PDB Chemical Component CH

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CH

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P 1.613 1.481
OP3 HOP3 0.950  
P OP1 1.478 1.609
P OP2 1.475 1.610
P O5' 1.637 1.610
OP2 HOP2 0.951 0.966
O5' C5' 1.449 1.429
C5' C4' 1.522 1.530
C5' H5' 1.091 1.090
C5' H5'' 1.090 1.091
C4' O4' 1.419 1.444
C4' C3' 1.534 1.545
C4' H4' 1.089 1.090
O4' C1' 1.409 1.445
C3' O3' 1.439 1.430
C3' C2' 1.528 1.548
C3' H3' 1.091 1.089
O3' HO3' 0.949 0.967
C2' O2' 1.425 1.430
C2' C1' 1.532 1.544
C2' H2' 1.089 1.089
O2' HO2' 0.961 0.967
C1' N1 1.491 1.465
C1' H1' 1.089 1.090
N1 C2 1.399 1.332
N1 C6 1.387 1.322
C2 O2 1.232 1.219
C2 N3 1.380 1.346
N3 C4 1.373 1.366
N3 HN3 1.010 0.970
C4 N4 1.333 1.370
C4 C5 1.426 1.387
N4 H41 1.009 0.970
N4 H42 1.009 0.970
C5 C6 1.355 1.388
C5 H5 1.092 1.080
C6 H6 1.096 1.080

Bond Angles for CH

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP3 HOP3 107.7  
OP3 P OP1 107.7 109.5
OP3 P OP2 107.8 109.4
OP3 P O5' 103.4 109.4
OP1 P OP2 118.3 109.5
OP1 P O5' 108.4 109.5
OP2 P O5' 110.1 109.5
P OP2 HOP2 107.8 106.8
P O5' C5' 125.4 106.8
O5' C5' C4' 112.2 109.5
O5' C5' H5' 110.2 109.5
O5' C5' H5'' 107.5 109.5
C4' C5' H5' 109.6 109.5
C4' C5' H5'' 108.8 109.5
C5' C4' O4' 106.3 110.4
C5' C4' C3' 116.6 110.5
C5' C4' H4' 109.0 110.4
H5' C5' H5'' 108.4 109.4
O4' C4' C3' 105.7 104.8
O4' C4' H4' 109.5 110.4
C4' O4' C1' 110.4 105.3
C3' C4' H4' 109.4 110.4
C4' C3' O3' 110.0 110.5
C4' C3' C2' 98.8 104.1
C4' C3' H3' 111.0 110.6
O4' C1' C2' 103.9 104.9
O4' C1' N1 109.9 110.4
O4' C1' H1' 99.6 110.3
O3' C3' C2' 112.2 110.5
O3' C3' H3' 109.9 110.5
C3' O3' HO3' 110.0 106.8
C2' C3' H3' 114.4 110.6
C3' C2' O2' 116.0 110.5
C3' C2' C1' 100.1 104.0
C3' C2' H2' 107.2 110.5
O2' C2' C1' 111.7 110.8
O2' C2' H2' 109.6 110.5
C2' O2' HO2' 105.9 106.8
C1' C2' H2' 111.9 110.4
C2' C1' N1 117.0 110.4
C2' C1' H1' 112.9 110.4
N1 C1' H1' 111.7 110.4
C1' N1 C2 116.5 119.4
C1' N1 C6 121.8 119.4
C2 N1 C6 121.7 121.2
N1 C2 O2 123.3 119.4
N1 C2 N3 115.9 121.2
N1 C6 C5 122.1 120.0
N1 C6 H6 120.5 120.0
O2 C2 N3 120.8 119.4
C2 N3 C4 123.3 120.0
C2 N3 HN3 116.7 120.0
C4 N3 HN3 120.0 120.0
N3 C4 N4 118.3 120.6
N3 C4 C5 119.8 118.8
N4 C4 C5 121.9 120.6
C4 N4 H41 119.9 120.0
C4 N4 H42 120.0 120.0
C4 C5 C6 117.2 118.8
C4 C5 H5 120.4 120.6
H41 N4 H42 120.1 120.0
C6 C5 H5 122.3 120.6
C5 C6 H6 117.4 120.0

Torsion Angles for CH

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP3 OP2 231.3 120.0
OP1 P OP3 O5' 114.7 239.9
OP2 P OP3 O5' 243.4 120.0
OP3 P OP2 HOP2 180.0 60.0
OP3 P O5' C5' 323.8 305.0
HOP3 OP3 P OP1 180.0  
HOP3 OP3 P OP2 308.7  
HOP3 OP3 P O5' 65.3  
OP1 P OP3 HOP3 180.0  
OP3 P OP1 OP2 122.4 240.0
OP3 P OP1 O5' 248.7 120.0
OP2 P OP1 O5' 126.2 240.0
OP1 P OP2 HOP2 302.4 300.0
OP1 P O5' C5' 209.7 65.0
OP2 P OP3 HOP3 308.7  
OP3 P OP2 OP1 237.6 120.0
OP3 P OP2 O5' 112.2 240.1
OP1 P OP2 O5' 234.6 120.1
OP2 P O5' C5' 78.8 185.0
O5' P OP3 HOP3 65.3  
OP3 P O5' OP1 114.1 240.0
OP3 P O5' OP2 245.0 119.9
OP1 P O5' OP2 130.9 240.0
O5' P OP2 HOP2 67.9 179.9
P O5' C5' C4' 281.9 180.0
P O5' C5' H5' 159.5 60.0
P O5' C5' H5'' 41.5 300.0
HOP2 OP2 P O5' 67.9 179.9
C4' C5' O5' H5' 122.4 120.0
C4' C5' O5' H5'' 240.3 240.0
O5' C5' C4' O4' 53.0 66.4
O5' C5' C4' C3' 170.5 181.8
O5' C5' C4' H4' 295.0 304.2
H5' C5' O5' H5'' 117.9 120.0
O5' C5' C4' H5' 237.2 239.9
O5' C5' C4' H5'' 118.9 120.0
H5' C5' C4' H5'' 241.7 240.1
O4' C4' C5' C3' 242.5 244.6
O4' C4' C5' H4' 118.0 122.3
C5' C4' O4' C1' 114.3 159.5
C3' C4' C5' H4' 235.5 237.7
C5' C4' C3' O3' 158.9 98.4
C5' C4' C3' C2' 276.5 217.0
C5' C4' C3' H3' 37.0 335.8
O5' C5' H5' C4' 124.0 120.0
O5' C5' H5' H5'' 242.6 240.0
C4' C5' H5' H5'' 118.6 119.9
H5' C5' C4' O4' 175.8 186.5
H5' C5' C4' C3' 293.3 301.9
H5' C5' C4' H4' 57.8 64.2
O5' C5' H5'' C4' 238.2 240.0
O5' C5' H5'' H5' 119.1 120.1
C4' C5' H5'' H5' 240.9 240.0
H5'' C5' C4' O4' 294.1 306.4
H5'' C5' C4' C3' 51.6 61.9
H5'' C5' C4' H4' 176.1 184.2
O4' C4' C5' H5' 175.8 186.5
O4' C4' C5' H5'' 294.1 306.4
C5' C4' O4' C3' 124.5 118.9
C5' C4' O4' H4' 242.3 237.7
C3' C4' O4' H4' 117.8 118.8
O4' C4' C3' O3' 276.8 217.3
O4' C4' C3' C2' 34.4 335.9
O4' C4' C3' H3' 154.9 94.7
C4' O4' C1' C2' 341.3 319.5
C4' O4' C1' N1 215.3 200.6
C4' O4' C1' H1' 97.9 78.4
C3' C4' C5' H5' 293.3 301.9
C3' C4' C5' H5'' 51.6 61.9
C5' C4' C3' O4' 242.1 241.1
C5' C4' C3' H4' 124.3 122.3
O4' C4' C3' H4' 242.1 241.2
C3' C4' O4' C1' 349.8 40.5
O3' C3' C4' C2' 242.4 241.4
O3' C3' C4' H3' 121.9 122.6
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 239.5 241.2
C4' C3' C2' O2' 195.9 241.2
C4' C3' C2' C1' 316.2 0.1
C4' C3' C2' H2' 73.0 118.6
H4' C4' C5' H5' 57.8 64.2
H4' C4' C5' H5'' 176.1 184.2
C5' C4' H4' O4' 116.0 122.3
C5' C4' H4' C3' 231.4 237.6
O4' C4' H4' C3' 115.5 115.3
H4' C4' O4' C1' 231.9 281.7
H4' C4' C3' O3' 34.6 336.1
H4' C4' C3' C2' 152.3 94.7
H4' C4' C3' H3' 272.8 213.5
C1' O4' C4' C3' 349.8 40.5
C1' O4' C4' H4' 231.9 281.7
C3' C2' C1' O4' 39.8 23.9
O2' C2' C1' O4' 163.1 142.6
O4' C1' C2' H2' 286.5 265.3
C2' C1' O4' N1 126.0 118.9
C2' C1' O4' H1' 243.4 241.1
N1 C1' O4' H1' 117.4 122.2
O4' C1' N1 C2 267.4 57.1
O4' C1' N1 C6 87.1 237.0
O3' C3' C4' H4' 34.6 336.1
C4' C3' O3' C2' 109.0 114.7
C4' C3' O3' H3' 237.4 237.3
C2' C3' O3' H3' 128.5 122.7
O3' C3' C2' O2' 311.8 359.9
O3' C3' C2' C1' 72.1 118.8
O3' C3' C2' H2' 189.0 237.3
C2' C3' C4' H4' 152.3 94.7
C4' C3' C2' O3' 244.1 241.3
C4' C3' C2' H3' 118.0 118.8
O4' C1' C2' C3' 39.8 23.9
O3' C3' C2' H3' 233.9 237.4
C2' C3' O3' HO3' 71.0 65.4
O2' C2' C3' C1' 239.7 241.1
O2' C2' C3' H2' 122.8 122.6
C3' C2' O2' HO2' 186.2 298.6
C1' C2' C3' H2' 243.1 241.5
C3' C2' C1' N1 161.2 142.7
C3' C2' C1' H1' 292.9 265.0
H3' C3' C4' H4' 272.8 213.5
C4' C3' H3' O3' 122.0 122.6
C4' C3' H3' C2' 249.2 245.3
O3' C3' H3' C2' 127.3 122.6
H3' C3' O3' HO3' 302.5 302.7
H3' C3' C2' O2' 77.9 122.5
H3' C3' C2' C1' 198.2 241.4
H3' C3' C2' H2' 315.1 359.9
HO3' O3' C3' C2' 71.0 65.4
HO3' O3' C3' H3' 302.5 302.7
O4' C1' C2' O2' 163.1 142.6
O2' C2' C3' H3' 77.9 122.5
C3' C2' O2' C1' 113.8 114.7
C3' C2' O2' H2' 238.5 237.4
C1' C2' O2' H2' 124.6 122.7
O2' C2' C1' N1 284.5 261.4
O2' C2' C1' H1' 56.2 23.7
O4' C1' C2' N1 238.6 241.2
O4' C1' C2' H1' 106.9 118.9
C1' C2' C3' H3' 198.2 241.4
C3' C2' C1' O2' 236.7 241.3
C3' C2' C1' H2' 113.3 118.6
O2' C2' C1' H2' 236.6 237.3
C1' C2' O2' HO2' 72.4 183.9
N1 C1' C2' H1' 228.3 237.7
C2' C1' N1 C2 149.2 301.6
C2' C1' N1 C6 328.9 121.5
H2' C2' C3' H3' 315.1 359.9
C3' C2' H2' O2' 126.7 122.6
C3' C2' H2' C1' 251.2 245.5
O2' C2' H2' C1' 124.6 122.9
H2' C2' O2' HO2' 307.7 61.2
H2' C2' C1' N1 47.9 24.2
H2' C2' C1' H1' 179.6 146.5
HO2' O2' C2' C1' 72.4 183.9
HO2' O2' C2' H2' 307.7 61.2
O4' C1' N1 C2' 118.2 115.4
O4' C1' N1 H1' 250.4 237.8
N1 C1' C2' H2' 47.9 24.2
C2' C1' N1 H1' 132.2 122.3
C2 N1 C1' C6 180.3 180.1
C1' N1 C2 O2 359.7 359.9
C1' N1 C2 N3 179.6 179.7
C1' N1 C6 C5 180.4 180.0
C1' N1 C6 H6 359.9 0.1
O4' C1' H1' C2' 250.3 244.5
O4' C1' H1' N1 116.1 122.2
H1' C1' C2' H2' 179.6 146.5
C2' C1' H1' N1 225.7 237.7
H1' C1' N1 C2 17.0 179.3
H1' C1' N1 C6 196.7 359.2
C2 N1 C1' H1' 17.0 179.3
C1' N1 C2 C6 179.7 179.9
C2 N1 C6 C5 0.0 359.9
C2 N1 C6 H6 179.6 180.1
O2 C2 N1 N3 180.1 180.2
N1 C2 N3 C4 0.0 0.5
N1 C2 N3 HN3 180.1 180.0
C6 N1 C1' H1' 196.7 359.2
C1' N1 C6 C2 180.3 180.1
C6 N1 C2 O2 180.0 180.0
C6 N1 C2 N3 359.9 359.8
C4 C5 C6 N1 0.1 0.1
N1 C6 C5 H5 180.5 180.1
C5 C6 N1 H6 180.5 179.9
O2 C2 N1 C6 180.0 180.0
N1 C2 O2 N3 179.9 179.8
O2 C2 N3 C4 179.9 180.3
O2 C2 N3 HN3 360.0 359.8
N3 C2 N1 C6 359.9 359.8
N1 C2 N3 O2 180.1 180.2
C4 N3 C2 HN3 180.0 180.5
C2 N3 C4 N4 180.5 179.7
C2 N3 C4 C5 0.1 359.5
C2 N3 C4 HN3 180.0 179.5
N4 C4 N3 C5 180.3 180.3
N3 C4 N4 H41 359.5 179.6
N3 C4 N4 H42 179.5 359.5
N3 C4 C5 C6 359.8 0.3
N3 C4 C5 H5 179.5 180.2
C2 N3 HN3 C4 180.0 180.5
HN3 N3 C4 N4 0.4 0.3
HN3 N3 C4 C5 180.1 180.0
N4 C4 N3 HN3 0.4 0.3
N3 C4 N4 C5 179.7 179.7
N4 C4 C5 C6 179.5 180.0
N4 C4 C5 H5 359.1 359.9
H41 N4 C4 H42 180.0 180.1
N1 C6 C5 C4 0.1 0.1
C5 C4 N3 HN3 180.1 180.0
N3 C4 C5 N4 180.3 180.3
C5 C4 N4 H41 179.8 359.9
C5 C4 N4 H42 359.8 179.8
C6 C5 C4 H5 180.4 180.0
C4 C5 C6 H6 180.6 179.9
H41 N4 C4 C5 179.8 359.9
C4 N4 H41 H42 180.0 179.9
H42 N4 C4 C5 359.8 179.8
C4 N4 H42 H41 180.0 180.1
N1 C6 C5 H6 179.5 180.1
C4 C5 C6 H5 179.6 180.0
C4 C5 H5 C6 180.4 180.0
H5 C5 C6 H6 0.9 359.9
N1 C6 H6 C5 180.5 179.9
H6 C6 C5 H5 0.9 359.9