PDB Chemical Component CH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CH
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
OP3 |
P |
1.613 |
1.481 |
OP3 |
HOP3 |
0.950 |
|
P |
OP1 |
1.478 |
1.609 |
P |
OP2 |
1.475 |
1.610 |
P |
O5' |
1.637 |
1.610 |
OP2 |
HOP2 |
0.951 |
0.966 |
O5' |
C5' |
1.449 |
1.429 |
C5' |
C4' |
1.522 |
1.530 |
C5' |
H5' |
1.091 |
1.090 |
C5' |
H5'' |
1.090 |
1.091 |
C4' |
O4' |
1.419 |
1.444 |
C4' |
C3' |
1.534 |
1.545 |
C4' |
H4' |
1.089 |
1.090 |
O4' |
C1' |
1.409 |
1.445 |
C3' |
O3' |
1.439 |
1.430 |
C3' |
C2' |
1.528 |
1.548 |
C3' |
H3' |
1.091 |
1.089 |
O3' |
HO3' |
0.949 |
0.967 |
C2' |
O2' |
1.425 |
1.430 |
C2' |
C1' |
1.532 |
1.544 |
C2' |
H2' |
1.089 |
1.089 |
O2' |
HO2' |
0.961 |
0.967 |
C1' |
N1 |
1.491 |
1.465 |
C1' |
H1' |
1.089 |
1.090 |
N1 |
C2 |
1.399 |
1.332 |
N1 |
C6 |
1.387 |
1.322 |
C2 |
O2 |
1.232 |
1.219 |
C2 |
N3 |
1.380 |
1.346 |
N3 |
C4 |
1.373 |
1.366 |
N3 |
HN3 |
1.010 |
0.970 |
C4 |
N4 |
1.333 |
1.370 |
C4 |
C5 |
1.426 |
1.387 |
N4 |
H41 |
1.009 |
0.970 |
N4 |
H42 |
1.009 |
0.970 |
C5 |
C6 |
1.355 |
1.388 |
C5 |
H5 |
1.092 |
1.080 |
C6 |
H6 |
1.096 |
1.080 |
Bond Angles for CH
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
P |
OP3 |
HOP3 |
107.7 |
|
OP3 |
P |
OP1 |
107.7 |
109.5 |
OP3 |
P |
OP2 |
107.8 |
109.4 |
OP3 |
P |
O5' |
103.4 |
109.4 |
OP1 |
P |
OP2 |
118.3 |
109.5 |
OP1 |
P |
O5' |
108.4 |
109.5 |
OP2 |
P |
O5' |
110.1 |
109.5 |
P |
OP2 |
HOP2 |
107.8 |
106.8 |
P |
O5' |
C5' |
125.4 |
106.8 |
O5' |
C5' |
C4' |
112.2 |
109.5 |
O5' |
C5' |
H5' |
110.2 |
109.5 |
O5' |
C5' |
H5'' |
107.5 |
109.5 |
C4' |
C5' |
H5' |
109.6 |
109.5 |
C4' |
C5' |
H5'' |
108.8 |
109.5 |
C5' |
C4' |
O4' |
106.3 |
110.4 |
C5' |
C4' |
C3' |
116.6 |
110.5 |
C5' |
C4' |
H4' |
109.0 |
110.4 |
H5' |
C5' |
H5'' |
108.4 |
109.4 |
O4' |
C4' |
C3' |
105.7 |
104.8 |
O4' |
C4' |
H4' |
109.5 |
110.4 |
C4' |
O4' |
C1' |
110.4 |
105.3 |
C3' |
C4' |
H4' |
109.4 |
110.4 |
C4' |
C3' |
O3' |
110.0 |
110.5 |
C4' |
C3' |
C2' |
98.8 |
104.1 |
C4' |
C3' |
H3' |
111.0 |
110.6 |
O4' |
C1' |
C2' |
103.9 |
104.9 |
O4' |
C1' |
N1 |
109.9 |
110.4 |
O4' |
C1' |
H1' |
99.6 |
110.3 |
O3' |
C3' |
C2' |
112.2 |
110.5 |
O3' |
C3' |
H3' |
109.9 |
110.5 |
C3' |
O3' |
HO3' |
110.0 |
106.8 |
C2' |
C3' |
H3' |
114.4 |
110.6 |
C3' |
C2' |
O2' |
116.0 |
110.5 |
C3' |
C2' |
C1' |
100.1 |
104.0 |
C3' |
C2' |
H2' |
107.2 |
110.5 |
O2' |
C2' |
C1' |
111.7 |
110.8 |
O2' |
C2' |
H2' |
109.6 |
110.5 |
C2' |
O2' |
HO2' |
105.9 |
106.8 |
C1' |
C2' |
H2' |
111.9 |
110.4 |
C2' |
C1' |
N1 |
117.0 |
110.4 |
C2' |
C1' |
H1' |
112.9 |
110.4 |
N1 |
C1' |
H1' |
111.7 |
110.4 |
C1' |
N1 |
C2 |
116.5 |
119.4 |
C1' |
N1 |
C6 |
121.8 |
119.4 |
C2 |
N1 |
C6 |
121.7 |
121.2 |
N1 |
C2 |
O2 |
123.3 |
119.4 |
N1 |
C2 |
N3 |
115.9 |
121.2 |
N1 |
C6 |
C5 |
122.1 |
120.0 |
N1 |
C6 |
H6 |
120.5 |
120.0 |
O2 |
C2 |
N3 |
120.8 |
119.4 |
C2 |
N3 |
C4 |
123.3 |
120.0 |
C2 |
N3 |
HN3 |
116.7 |
120.0 |
C4 |
N3 |
HN3 |
120.0 |
120.0 |
N3 |
C4 |
N4 |
118.3 |
120.6 |
N3 |
C4 |
C5 |
119.8 |
118.8 |
N4 |
C4 |
C5 |
121.9 |
120.6 |
C4 |
N4 |
H41 |
119.9 |
120.0 |
C4 |
N4 |
H42 |
120.0 |
120.0 |
C4 |
C5 |
C6 |
117.2 |
118.8 |
C4 |
C5 |
H5 |
120.4 |
120.6 |
H41 |
N4 |
H42 |
120.1 |
120.0 |
C6 |
C5 |
H5 |
122.3 |
120.6 |
C5 |
C6 |
H6 |
117.4 |
120.0 |
Torsion Angles for CH
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
OP1 |
P |
OP3 |
OP2 |
231.3 |
120.0 |
OP1 |
P |
OP3 |
O5' |
114.7 |
239.9 |
OP2 |
P |
OP3 |
O5' |
243.4 |
120.0 |
OP3 |
P |
OP2 |
HOP2 |
180.0 |
60.0 |
OP3 |
P |
O5' |
C5' |
323.8 |
305.0 |
HOP3 |
OP3 |
P |
OP1 |
180.0 |
|
HOP3 |
OP3 |
P |
OP2 |
308.7 |
|
HOP3 |
OP3 |
P |
O5' |
65.3 |
|
OP1 |
P |
OP3 |
HOP3 |
180.0 |
|
OP3 |
P |
OP1 |
OP2 |
122.4 |
240.0 |
OP3 |
P |
OP1 |
O5' |
248.7 |
120.0 |
OP2 |
P |
OP1 |
O5' |
126.2 |
240.0 |
OP1 |
P |
OP2 |
HOP2 |
302.4 |
300.0 |
OP1 |
P |
O5' |
C5' |
209.7 |
65.0 |
OP2 |
P |
OP3 |
HOP3 |
308.7 |
|
OP3 |
P |
OP2 |
OP1 |
237.6 |
120.0 |
OP3 |
P |
OP2 |
O5' |
112.2 |
240.1 |
OP1 |
P |
OP2 |
O5' |
234.6 |
120.1 |
OP2 |
P |
O5' |
C5' |
78.8 |
185.0 |
O5' |
P |
OP3 |
HOP3 |
65.3 |
|
OP3 |
P |
O5' |
OP1 |
114.1 |
240.0 |
OP3 |
P |
O5' |
OP2 |
245.0 |
119.9 |
OP1 |
P |
O5' |
OP2 |
130.9 |
240.0 |
O5' |
P |
OP2 |
HOP2 |
67.9 |
179.9 |
P |
O5' |
C5' |
C4' |
281.9 |
180.0 |
P |
O5' |
C5' |
H5' |
159.5 |
60.0 |
P |
O5' |
C5' |
H5'' |
41.5 |
300.0 |
HOP2 |
OP2 |
P |
O5' |
67.9 |
179.9 |
C4' |
C5' |
O5' |
H5' |
122.4 |
120.0 |
C4' |
C5' |
O5' |
H5'' |
240.3 |
240.0 |
O5' |
C5' |
C4' |
O4' |
53.0 |
66.4 |
O5' |
C5' |
C4' |
C3' |
170.5 |
181.8 |
O5' |
C5' |
C4' |
H4' |
295.0 |
304.2 |
H5' |
C5' |
O5' |
H5'' |
117.9 |
120.0 |
O5' |
C5' |
C4' |
H5' |
237.2 |
239.9 |
O5' |
C5' |
C4' |
H5'' |
118.9 |
120.0 |
H5' |
C5' |
C4' |
H5'' |
241.7 |
240.1 |
O4' |
C4' |
C5' |
C3' |
242.5 |
244.6 |
O4' |
C4' |
C5' |
H4' |
118.0 |
122.3 |
C5' |
C4' |
O4' |
C1' |
114.3 |
159.5 |
C3' |
C4' |
C5' |
H4' |
235.5 |
237.7 |
C5' |
C4' |
C3' |
O3' |
158.9 |
98.4 |
C5' |
C4' |
C3' |
C2' |
276.5 |
217.0 |
C5' |
C4' |
C3' |
H3' |
37.0 |
335.8 |
O5' |
C5' |
H5' |
C4' |
124.0 |
120.0 |
O5' |
C5' |
H5' |
H5'' |
242.6 |
240.0 |
C4' |
C5' |
H5' |
H5'' |
118.6 |
119.9 |
H5' |
C5' |
C4' |
O4' |
175.8 |
186.5 |
H5' |
C5' |
C4' |
C3' |
293.3 |
301.9 |
H5' |
C5' |
C4' |
H4' |
57.8 |
64.2 |
O5' |
C5' |
H5'' |
C4' |
238.2 |
240.0 |
O5' |
C5' |
H5'' |
H5' |
119.1 |
120.1 |
C4' |
C5' |
H5'' |
H5' |
240.9 |
240.0 |
H5'' |
C5' |
C4' |
O4' |
294.1 |
306.4 |
H5'' |
C5' |
C4' |
C3' |
51.6 |
61.9 |
H5'' |
C5' |
C4' |
H4' |
176.1 |
184.2 |
O4' |
C4' |
C5' |
H5' |
175.8 |
186.5 |
O4' |
C4' |
C5' |
H5'' |
294.1 |
306.4 |
C5' |
C4' |
O4' |
C3' |
124.5 |
118.9 |
C5' |
C4' |
O4' |
H4' |
242.3 |
237.7 |
C3' |
C4' |
O4' |
H4' |
117.8 |
118.8 |
O4' |
C4' |
C3' |
O3' |
276.8 |
217.3 |
O4' |
C4' |
C3' |
C2' |
34.4 |
335.9 |
O4' |
C4' |
C3' |
H3' |
154.9 |
94.7 |
C4' |
O4' |
C1' |
C2' |
341.3 |
319.5 |
C4' |
O4' |
C1' |
N1 |
215.3 |
200.6 |
C4' |
O4' |
C1' |
H1' |
97.9 |
78.4 |
C3' |
C4' |
C5' |
H5' |
293.3 |
301.9 |
C3' |
C4' |
C5' |
H5'' |
51.6 |
61.9 |
C5' |
C4' |
C3' |
O4' |
242.1 |
241.1 |
C5' |
C4' |
C3' |
H4' |
124.3 |
122.3 |
O4' |
C4' |
C3' |
H4' |
242.1 |
241.2 |
C3' |
C4' |
O4' |
C1' |
349.8 |
40.5 |
O3' |
C3' |
C4' |
C2' |
242.4 |
241.4 |
O3' |
C3' |
C4' |
H3' |
121.9 |
122.6 |
C4' |
C3' |
O3' |
HO3' |
180.0 |
180.0 |
C2' |
C3' |
C4' |
H3' |
239.5 |
241.2 |
C4' |
C3' |
C2' |
O2' |
195.9 |
241.2 |
C4' |
C3' |
C2' |
C1' |
316.2 |
0.1 |
C4' |
C3' |
C2' |
H2' |
73.0 |
118.6 |
H4' |
C4' |
C5' |
H5' |
57.8 |
64.2 |
H4' |
C4' |
C5' |
H5'' |
176.1 |
184.2 |
C5' |
C4' |
H4' |
O4' |
116.0 |
122.3 |
C5' |
C4' |
H4' |
C3' |
231.4 |
237.6 |
O4' |
C4' |
H4' |
C3' |
115.5 |
115.3 |
H4' |
C4' |
O4' |
C1' |
231.9 |
281.7 |
H4' |
C4' |
C3' |
O3' |
34.6 |
336.1 |
H4' |
C4' |
C3' |
C2' |
152.3 |
94.7 |
H4' |
C4' |
C3' |
H3' |
272.8 |
213.5 |
C1' |
O4' |
C4' |
C3' |
349.8 |
40.5 |
C1' |
O4' |
C4' |
H4' |
231.9 |
281.7 |
C3' |
C2' |
C1' |
O4' |
39.8 |
23.9 |
O2' |
C2' |
C1' |
O4' |
163.1 |
142.6 |
O4' |
C1' |
C2' |
H2' |
286.5 |
265.3 |
C2' |
C1' |
O4' |
N1 |
126.0 |
118.9 |
C2' |
C1' |
O4' |
H1' |
243.4 |
241.1 |
N1 |
C1' |
O4' |
H1' |
117.4 |
122.2 |
O4' |
C1' |
N1 |
C2 |
267.4 |
57.1 |
O4' |
C1' |
N1 |
C6 |
87.1 |
237.0 |
O3' |
C3' |
C4' |
H4' |
34.6 |
336.1 |
C4' |
C3' |
O3' |
C2' |
109.0 |
114.7 |
C4' |
C3' |
O3' |
H3' |
237.4 |
237.3 |
C2' |
C3' |
O3' |
H3' |
128.5 |
122.7 |
O3' |
C3' |
C2' |
O2' |
311.8 |
359.9 |
O3' |
C3' |
C2' |
C1' |
72.1 |
118.8 |
O3' |
C3' |
C2' |
H2' |
189.0 |
237.3 |
C2' |
C3' |
C4' |
H4' |
152.3 |
94.7 |
C4' |
C3' |
C2' |
O3' |
244.1 |
241.3 |
C4' |
C3' |
C2' |
H3' |
118.0 |
118.8 |
O4' |
C1' |
C2' |
C3' |
39.8 |
23.9 |
O3' |
C3' |
C2' |
H3' |
233.9 |
237.4 |
C2' |
C3' |
O3' |
HO3' |
71.0 |
65.4 |
O2' |
C2' |
C3' |
C1' |
239.7 |
241.1 |
O2' |
C2' |
C3' |
H2' |
122.8 |
122.6 |
C3' |
C2' |
O2' |
HO2' |
186.2 |
298.6 |
C1' |
C2' |
C3' |
H2' |
243.1 |
241.5 |
C3' |
C2' |
C1' |
N1 |
161.2 |
142.7 |
C3' |
C2' |
C1' |
H1' |
292.9 |
265.0 |
H3' |
C3' |
C4' |
H4' |
272.8 |
213.5 |
C4' |
C3' |
H3' |
O3' |
122.0 |
122.6 |
C4' |
C3' |
H3' |
C2' |
249.2 |
245.3 |
O3' |
C3' |
H3' |
C2' |
127.3 |
122.6 |
H3' |
C3' |
O3' |
HO3' |
302.5 |
302.7 |
H3' |
C3' |
C2' |
O2' |
77.9 |
122.5 |
H3' |
C3' |
C2' |
C1' |
198.2 |
241.4 |
H3' |
C3' |
C2' |
H2' |
315.1 |
359.9 |
HO3' |
O3' |
C3' |
C2' |
71.0 |
65.4 |
HO3' |
O3' |
C3' |
H3' |
302.5 |
302.7 |
O4' |
C1' |
C2' |
O2' |
163.1 |
142.6 |
O2' |
C2' |
C3' |
H3' |
77.9 |
122.5 |
C3' |
C2' |
O2' |
C1' |
113.8 |
114.7 |
C3' |
C2' |
O2' |
H2' |
238.5 |
237.4 |
C1' |
C2' |
O2' |
H2' |
124.6 |
122.7 |
O2' |
C2' |
C1' |
N1 |
284.5 |
261.4 |
O2' |
C2' |
C1' |
H1' |
56.2 |
23.7 |
O4' |
C1' |
C2' |
N1 |
238.6 |
241.2 |
O4' |
C1' |
C2' |
H1' |
106.9 |
118.9 |
C1' |
C2' |
C3' |
H3' |
198.2 |
241.4 |
C3' |
C2' |
C1' |
O2' |
236.7 |
241.3 |
C3' |
C2' |
C1' |
H2' |
113.3 |
118.6 |
O2' |
C2' |
C1' |
H2' |
236.6 |
237.3 |
C1' |
C2' |
O2' |
HO2' |
72.4 |
183.9 |
N1 |
C1' |
C2' |
H1' |
228.3 |
237.7 |
C2' |
C1' |
N1 |
C2 |
149.2 |
301.6 |
C2' |
C1' |
N1 |
C6 |
328.9 |
121.5 |
H2' |
C2' |
C3' |
H3' |
315.1 |
359.9 |
C3' |
C2' |
H2' |
O2' |
126.7 |
122.6 |
C3' |
C2' |
H2' |
C1' |
251.2 |
245.5 |
O2' |
C2' |
H2' |
C1' |
124.6 |
122.9 |
H2' |
C2' |
O2' |
HO2' |
307.7 |
61.2 |
H2' |
C2' |
C1' |
N1 |
47.9 |
24.2 |
H2' |
C2' |
C1' |
H1' |
179.6 |
146.5 |
HO2' |
O2' |
C2' |
C1' |
72.4 |
183.9 |
HO2' |
O2' |
C2' |
H2' |
307.7 |
61.2 |
O4' |
C1' |
N1 |
C2' |
118.2 |
115.4 |
O4' |
C1' |
N1 |
H1' |
250.4 |
237.8 |
N1 |
C1' |
C2' |
H2' |
47.9 |
24.2 |
C2' |
C1' |
N1 |
H1' |
132.2 |
122.3 |
C2 |
N1 |
C1' |
C6 |
180.3 |
180.1 |
C1' |
N1 |
C2 |
O2 |
359.7 |
359.9 |
C1' |
N1 |
C2 |
N3 |
179.6 |
179.7 |
C1' |
N1 |
C6 |
C5 |
180.4 |
180.0 |
C1' |
N1 |
C6 |
H6 |
359.9 |
0.1 |
O4' |
C1' |
H1' |
C2' |
250.3 |
244.5 |
O4' |
C1' |
H1' |
N1 |
116.1 |
122.2 |
H1' |
C1' |
C2' |
H2' |
179.6 |
146.5 |
C2' |
C1' |
H1' |
N1 |
225.7 |
237.7 |
H1' |
C1' |
N1 |
C2 |
17.0 |
179.3 |
H1' |
C1' |
N1 |
C6 |
196.7 |
359.2 |
C2 |
N1 |
C1' |
H1' |
17.0 |
179.3 |
C1' |
N1 |
C2 |
C6 |
179.7 |
179.9 |
C2 |
N1 |
C6 |
C5 |
0.0 |
359.9 |
C2 |
N1 |
C6 |
H6 |
179.6 |
180.1 |
O2 |
C2 |
N1 |
N3 |
180.1 |
180.2 |
N1 |
C2 |
N3 |
C4 |
0.0 |
0.5 |
N1 |
C2 |
N3 |
HN3 |
180.1 |
180.0 |
C6 |
N1 |
C1' |
H1' |
196.7 |
359.2 |
C1' |
N1 |
C6 |
C2 |
180.3 |
180.1 |
C6 |
N1 |
C2 |
O2 |
180.0 |
180.0 |
C6 |
N1 |
C2 |
N3 |
359.9 |
359.8 |
C4 |
C5 |
C6 |
N1 |
0.1 |
0.1 |
N1 |
C6 |
C5 |
H5 |
180.5 |
180.1 |
C5 |
C6 |
N1 |
H6 |
180.5 |
179.9 |
O2 |
C2 |
N1 |
C6 |
180.0 |
180.0 |
N1 |
C2 |
O2 |
N3 |
179.9 |
179.8 |
O2 |
C2 |
N3 |
C4 |
179.9 |
180.3 |
O2 |
C2 |
N3 |
HN3 |
360.0 |
359.8 |
N3 |
C2 |
N1 |
C6 |
359.9 |
359.8 |
N1 |
C2 |
N3 |
O2 |
180.1 |
180.2 |
C4 |
N3 |
C2 |
HN3 |
180.0 |
180.5 |
C2 |
N3 |
C4 |
N4 |
180.5 |
179.7 |
C2 |
N3 |
C4 |
C5 |
0.1 |
359.5 |
C2 |
N3 |
C4 |
HN3 |
180.0 |
179.5 |
N4 |
C4 |
N3 |
C5 |
180.3 |
180.3 |
N3 |
C4 |
N4 |
H41 |
359.5 |
179.6 |
N3 |
C4 |
N4 |
H42 |
179.5 |
359.5 |
N3 |
C4 |
C5 |
C6 |
359.8 |
0.3 |
N3 |
C4 |
C5 |
H5 |
179.5 |
180.2 |
C2 |
N3 |
HN3 |
C4 |
180.0 |
180.5 |
HN3 |
N3 |
C4 |
N4 |
0.4 |
0.3 |
HN3 |
N3 |
C4 |
C5 |
180.1 |
180.0 |
N4 |
C4 |
N3 |
HN3 |
0.4 |
0.3 |
N3 |
C4 |
N4 |
C5 |
179.7 |
179.7 |
N4 |
C4 |
C5 |
C6 |
179.5 |
180.0 |
N4 |
C4 |
C5 |
H5 |
359.1 |
359.9 |
H41 |
N4 |
C4 |
H42 |
180.0 |
180.1 |
N1 |
C6 |
C5 |
C4 |
0.1 |
0.1 |
C5 |
C4 |
N3 |
HN3 |
180.1 |
180.0 |
N3 |
C4 |
C5 |
N4 |
180.3 |
180.3 |
C5 |
C4 |
N4 |
H41 |
179.8 |
359.9 |
C5 |
C4 |
N4 |
H42 |
359.8 |
179.8 |
C6 |
C5 |
C4 |
H5 |
180.4 |
180.0 |
C4 |
C5 |
C6 |
H6 |
180.6 |
179.9 |
H41 |
N4 |
C4 |
C5 |
179.8 |
359.9 |
C4 |
N4 |
H41 |
H42 |
180.0 |
179.9 |
H42 |
N4 |
C4 |
C5 |
359.8 |
179.8 |
C4 |
N4 |
H42 |
H41 |
180.0 |
180.1 |
N1 |
C6 |
C5 |
H6 |
179.5 |
180.1 |
C4 |
C5 |
C6 |
H5 |
179.6 |
180.0 |
C4 |
C5 |
H5 |
C6 |
180.4 |
180.0 |
H5 |
C5 |
C6 |
H6 |
0.9 |
359.9 |
N1 |
C6 |
H6 |
C5 |
180.5 |
179.9 |
H6 |
C6 |
C5 |
H5 |
0.9 |
359.9 |