PDB Chemical Component CH

Ideal Model

Chemical Description

Name N3-PROTONATED CYTIDINE-5'-MONOPHOSPHATE
Formula C9 H15 N3 O8 P
Formal charge 1
Molecular weight 324.204 g/mol
Component type RNA LINKING
Nonstandard Parent Id C

Chemical features

Atom count 36
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms OP3 HO3'
Bond count 37
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5'-cytidylic acid
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(4-amino-2-oxo-3H-pyrimidin-1-ium-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=CC=[N+]([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C(=O)N1
SMILES (CACTVS) NC1=CC=[N+]([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C(=O)N1
Stereo SMILES (OpenEye) C1=C(NC(=O)[N+](=C1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N
InChI descriptor InChI=1S/C9H14N3O8P/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H4,10,11,15,16,17,18)/p+1/t4-,6-,7-,8-/m1/s1
InChIKey descriptor ULTJSGLMABORQB-XVFCMESISA-O

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Model PDB code 1KOS
Processing site EBI