PDB Chemical Component CH1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CH1

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.403 1.345
N1 C6 1.381 1.364
N1 C1' 1.524 1.465
C2 N3 1.345 1.331
C2 O2 1.254 1.220
N3 C4 1.364 1.326
C4 C5 1.403 1.410
C4 N4 1.335 1.376
C5 C6 1.406 1.354
C5 H5 1.080 1.081
C6 H6 1.080 1.080
N4 HN41 1.000 0.969
N4 HN42 1.000 0.970
C1' C2' 1.531 1.544
C1' O4' 1.424 1.444
C1' H1' 1.100 1.090
C2' O2' 1.416 1.430
C2' C3' 1.496 1.547
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.966
C3' C4' 1.533 1.544
C3' H3'2 1.100 1.090
C3' H3' 1.100 1.090
C4' O4' 1.438 1.444
C4' C5' 1.515 1.531
C4' H4' 1.100 1.090
C5' O5' 1.410 1.429
C5' H5'1 1.100 1.090
C5' H5'2 1.100 1.090
O5' PA 1.656 1.610
PA O1A 1.560 1.480
PA O2A 1.544 1.610
PA O3A 1.680 1.611
O2A HOA2 0.950 0.967
O3A PB 1.659 1.609
PB O1B 1.573 1.480
PB O2B 1.567 1.611
PB O3B 1.681 1.610
O2B HOB2 0.950 0.967
O3B PG 1.654 1.610
PG O1G 1.563 1.479
PG O2G 1.591 1.610
PG O3G 1.575 1.610
O2G HOG2 0.950 0.967
O3G HOG3 0.950 0.967

Bond Angles for CH1

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 115.6 120.3
C2 N1 C1' 121.6 119.9
N1 C2 N3 122.8 121.1
N1 C2 O2 122.9 119.4
C6 N1 C1' 122.8 119.8
N1 C6 C5 123.6 119.2
N1 C6 H6 118.2 120.4
N1 C1' C2' 113.1 110.4
N1 C1' O4' 113.6 110.3
N1 C1' H1' 102.1 110.4
N3 C2 O2 114.3 119.5
C2 N3 C4 120.7 120.7
N3 C4 C5 120.7 119.6
N3 C4 N4 117.2 120.2
C5 C4 N4 122.1 120.2
C4 C5 C6 116.6 119.0
C4 C5 H5 121.7 120.5
C4 N4 HN41 125.3 120.0
C4 N4 HN42 109.4 120.0
C6 C5 H5 121.7 120.5
C5 C6 H6 118.2 120.4
HN41 N4 HN42 125.3 120.0
C2' C1' O4' 102.8 104.9
C2' C1' H1' 113.0 110.4
C1' C2' O2' 109.4 110.8
C1' C2' C3' 103.3 104.0
C1' C2' H2' 115.1 110.5
O4' C1' H1' 112.6 110.4
C1' O4' C4' 107.0 105.3
O2' C2' C3' 114.1 110.5
O2' C2' H2' 104.6 110.5
C2' O2' HO2' 109.5 106.8
C3' C2' H2' 110.6 110.5
C2' C3' C4' 104.3 104.0
C2' C3' H3'2 112.4 110.6
C2' C3' H3' 111.2 110.4
C4' C3' H3'2 112.3 110.5
C4' C3' H3' 111.3 110.5
C3' C4' O4' 106.5 104.8
C3' C4' C5' 105.0 110.5
C3' C4' H4' 116.2 110.4
H3'2 C3' H3' 105.5 110.6
O4' C4' C5' 115.0 110.4
O4' C4' H4' 106.5 110.3
C5' C4' H4' 108.0 110.3
C4' C5' O5' 112.4 109.5
C4' C5' H5'1 107.8 109.4
C4' C5' H5'2 108.5 109.5
O5' C5' H5'1 107.9 109.5
O5' C5' H5'2 108.5 109.5
C5' O5' PA 123.4 106.8
H5'1 C5' H5'2 111.8 109.5
O5' PA O1A 108.3 109.5
O5' PA O2A 105.6 109.5
O5' PA O3A 105.3 109.5
O1A PA O2A 110.4 109.5
O1A PA O3A 112.5 109.4
O2A PA O3A 114.2 109.5
PA O2A HOA2 109.5 106.7
PA O3A PB 120.8 106.8
O3A PB O1B 105.8 109.5
O3A PB O2B 110.3 109.5
O3A PB O3B 109.6 109.5
O1B PB O2B 109.9 109.4
O1B PB O3B 107.0 109.5
O2B PB O3B 113.9 109.5
PB O2B HOB2 109.5 106.7
PB O3B PG 122.6 106.8
O3B PG O1G 124.0 109.4
O3B PG O2G 113.7 109.5
O3B PG O3G 82.2 109.5
O1G PG O2G 118.9 109.5
O1G PG O3G 81.9 109.5
O2G PG O3G 87.9 109.5
PG O2G HOG2 109.5 106.8
PG O3G HOG3 109.5 106.8

Torsion Angles for CH1

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 N1 C2 C1' 180.2 180.1
C2 N1 C6 C5 0.0 359.6
C2 N1 C6 H6 180.0 180.0
C2 N1 C1' C2' 79.6 296.6
C2 N1 C1' O4' 196.3 52.1
C2 N1 C1' H1' 317.8 174.3
N3 C2 N1 O2 179.8 180.1
N1 C2 N3 C4 0.1 359.9
C2 N1 C6 C1' 179.8 179.9
C6 N1 C2 N3 360.0 0.1
C6 N1 C2 O2 180.2 180.0
C6 N1 C1' C2' 259.4 116.5
C6 N1 C1' O4' 16.1 232.0
C6 N1 C1' H1' 137.5 354.2
C4 C5 C6 N1 359.9 0.6
N1 C6 C5 H5 179.9 180.0
C5 C6 N1 H6 180.0 179.6
C2 N1 C1' C6 180.2 180.1
C1' N1 C2 N3 179.8 180.0
C1' N1 C2 O2 0.0 359.9
C1' N1 C6 C5 180.2 179.7
C1' N1 C6 H6 0.2 0.1
C2' C1' N1 O4' 243.3 244.6
C2' C1' N1 H1' 121.8 122.3
N1 C1' C2' O2' 282.9 261.4
N1 C1' C2' C3' 161.0 142.7
N1 C1' C2' H2' 40.3 24.1
O4' C1' N1 H1' 238.5 237.8
N1 C1' O4' C4' 198.0 200.7
N3 C2 N1 C6 360.0 0.1
N3 C2 N1 C1' 179.8 180.0
N1 C2 N3 O2 180.2 179.9
C2 N3 C4 C5 359.9 0.3
C2 N3 C4 N4 179.9 180.0
O2 C2 N1 C6 180.2 180.0
O2 C2 N1 C1' 0.0 359.9
N1 C2 O2 N3 179.8 180.1
O2 C2 N3 C4 179.8 180.0
C4 N3 C2 O2 179.8 180.0
C5 C4 N3 N4 180.0 180.3
N3 C4 C5 C6 0.1 359.4
N3 C4 C5 H5 180.1 180.1
N3 C4 N4 HN41 180.0 0.0
N3 C4 N4 HN42 360.0 179.7
N1 C6 C5 C4 359.9 0.6
N3 C4 C5 N4 180.0 179.7
C5 C4 N4 HN41 0.0 179.7
C5 C4 N4 HN42 180.0 359.4
C6 C5 C4 H5 180.0 179.4
C4 C5 C6 H6 179.9 180.2
N3 C4 N4 C5 180.0 180.3
N4 C4 C5 C6 180.1 179.7
N4 C4 C5 H5 0.1 0.4
HN41 N4 C4 HN42 180.0 180.4
C5 C6 N1 C1' 180.2 179.7
N1 C6 C5 H6 180.0 180.4
C6 C5 C4 N4 180.1 179.7
C4 C5 C6 H5 180.0 180.6
H5 C5 C4 N4 0.1 0.4
C4 C5 H5 C6 180.0 179.4
H5 C5 C6 H6 359.9 359.6
H6 C6 N1 C1' 0.2 0.1
N1 C6 H6 C5 180.0 179.6
H6 C6 C5 H5 359.9 359.6
C4 N4 HN41 HN42 180.0 179.6
C4 N4 HN42 HN41 180.0 180.4
N1 C1' C2' O4' 122.9 118.8
N1 C1' C2' H1' 244.5 237.7
O4' C1' C2' H1' 121.6 118.9
C2' C1' O4' C4' 320.6 319.5
O2' C2' C1' C3' 121.9 118.7
O2' C2' C1' H2' 242.6 237.3
C1' C2' O2' HO2' 204.9 183.9
C3' C2' C1' H2' 120.7 118.5
C1' C2' C3' C4' 337.5 0.1
C1' C2' C3' H3'2 215.5 241.4
C1' C2' C3' H3' 97.5 118.7
N1 C1' O4' C2' 237.4 241.2
N1 C1' O4' H1' 115.4 122.2
C2' C1' O4' H1' 238.0 241.1
O4' C1' C2' O2' 160.0 142.6
O4' C1' C2' C3' 38.1 23.9
O4' C1' C2' H2' 277.4 265.3
C3' C4' O4' C1' 25.2 40.5
C1' O4' C4' C5' 141.1 159.5
C1' O4' C4' H4' 260.6 281.6
N1 C1' H1' C2' 121.9 122.3
N1 C1' H1' O4' 237.8 237.8
C2' C1' H1' O4' 116.0 115.5
H1' C1' C2' O2' 38.3 23.7
H1' C1' C2' C3' 276.5 265.0
H1' C1' C2' H2' 155.7 146.4
H1' C1' O4' C4' 82.6 78.5
O2' C2' C1' O4' 160.0 142.6
O2' C2' C1' H1' 38.3 23.7
C1' C2' O2' C3' 244.9 245.3
C1' C2' O2' H2' 123.9 122.7
C3' C2' O2' H2' 239.0 237.5
O2' C2' C3' C4' 218.8 241.2
O2' C2' C3' H3'2 96.8 122.5
O2' C2' C3' H3' 338.8 359.7
C3' C2' C1' O4' 38.1 23.9
C3' C2' C1' H1' 276.5 265.0
C1' C2' C3' O2' 118.7 118.9
C1' C2' C3' H2' 236.3 241.5
O2' C2' C3' H2' 117.6 122.5
C3' C2' O2' HO2' 320.0 298.6
C4' C3' C2' H3'2 121.9 118.7
C4' C3' C2' H3' 240.0 241.5
C2' C3' C4' O4' 359.7 335.9
C2' C3' C4' C5' 237.4 217.0
C2' C3' C4' H4' 118.2 94.7
H3'2 C3' C2' H3' 118.0 122.7
H2' C2' C1' O4' 277.4 265.3
H2' C2' C1' H1' 155.7 146.4
C1' C2' H2' O2' 239.9 237.1
C1' C2' H2' C3' 116.6 114.5
O2' C2' H2' C3' 236.8 237.5
H2' C2' O2' HO2' 81.0 61.1
H2' C2' C3' C4' 101.2 118.7
H2' C2' C3' H3'2 339.3 359.9
H2' C2' C3' H3' 221.2 237.2
HO2' O2' C2' C3' 320.0 298.6
HO2' O2' C2' H2' 81.0 61.1
C1' O4' C4' C3' 25.2 40.5
C4' C3' C2' H2' 101.2 118.7
C2' C3' C4' H3'2 238.0 241.2
C2' C3' C4' H3' 120.0 118.5
H3'2 C3' C4' H3' 242.0 237.3
O4' C4' C3' C5' 122.3 118.9
O4' C4' C3' H4' 241.6 241.2
C5' C4' C3' H4' 119.2 122.3
C3' C4' C5' O5' 116.2 181.9
C3' C4' C5' H5'1 357.4 301.9
C3' C4' C5' H5'2 236.2 61.9
H3'2 C3' C2' H2' 339.3 359.9
C2' C3' H3'2 C4' 117.2 114.7
C2' C3' H3'2 H3' 238.6 237.4
C4' C3' H3'2 H3' 121.4 122.7
H3'2 C3' C4' O4' 121.7 94.7
H3'2 C3' C4' C5' 359.4 335.8
H3'2 C3' C4' H4' 240.2 213.5
H3' C3' C2' H2' 221.2 237.2
C2' C3' H3' C4' 244.2 245.5
C2' C3' H3' H3'2 122.1 122.7
C4' C3' H3' H3'2 237.9 237.3
H3' C3' C4' O4' 239.7 217.4
H3' C3' C4' C5' 117.4 98.6
H3' C3' C4' H4' 358.2 336.3
C4' O4' C1' H1' 82.6 78.5
O4' C4' C3' H3'2 121.7 94.7
O4' C4' C3' H3' 239.7 217.4
C3' C4' O4' C5' 244.2 241.1
C3' C4' O4' H4' 124.6 118.9
C5' C4' O4' H4' 240.5 237.9
O4' C4' C5' O5' 359.5 66.4
O4' C4' C5' H5'1 240.8 186.4
O4' C4' C5' H5'2 119.5 306.4
C5' C4' C3' H3'2 359.4 335.8
C5' C4' C3' H3' 117.4 98.6
C3' C4' C5' O4' 116.7 115.4
C3' C4' C5' H4' 235.4 237.6
O4' C4' C5' H4' 118.7 122.2
O5' C5' C4' H5'1 118.8 240.0
O5' C5' C4' H5'2 240.0 120.0
C4' C5' O5' PA 217.8 180.0
H5'1 C5' C4' H5'2 121.2 240.0
H4' C4' C3' H3'2 240.2 213.5
H4' C4' C3' H3' 358.2 336.3
C3' C4' H4' O4' 241.6 244.6
C3' C4' H4' C5' 117.6 122.4
O4' C4' H4' C5' 236.0 237.8
H4' C4' C5' O5' 240.8 304.3
H4' C4' C5' H5'1 122.0 64.3
H4' C4' C5' H5'2 0.8 184.2
O5' C5' C4' H4' 240.8 304.3
C4' C5' O5' H5'1 241.2 120.0
C4' C5' O5' H5'2 120.0 240.0
H5'1 C5' O5' H5'2 238.8 120.0
C5' O5' PA O1A 280.3 55.0
C5' O5' PA O2A 162.1 295.0
C5' O5' PA O3A 40.9 175.0
H5'1 C5' C4' H4' 122.0 64.3
C4' C5' H5'1 O5' 121.6 240.0
C4' C5' H5'1 H5'2 240.8 120.0
O5' C5' H5'1 H5'2 119.2 240.0
H5'1 C5' O5' PA 336.5 60.0
H5'2 C5' C4' H4' 0.8 184.2
C4' C5' H5'2 O5' 237.6 120.0
C4' C5' H5'2 H5'1 118.8 240.1
O5' C5' H5'2 H5'1 241.2 120.1
H5'2 C5' O5' PA 97.8 300.0
PA O5' C5' H5'1 336.5 60.0
PA O5' C5' H5'2 97.8 300.0
O1A PA O5' O2A 118.3 120.0
O1A PA O5' O3A 239.4 240.1
O2A PA O5' O3A 121.1 120.0
O5' PA O2A HOA2 40.9 300.0
O5' PA O3A PB 231.2 200.0
O5' PA O1A O2A 244.9 239.9
O5' PA O1A O3A 116.0 120.0
O2A PA O1A O3A 231.1 240.0
O1A PA O2A HOA2 284.1 180.0
O1A PA O3A PB 348.9 320.0
O5' PA O2A O1A 116.8 120.0
O5' PA O2A O3A 244.8 240.0
O1A PA O2A O3A 128.0 119.9
O2A PA O3A PB 115.8 80.0
O5' PA O3A O1A 242.2 240.0
O5' PA O3A O2A 115.3 120.1
O1A PA O3A O2A 233.1 240.0
O3A PA O2A HOA2 156.1 60.1
PA O3A PB O1B 179.7 45.0
PA O3A PB O2B 60.9 285.1
PA O3A PB O3B 294.8 165.0
HOA2 O2A PA O3A 156.1 60.1
O1B PB O3A O2B 118.8 120.0
O1B PB O3A O3B 244.9 240.0
O2B PB O3A O3B 126.1 120.0
O3A PB O2B HOB2 150.6 299.9
O3A PB O3B PG 157.4 200.0
O3A PB O1B O2B 241.0 240.0
O3A PB O1B O3B 116.8 120.0
O2B PB O1B O3B 235.8 240.0
O1B PB O2B HOB2 34.3 179.9
O1B PB O3B PG 271.6 320.0
O3A PB O2B O1B 116.2 120.0
O3A PB O2B O3B 236.3 240.0
O1B PB O2B O3B 120.1 120.0
O2B PB O3B PG 33.3 80.0
O3A PB O3B O1B 245.8 240.0
O3A PB O3B O2B 124.0 120.0
O1B PB O3B O2B 238.3 240.0
O3B PB O2B HOB2 274.2 60.0
PB O3B PG O1G 338.9 45.0
PB O3B PG O2G 179.9 165.0
PB O3B PG O3G 264.2 285.0
HOB2 O2B PB O3B 274.2 60.0
O1G PG O3B O2G 159.0 240.0
O1G PG O3B O3G 74.8 120.0
O2G PG O3B O3G 275.7 240.0
O3B PG O2G HOG2 55.9 180.0
O3B PG O3G HOG3 109.1 300.0
O3B PG O1G O2G 202.0 120.0
O3B PG O1G O3G 285.1 240.0
O2G PG O1G O3G 83.1 120.0
O1G PG O2G HOG2 255.7 300.0
O1G PG O3G HOG3 343.0 180.1
O3B PG O2G O1G 160.2 240.0
O3B PG O2G O3G 80.6 120.0
O1G PG O2G O3G 280.4 240.0
O2G PG O3G HOG3 223.4 60.0
O3B PG O3G O1G 126.1 120.0
O3B PG O3G O2G 245.7 240.0
O1G PG O3G O2G 119.6 120.0
O3G PG O2G HOG2 335.3 60.0
HOG2 O2G PG O3G 335.3 60.0