PDB Chemical Component CH1

Ideal Model

Chemical Description

Name 3'-DEOXY-CYTIDINE-5'-TRIPHOSPHATE
Formula C9 H16 N3 O13 P3
Formal charge 0
Molecular weight 467.157 g/mol
Component type NON-POLYMER

Chemical features

Atom count 44
Chiral atom count 5
Chiral atoms C1' C2' C4' PA PB
Bond count 45
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 3'-deoxycytidine 5'-(tetrahydrogen triphosphate)
Systematic name (OpenEye OEToolkits) [(2S,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-4-hydroxy-oxolan-2-yl]methyl (hydroxy-phosphonooxy-phosphoryl) hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P@@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)C[C@H]2O
SMILES (CACTVS) NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)C[CH]2O
Stereo SMILES (OpenEye) C1[C@H](O[C@H]([C@@H]1O)N2C=CC(=NC2=O)N)CO[P@](=O)(O)O[P@](=O)(O)OP(=O)(O)O
InChI descriptor InChI=1S/C9H16N3O13P3/c10-7-1-2-12(9(14)11-7)8-6(13)3-5(23-8)4-22-27(18,19)25-28(20,21)24-26(15,16)17/h1-2,5-6,8,13H,3-4H2,(H,18,19)(H,20,21)(H2,10,11,14)(H2,15,16,17)/t5-,6+,8+/m0/s1
InChIKey descriptor CHKFLBOLYREYDO-SHYZEUOFSA-N

Status Information

Last modified 2011-06-04
Created 2002-10-24
Release status REL
Model PDB code 1N35
Processing site RCSB