PDB Chemical Component CGY

Ideal Model

Chemical Description

Name (1R)-1,4-anhydro-2-deoxy-1-[2,6-diamino-5-(dihydroxyamino)pyridin-3-yl]-5-O-phosphono-D-erythro-pentitol
Formula C10 H17 N4 O8 P
Formal charge 0
Molecular weight 352.238 g/mol
Component type DNA linking

Chemical features

Atom count 40
Chiral atom count 3
Chiral atoms C1' C3' C4'
Observed leaving atoms OP3 HO3'
Bond count 41
Aromatic bond count 6

Chemical Identifiers

Systematic name (ACDLabs) (1R)-1,4-anhydro-2-deoxy-1-[2,6-diamino-5-(dihydroxyamino)pyridin-3-yl]-5-O-phosphono-D-erythro-pentitol
Systematic name (OpenEye OEToolkits) [(2~{R},3~{S},5~{R})-5-[2,6-bis(azanyl)-5-[bis(oxidanyl)amino]pyridin-3-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) Nc1nc(N)c(cc1[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)N(O)O
SMILES (CACTVS) Nc1nc(N)c(cc1[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)N(O)O
Stereo SMILES (OpenEye) c1c(c(nc(c1N(O)O)N)N)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O
InChI descriptor InChI=1S/C10H17N4O8P/c11-9-4(1-5(14(16)17)10(12)13-9)7-2-6(15)8(22-7)3-21-23(18,19)20/h1,6-8,15-17H,2-3H2,(H4,11,12,13)(H2,18,19,20)/t6-,7+,8+/m0/s1
InChIKey descriptor VFFYYNDFZAMVIU-XLPZGREQSA-N

Status Information

Last modified 2018-09-14
Created 2017-09-22
Release status REL
Model PDB code 6B1S
Processing site RCSB