Atom Nomenclature for CH0

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for CH0

Atom Name (V3) Atom Name (V2)
C1 C1
O1 O1
C2 C2
O2 O2
C3 C3
O3 O3
C4 C4
O4 O4
C5 C5
O5 O5
C6 C6
O6 O6
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
O7 O7
O8 O8
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
O9 O9
C31 C31
C32 C32
C33 C33
C34 C34
C35 C35
C36 C36
O10 O10
O11 O11
C37 C37
C38 C38
O12 O12
C39 C39
C40 C40
C41 C41
O13 O13
C42 C42
O14 O14
O15 O15
O16 O16
C43 C43
O17 O17
C44 C44
C45 C45
C46 C46
C47 C47
O18 O18
C48 C48
O19 O19
O20 O20
O21 O21
C49 C49
O22 O22
C50 C50
C51 C51
C52 C52
C53 C53
O23 O23
C54 C54
O24 O24
O25 O25
O26 O26
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
C55 C55
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45
H46 H46
H47 H47
H48 H48
H49 H49
H50 H50
H51 H51
H52 H52
H53 H53
H54 H54
H55 H55
H56 H56
H57 H57
H58 H58
H59 H59
H60 H60
H61 H61
H62 H62
H63 H63
H64 H64
H65 H65
C56 C56
H66 H66
H67 H67
H68 H68
H69 H69
H70 H70
H71 H71
H72 H72
H73 H73
H74 H74
H75 H75
H76 H76
H77 H77
H78 H78
H79 H79
H80 H80
H81 H81
H82 H82
H83 H83
H84 H84
H85 H85
H86 H86
H87 H87
H88 H88
H89 H89
H90 H90
H91 H91
O27 O27
C57 C57
C58 C58
C59 C59
C60 C60
O28 O28
O29 O29
O30 O30
C61 C61
O31 O31
O32 O32
C62 C62
C63 C63
C64 C64
C65 C65
O33 O33
O34 O34
O35 O35
C66 C66
O36 O36
H92 H92
H93 H93
H94 H94
H95 H95
H96 H96
H97 H97
H98 H98
H99 H99
H100 H100
H101 H101
H102 H102
H103 H103
H104 H104
H105 H105
H106 H106
H107 H107
H108 H108
H109 H109
H110 H110
H111 H111
H112 H112
H113 H113
H114 H114