C3	O3	1.479	1.429
C3	H31	1.115	1.091
C3	H32	1.115	1.089
C4	C5	1.566	1.530
C4	O4P	1.491	1.429
C4	H41	1.115	1.090
C4	H42	1.115	1.091
C5	N	1.543	1.468
C5	H51	1.115	1.089
C5	H52	1.115	1.090
C6	N	1.490	1.469
C6	H61	1.116	1.090
C6	H62	1.116	1.090
C6	H63	1.114	1.090
C7	N	1.450	1.469
C7	H71	1.116	1.090
C7	H72	1.115	1.090
C7	H73	1.115	1.090
C8	N	1.473	1.469
C8	H81	1.116	1.090
C8	H82	1.114	1.090
C8	H83	1.114	1.090
O2	HO2	0.950	0.967
O3	HO3	0.950	0.967
O1P	P	1.562	1.480
O2P	P	1.543	1.610
O2P	H2P	0.950	0.966
O3P	P	1.589	1.610
O4P	P	1.577	1.610

Bond Angles for CH5

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O3P	111.5	109.5
C2	C1	H11	111.4	109.5
C2	C1	H12	111.5	109.5
C1	C2	C3	115.0	109.5
C1	C2	O2	108.0	109.4
C1	C2	H2	107.5	109.5
O3P	C1	H11	111.5	109.5
O3P	C1	H12	111.5	109.5
C1	O3P	P	115.7	106.8
H11	C1	H12	98.9	109.5
C3	C2	O2	111.8	109.5
C3	C2	H2	103.3	109.5
C2	C3	O3	116.2	109.5
C2	C3	H31	109.8	109.5
C2	C3	H32	109.8	109.5
O2	C2	H2	111.0	109.5
C2	O2	HO2	108.1	106.8
O3	C3	H31	109.7	109.4
O3	C3	H32	109.7	109.5
C3	O3	HO3	116.2	106.8
H31	C3	H32	100.4	109.5
C5	C4	O4P	108.9	109.5
C5	C4	H41	112.4	109.5
C5	C4	H42	112.4	109.5
C4	C5	N	121.5	109.5
C4	C5	H51	107.9	109.4
C4	C5	H52	107.9	109.4
O4P	C4	H41	112.5	109.5
O4P	C4	H42	112.4	109.4
C4	O4P	P	114.5	106.8
H41	C4	H42	98.0	109.5
N	C5	H51	107.9	109.5
N	C5	H52	107.9	109.5
C5	N	C6	115.0	109.5
C5	N	C7	108.5	109.5
C5	N	C8	109.8	109.5
H51	C5	H52	101.9	109.5
N	C6	H61	114.9	109.5
N	C6	H62	110.2	109.5
N	C6	H63	110.2	109.5
C6	N	C7	107.9	109.4
C6	N	C8	109.5	109.4
H61	C6	H62	110.2	109.4
H61	C6	H63	110.3	109.5
H62	C6	H63	100.0	109.4
N	C7	H71	108.6	109.5
N	C7	H72	112.6	109.4
N	C7	H73	112.6	109.4
C7	N	C8	105.7	109.4
H71	C7	H72	112.5	109.5
H71	C7	H73	112.5	109.5
H72	C7	H73	97.9	109.5
N	C8	H81	109.8	109.5
N	C8	H82	112.1	109.4
N	C8	H83	112.1	109.5
H81	C8	H82	112.1	109.4
H81	C8	H83	112.0	109.5
H82	C8	H83	98.4	109.5
O1P	P	O2P	108.8	109.5
O1P	P	O3P	108.9	109.5
O1P	P	O4P	108.2	109.5
P	O2P	H2P	108.9	106.9
O2P	P	O3P	109.9	109.4
O2P	P	O4P	108.3	109.5
O3P	P	O4P	112.6	109.5

Torsion Angles for CH5

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O3P	C1	C2	H11	234.8	120.0
O3P	C1	C2	H12	125.3	240.0
C2	C1	O3P	P	121.5	180.0
H11	C1	C2	H12	250.5	120.0
C3	C2	C1	O2	234.4	240.0
C3	C2	C1	H2	114.5	120.0
C1	C2	C3	O3	123.7	185.0
C1	C2	C3	H31	248.9	304.9
C1	C2	C3	H32	358.4	65.0
O2	C2	C1	H2	240.1	240.0
C1	C2	O2	HO2	180.0	300.0
C2	C1	O3P	H11	125.2	240.0
C2	C1	O3P	H12	234.7	120.0
O3P	C1	C2	C3	218.8	175.0
O3P	C1	C2	O2	344.4	295.0
O3P	C1	C2	H2	104.3	55.0
H11	C1	O3P	H12	109.5	240.0
O1P	P	O3P	C1	302.4	305.0
O2P	P	O3P	C1	61.5	65.0
C1	O3P	P	O4P	182.4	185.0
C2	C1	H11	O3P	234.7	120.0
C2	C1	H11	H12	117.4	240.0
H11	C1	C2	C3	344.0	55.0
H11	C1	C2	O2	109.7	175.0
H11	C1	C2	H2	229.6	295.0
O3P	C1	H11	H12	242.6	120.1
H11	C1	O3P	P	356.3	299.9
C2	C1	H12	O3P	125.3	240.0
C2	C1	H12	H11	242.7	120.0
H12	C1	C2	C3	93.5	295.0
H12	C1	C2	O2	219.1	55.0
H12	C1	C2	H2	339.0	175.0
O3P	C1	H12	H11	117.4	240.0
H12	C1	O3P	P	246.8	60.0
C3	C2	C1	O3P	218.8	175.0
C3	C2	C1	H11	344.0	55.0
C3	C2	C1	H12	93.5	295.0
C1	C2	C3	O2	123.7	119.9
C1	C2	C3	H2	243.1	240.0
O2	C2	C3	H2	119.5	120.1
C3	C2	O2	HO2	307.6	59.9
O3	C3	C2	H31	234.8	240.1
O3	C3	C2	H32	125.3	120.0
C2	C3	O3	HO3	180.0	180.0
H31	C3	C2	H32	250.5	240.0
O2	C2	C1	O3P	344.4	295.0
O2	C2	C1	H11	109.7	175.0
O2	C2	C1	H12	219.1	55.0
C1	C2	O2	C3	232.5	240.0
C1	C2	O2	H2	117.7	120.0
C3	C2	O2	H2	245.2	239.9
O2	C2	C3	O3	360.0	65.1
O2	C2	C3	H31	125.2	185.0
O2	C2	C3	H32	234.7	305.1
H2	C2	C1	O3P	104.3	55.0
H2	C2	C1	H11	229.6	295.0
H2	C2	C1	H12	339.0	175.0
C1	C2	H2	C3	122.0	120.0
C1	C2	H2	O2	242.0	240.0
C3	C2	H2	O2	120.0	120.0
H2	C2	C3	O3	240.5	305.0
H2	C2	C3	H31	5.8	64.9
H2	C2	C3	H32	115.3	185.0
H2	C2	O2	HO2	62.4	180.0
O3	C3	C2	O2	360.0	65.1
O3	C3	C2	H2	240.5	305.0
C2	C3	O3	H31	125.3	120.0
C2	C3	O3	H32	234.7	239.9
H31	C3	O3	H32	109.4	120.0
H31	C3	C2	O2	125.2	185.0
H31	C3	C2	H2	5.8	64.9
C2	C3	H31	O3	231.1	240.0
C2	C3	H31	H32	115.6	120.1
O3	C3	H31	H32	244.5	240.0
H31	C3	O3	HO3	54.7	60.0
H32	C3	C2	O2	234.7	305.1
H32	C3	C2	H2	115.3	185.0
C2	C3	H32	O3	128.9	120.0
C2	C3	H32	H31	244.4	240.0
O3	C3	H32	H31	115.5	119.9
H32	C3	O3	HO3	305.3	300.0
O4P	C4	C5	H41	234.7	240.0
O4P	C4	C5	H42	125.3	119.9
C5	C4	O4P	P	260.9	180.0
H41	C4	C5	H42	250.6	240.0
N	C5	C4	H51	234.7	120.0
N	C5	C4	H52	125.3	240.0
C4	C5	N	C6	329.7	55.2
C4	C5	N	C7	208.7	295.2
C4	C5	N	C8	93.6	175.2
H51	C5	C4	H52	250.6	120.0
C5	C4	O4P	H41	125.3	120.1
C5	C4	O4P	H42	234.8	240.0
O4P	C4	C5	N	180.3	67.6
O4P	C4	C5	H51	305.6	307.6
O4P	C4	C5	H52	55.1	187.6
H41	C4	O4P	H42	109.5	120.0
O1P	P	O4P	C4	74.0	55.0
O2P	P	O4P	C4	316.2	295.0
O3P	P	O4P	C4	194.4	175.1
C5	C4	H41	O4P	236.6	240.0
C5	C4	H41	H42	118.3	120.0
H41	C4	C5	N	305.6	187.7
H41	C4	C5	H51	70.9	67.6
H41	C4	C5	H52	180.4	307.7
O4P	C4	H41	H42	241.6	240.0
H41	C4	O4P	P	135.7	60.0
C5	C4	H42	O4P	123.3	120.0
C5	C4	H42	H41	241.7	239.9
H42	C4	C5	N	55.1	307.7
H42	C4	C5	H51	180.4	187.6
H42	C4	C5	H52	289.8	67.7
O4P	C4	H42	H41	118.4	120.0
H42	C4	O4P	P	26.1	300.0
N	C5	C4	O4P	180.3	67.6
N	C5	C4	H41	305.6	187.7
N	C5	C4	H42	55.1	307.7
C4	C5	N	H51	125.3	240.0
C4	C5	N	H52	234.7	120.0
H51	C5	N	H52	109.4	239.9
C5	N	C6	H61	180.0	300.1
C5	N	C6	H62	305.2	60.0
C5	N	C6	H63	54.7	180.0
C6	N	C5	C7	121.0	120.0
C6	N	C5	C8	236.0	240.0
C5	N	C7	H71	180.0	190.0
C5	N	C7	H72	305.3	310.1
C5	N	C7	H73	54.8	70.0
C7	N	C5	C8	115.1	120.0
C5	N	C8	H81	180.0	300.0
C5	N	C8	H82	305.2	59.9
C5	N	C8	H83	54.8	180.0
H51	C5	C4	O4P	305.6	307.6
H51	C5	C4	H41	70.9	67.6
H51	C5	C4	H42	180.4	187.6
C4	C5	H51	N	227.0	120.0
C4	C5	H51	H52	113.5	240.1
N	C5	H51	H52	246.5	120.1
H51	C5	N	C6	204.3	175.2
H51	C5	N	C7	83.4	55.2
H51	C5	N	C8	328.3	295.2
H52	C5	C4	O4P	55.1	187.6
H52	C5	C4	H41	180.4	307.7
H52	C5	C4	H42	289.8	67.7
C4	C5	H52	N	133.0	240.0
C4	C5	H52	H51	246.5	119.9
N	C5	H52	H51	113.5	239.9
H52	C5	N	C6	94.9	295.3
H52	C5	N	C7	334.0	175.3
H52	C5	N	C8	218.9	55.3
C6	N	C5	H51	204.3	175.2
C6	N	C5	H52	94.9	295.3
C5	N	C6	C7	238.7	240.0
C5	N	C6	C8	124.2	120.0
H61	C6	N	H62	234.8	240.1
H61	C6	N	H63	125.3	120.1
H62	C6	N	H63	250.5	240.0
C6	N	C7	H71	54.8	70.0
C6	N	C7	H72	180.1	190.0
C6	N	C7	H73	289.6	310.0
C7	N	C6	C8	245.4	240.1
C6	N	C8	H81	307.1	60.1
C6	N	C8	H82	72.3	180.0
C6	N	C8	H83	181.9	300.0
N	C6	H61	H62	125.2	120.0
N	C6	H61	H63	234.7	239.9
H61	C6	N	C7	301.3	60.1
H61	C6	N	C8	55.9	180.0
H62	C6	H61	H63	109.5	119.9
N	C6	H62	H61	232.1	240.0
N	C6	H62	H63	116.1	120.1
H62	C6	N	C7	66.5	180.0
H62	C6	N	C8	181.1	299.9
H61	C6	H62	H63	243.9	240.1
N	C6	H63	H61	128.0	120.1
N	C6	H63	H62	244.0	240.0
H63	C6	N	C7	176.0	300.0
H63	C6	N	C8	290.6	59.9
H61	C6	H63	H62	116.0	119.9
C7	N	C5	H51	83.4	55.2
C7	N	C5	H52	334.0	175.3
C5	N	C7	C6	125.2	120.0
C5	N	C7	C8	242.3	240.0
C7	N	C6	H61	301.3	60.1
C7	N	C6	H62	66.5	180.0
C7	N	C6	H63	176.0	300.0
C6	N	C7	C8	117.1	119.9
H71	C7	N	H72	234.7	240.0
H71	C7	N	H73	125.2	120.0
H72	C7	N	H73	250.5	240.1
C7	N	C8	H81	63.1	180.0
C7	N	C8	H82	188.4	299.9
C7	N	C8	H83	297.9	59.9
N	C7	H71	H72	125.3	120.0
N	C7	H71	H73	234.7	240.0
H71	C7	N	C8	297.7	310.1
H72	C7	H71	H73	109.4	120.0
N	C7	H72	H71	236.9	240.0
N	C7	H72	H73	118.5	119.9
H72	C7	N	C8	63.0	70.1
H71	C7	H72	H73	241.6	239.9
N	C7	H73	H71	123.1	120.0
N	C7	H73	H72	241.5	240.1
H73	C7	N	C8	172.5	190.1
H71	C7	H73	H72	118.4	120.1
C8	N	C5	H51	328.3	295.2
C8	N	C5	H52	218.9	55.3
C5	N	C8	C6	232.9	240.0
C5	N	C8	C7	116.9	120.0
C8	N	C6	H61	55.9	180.0
C8	N	C6	H62	181.1	299.9
C8	N	C6	H63	290.6	59.9
C6	N	C8	C7	244.0	240.1
C8	N	C7	H71	297.7	310.1
C8	N	C7	H72	63.0	70.1
C8	N	C7	H73	172.5	190.1
H81	C8	N	H82	234.7	240.1
H81	C8	N	H83	125.2	120.1
H82	C8	N	H83	250.5	240.0
N	C8	H81	H82	125.3	119.9
N	C8	H81	H83	234.8	239.9
H82	C8	H81	H83	109.5	120.0
N	C8	H82	H81	236.0	240.1
N	C8	H82	H83	118.0	120.1
H81	C8	H82	H83	242.0	240.0
N	C8	H83	H81	123.9	120.0
N	C8	H83	H82	242.0	240.0
H81	C8	H83	H82	118.0	120.0
HO2	O2	C2	H2	62.4	180.0
HO3	O3	C3	H31	54.7	60.0
HO3	O3	C3	H32	305.3	300.0
C1	O3P	P	O1P	302.4	305.0
C4	O4P	P	O1P	74.0	55.0
O1P	P	O2P	H2P	180.0	180.0
O2P	P	O1P	O3P	240.2	240.0
O2P	P	O1P	O4P	117.5	120.0
O3P	P	O1P	O4P	237.3	240.0
C1	O3P	P	O2P	61.5	65.0
C4	O4P	P	O2P	316.2	295.0
O1P	P	O2P	O3P	119.2	120.0
O1P	P	O2P	O4P	242.6	240.0
O3P	P	O2P	O4P	123.4	120.0
H2P	O2P	P	O3P	60.8	60.0
H2P	O2P	P	O4P	297.4	300.1
P	O3P	C1	H11	356.3	299.9
P	O3P	C1	H12	246.8	60.0
C4	O4P	P	O3P	194.4	175.1
O1P	P	O3P	O2P	240.9	240.0
O1P	P	O3P	O4P	120.0	120.0
O3P	P	O2P	H2P	60.8	60.0
O2P	P	O3P	O4P	239.1	240.0
P	O4P	C4	H41	135.7	60.0
P	O4P	C4	H42	26.1	300.0
O1P	P	O4P	O2P	117.8	120.0
O1P	P	O4P	O3P	239.6	240.0
O4P	P	O2P	H2P	297.4	300.1
O2P	P	O4P	O3P	121.8	119.9