PDB Chemical Component CGS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CGS

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 CC 1.510 1.464
N1 CA 1.507 1.464
N1 S4 1.779 1.656
CC C5 1.522 1.506
CC HC1 1.115 1.090
CC HC2 1.115 1.090
CA C34 1.544 1.507
CA CB 1.556 1.530
CA HA 1.115 1.090
S4 C17 1.781 1.762
S4 O32 1.431 1.421
S4 O33 1.431 1.421
C5 CD 1.452 1.387
C5 CY 1.440 1.382
CD CE 1.446 1.387
CD HD 1.104 1.078
CE CZ 1.432 1.382
CE HE 1.103 1.080
CZ N11 1.384 1.319
CZ HZ 1.103 1.080
N11 CY 1.399 1.319
CY HY 1.103 1.080
C17 CE2 1.452 1.382
C17 CE1 1.444 1.383
CE2 CD2 1.454 1.382
CE2 HE2 1.103 1.080
CD2 C20 1.468 1.387
CD2 HD2 1.102 1.080
C20 CD1 1.467 1.387
C20 O27 1.409 1.359
CD1 CE1 1.450 1.382
CD1 HD1 1.104 1.080
CE1 HE1 1.104 1.079
O27 COM 1.428 1.429
COM HOM1 1.114 1.090
COM HOM2 1.116 1.089
COM HOM3 1.115 1.089
C34 N35 1.327 1.348
C34 O47 1.234 1.212
N35 O48 1.384 1.415
N35 H49 1.021 0.970
CB CG2 1.527 1.530
CB CG1 1.526 1.530
CB HB 1.115 1.089
CG2 HG21 1.115 1.090
CG2 HG22 1.115 1.089
CG2 HG23 1.115 1.089
CG1 HG11 1.115 1.089
CG1 HG12 1.115 1.089
CG1 HG13 1.115 1.090
O48 H50 0.950 0.967

Bond Angles for CGS

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CC N1 CA 124.1 120.1
CC N1 S4 115.2 119.9
N1 CC C5 119.8 109.5
N1 CC HC1 108.5 109.4
N1 CC HC2 108.5 109.5
CA N1 S4 115.2 120.0
N1 CA C34 110.8 109.4
N1 CA CB 121.5 109.5
N1 CA HA 100.2 109.5
N1 S4 C17 109.8 107.3
N1 S4 O32 103.5 105.8
N1 S4 O33 103.3 105.7
C5 CC HC1 108.5 109.5
C5 CC HC2 108.5 109.5
CC C5 CD 121.3 120.4
CC C5 CY 123.0 120.4
HC1 CC HC2 101.5 109.4
C34 CA CB 112.4 109.5
C34 CA HA 112.3 109.4
CA C34 N35 115.6 120.0
CA C34 O47 123.4 120.0
CB CA HA 98.0 109.5
CA CB CG2 113.4 109.4
CA CB CG1 113.9 109.5
CA CB HB 102.6 109.5
C17 S4 O32 110.4 105.8
C17 S4 O33 109.5 105.7
S4 C17 CE2 120.9 120.0
S4 C17 CE1 119.4 119.9
O32 S4 O33 119.6 125.4
CD C5 CY 115.7 119.2
C5 CD CE 121.5 118.4
C5 CD HD 119.4 120.8
C5 CY N11 123.4 120.7
C5 CY HY 119.8 119.6
CE CD HD 119.0 120.8
CD CE CZ 117.7 119.2
CD CE HE 121.6 120.4
CZ CE HE 120.7 120.4
CE CZ N11 122.3 120.8
CE CZ HZ 120.6 119.6
N11 CZ HZ 117.1 119.6
CZ N11 CY 119.3 121.7
N11 CY HY 116.7 119.6
CE2 C17 CE1 119.7 120.1
C17 CE2 CD2 120.2 120.1
C17 CE2 HE2 119.8 119.9
C17 CE1 CD1 120.5 120.0
C17 CE1 HE1 119.5 120.0
CD2 CE2 HE2 120.0 120.0
CE2 CD2 C20 120.7 120.0
CE2 CD2 HD2 119.2 120.0
C20 CD2 HD2 120.1 120.0
CD2 C20 CD1 118.0 119.8
CD2 C20 O27 121.1 120.1
CD1 C20 O27 121.0 120.1
C20 CD1 CE1 120.9 120.0
C20 CD1 HD1 120.2 120.1
C20 O27 COM 116.8 106.8
CE1 CD1 HD1 118.9 120.0
CD1 CE1 HE1 120.0 120.0
O27 COM HOM1 116.8 109.5
O27 COM HOM2 109.5 109.4
O27 COM HOM3 109.6 109.5
HOM1 COM HOM2 109.6 109.5
HOM1 COM HOM3 109.6 109.5
HOM2 COM HOM3 100.6 109.5
N35 C34 O47 121.1 120.0
C34 N35 O48 119.7 120.0
C34 N35 H49 118.1 120.0
O48 N35 H49 122.2 120.0
N35 O48 H50 119.6 106.8
CG2 CB CG1 106.7 109.5
CG2 CB HB 110.4 109.4
CB CG2 HG21 113.4 109.4
CB CG2 HG22 110.8 109.5
CB CG2 HG23 110.8 109.5
CG1 CB HB 109.8 109.5
CB CG1 HG11 113.9 109.5
CB CG1 HG12 110.5 109.5
CB CG1 HG13 110.5 109.4
HG21 CG2 HG22 110.7 109.5
HG21 CG2 HG23 110.8 109.4
HG22 CG2 HG23 99.5 109.5
HG11 CG1 HG12 110.6 109.5
HG11 CG1 HG13 110.6 109.4
HG12 CG1 HG13 99.8 109.5

Torsion Angles for CGS

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CA N1 CC S4 152.3 180.1
CC N1 CA C34 291.8 298.3
CC N1 CA CB 67.0 58.3
CC N1 CA HA 173.0 178.4
CC N1 S4 C17 77.0 90.1
CC N1 S4 O32 319.1 337.5
CC N1 S4 O33 193.7 202.6
C5 CC N1 HC1 234.7 240.0
C5 CC N1 HC2 125.3 120.1
N1 CC C5 CD 309.5 98.0
N1 CC C5 CY 129.4 277.7
HC1 CC N1 HC2 250.6 240.1
CC N1 CA S4 207.7 179.9
CA N1 CC C5 252.6 272.8
CA N1 CC HC1 17.9 32.8
CA N1 CC HC2 127.3 152.7
CA N1 S4 C17 282.1 270.0
CA N1 S4 O32 164.3 157.4
CA N1 S4 O33 38.9 22.5
C34 CA N1 CB 224.8 240.0
C34 CA N1 HA 118.7 119.9
N1 CA C34 N35 247.9 209.9
N1 CA C34 O47 68.4 30.1
CB CA N1 HA 254.0 240.0
N1 CA CB CG2 126.6 58.7
N1 CA CB CG1 4.3 178.7
N1 CA CB HB 245.6 298.8
CC N1 S4 CA 154.8 180.1
S4 N1 CC C5 100.3 92.7
S4 N1 CC HC1 225.5 212.7
S4 N1 CC HC2 335.0 332.7
S4 N1 CA C34 84.1 118.4
S4 N1 CA CB 219.3 238.4
S4 N1 CA HA 325.4 358.5
C17 S4 N1 O32 117.9 112.6
C17 S4 N1 O33 243.2 247.5
N1 S4 C17 CE2 273.7 90.0
N1 S4 C17 CE1 91.9 269.9
O32 S4 N1 O33 125.4 134.8
C5 CC N1 CA 252.6 272.8
C5 CC N1 S4 100.3 92.7
N1 CC C5 HC1 125.3 120.0
N1 CC C5 HC2 234.7 240.0
HC1 CC C5 HC2 109.5 119.9
CD C5 CC CY 180.0 180.2
CC C5 CD CE 180.0 180.0
CC C5 CD HD 0.0 0.1
CC C5 CY N11 180.1 179.6
CC C5 CY HY 0.0 0.2
HC1 CC N1 CA 17.9 32.8
HC1 CC N1 S4 225.5 212.7
N1 CC HC1 C5 228.4 240.0
N1 CC HC1 HC2 114.1 120.0
C5 CC HC1 HC2 245.8 240.0
HC1 CC C5 CD 184.2 338.0
HC1 CC C5 CY 4.2 157.7
HC2 CC N1 CA 127.3 152.7
HC2 CC N1 S4 335.0 332.7
N1 CC HC2 C5 131.6 120.1
N1 CC HC2 HC1 245.9 240.1
C5 CC HC2 HC1 114.2 120.0
HC2 CC C5 CD 74.7 218.0
HC2 CC C5 CY 254.7 37.8
C34 CA N1 S4 84.1 118.4
N1 CA C34 CB 139.5 120.0
N1 CA C34 HA 248.9 240.0
CB CA C34 HA 109.4 120.0
C34 CA CB CG2 261.2 178.7
C34 CA CB CG1 138.9 298.7
C34 CA CB HB 20.2 58.8
N35 C34 CA O47 179.5 179.9
CA C34 N35 O48 180.4 180.0
CA C34 N35 H49 0.3 0.1
CB CA N1 S4 219.3 238.4
N1 CA CB C34 225.4 240.0
N1 CA CB HA 107.2 120.1
C34 CA CB HA 241.8 240.1
CB CA C34 N35 108.4 89.9
CB CA C34 O47 288.9 270.1
CG2 CB CA CG1 122.4 240.0
CG2 CB CA HB 241.0 120.0
CA CB CG2 HG21 180.0 180.0
CA CB CG2 HG22 305.3 300.0
CA CB CG2 HG23 54.7 60.1
CG1 CB CA HB 118.6 240.0
CA CB CG1 HG11 180.0 300.0
CA CB CG1 HG12 305.3 60.0
CA CB CG1 HG13 54.8 180.0
HA CA N1 S4 325.4 358.5
N1 CA HA C34 117.6 120.0
N1 CA HA CB 235.9 239.9
C34 CA HA CB 118.2 120.0
HA CA C34 N35 359.0 329.9
HA CA C34 O47 179.5 150.1
HA CA CB CG2 19.4 298.7
HA CA CB CG1 257.1 58.7
HA CA CB HB 138.4 178.7
N1 S4 C17 O32 246.5 247.4
N1 S4 C17 O33 112.8 112.5
O32 S4 C17 O33 226.3 225.2
CE2 C17 S4 CE1 181.8 180.1
S4 C17 CE2 CD2 177.9 179.9
S4 C17 CE2 HE2 357.9 360.0
S4 C17 CE1 CD1 182.1 179.7
S4 C17 CE1 HE1 2.2 0.0
N1 S4 O32 C17 117.5 113.7
N1 S4 O32 O33 245.9 236.8
C17 S4 O32 O33 128.4 123.1
O32 S4 C17 CE2 27.2 202.7
O32 S4 C17 CE1 205.4 22.5
N1 S4 O33 C17 243.1 246.3
N1 S4 O33 O32 114.2 123.2
C17 S4 O33 O32 231.2 236.9
O33 S4 C17 CE2 160.9 337.5
O33 S4 C17 CE1 339.1 157.3
CD C5 CC HC1 184.2 338.0
CD C5 CC HC2 74.7 218.0
CC C5 CD CY 180.0 179.8
CD C5 CY N11 0.0 359.4
CD C5 CY HY 180.0 180.0
CE CD C5 HD 180.0 180.0
C5 CD CE CZ 0.0 0.0
C5 CD CE HE 180.0 180.0
CY C5 CC HC1 4.2 157.7
CY C5 CC HC2 254.7 37.8
CC C5 CY CD 180.0 180.2
CY C5 CD CE 360.0 0.2
CY C5 CD HD 180.0 180.3
CZ N11 CY C5 360.0 0.7
N11 CY C5 HY 180.0 179.4
CE CD C5 CY 360.0 0.2
C5 CD CE HD 180.0 180.0
CZ CE CD HE 180.0 180.0
CD CE CZ N11 360.0 0.0
CD CE CZ HZ 180.0 180.0
HD CD C5 CY 180.0 180.3
C5 CD HD CE 180.0 180.0
HD CD CE CZ 180.0 180.0
HD CD CE HE 0.0 360.0
CZ CE CD HD 180.0 180.0
CD CE CZ HE 180.0 180.0
N11 CZ CE HZ 180.0 180.1
CE CZ N11 CY 0.0 359.6
HE CE CD HD 0.0 360.0
CD CE HE CZ 180.0 180.0
HE CE CZ N11 180.0 180.0
HE CE CZ HZ 360.0 360.0
C5 CY N11 CZ 360.0 0.7
N11 CZ CE HE 180.0 180.0
CE CZ N11 HZ 180.0 179.9
CZ N11 CY HY 180.0 180.1
HZ CZ CE HE 360.0 360.0
CE CZ HZ N11 180.0 180.1
HZ CZ N11 CY 180.0 179.7
C5 CY N11 HY 180.0 180.6
CY N11 CZ HZ 180.0 179.7
C5 CY HY N11 180.0 179.4
CE2 C17 S4 O32 27.2 202.7
CE2 C17 S4 O33 160.9 337.5
S4 C17 CE2 CE1 178.2 179.9
CE2 C17 CE1 CD1 0.4 359.6
CE2 C17 CE1 HE1 180.4 179.9
CD2 CE2 C17 HE2 180.0 180.0
C17 CE2 CD2 C20 0.1 0.0
C17 CE2 CD2 HD2 180.0 180.0
CE1 C17 S4 O32 205.4 22.5
CE1 C17 S4 O33 339.1 157.3
S4 C17 CE1 CE2 181.8 180.1
CE1 C17 CE2 CD2 359.7 0.1
CE1 C17 CE2 HE2 179.7 180.1
C20 CD1 CE1 C17 359.8 0.6
C17 CE1 CD1 HD1 179.8 180.1
CD1 CE1 C17 HE1 180.0 179.7
CD2 CE2 C17 CE1 359.7 0.1
C17 CE2 CD2 HE2 180.0 180.0
C20 CD2 CE2 HD2 180.0 180.1
CE2 CD2 C20 CD1 0.1 0.2
CE2 CD2 C20 O27 180.1 180.0
HE2 CE2 C17 CE1 179.7 180.1
C17 CE2 HE2 CD2 180.0 180.0
HE2 CE2 CD2 C20 180.1 180.0
HE2 CE2 CD2 HD2 0.0 359.9
C20 CD2 CE2 HE2 180.1 180.0
CE2 CD2 C20 HD2 180.0 179.9
CD1 C20 CD2 O27 180.0 180.2
CD2 C20 CD1 CE1 359.9 359.5
CD2 C20 CD1 HD1 180.0 180.1
CD2 C20 O27 COM 271.9 180.0
HD2 CD2 CE2 HE2 0.0 359.9
CE2 CD2 HD2 C20 180.0 180.1
HD2 CD2 C20 CD1 180.1 180.2
HD2 CD2 C20 O27 0.1 0.1
C17 CE1 CD1 C20 359.8 0.6
CD1 C20 CD2 HD2 180.1 180.2
CD2 C20 CD1 O27 180.0 179.8
CD1 C20 O27 COM 91.9 359.8
CE1 CD1 C20 HD1 180.0 179.4
C20 CD1 CE1 HE1 179.8 180.3
O27 C20 CD2 HD2 0.1 0.1
CD2 C20 O27 CD1 180.0 180.2
O27 C20 CD1 CE1 180.0 179.7
O27 C20 CD1 HD1 0.0 0.2
C20 O27 COM HOM1 180.0 179.9
C20 O27 COM HOM2 305.3 299.9
C20 O27 COM HOM3 54.7 60.0
C17 CE1 CD1 HE1 180.0 180.3
CE1 CD1 C20 O27 180.0 179.7
C20 CD1 CE1 HD1 180.0 180.6
HD1 CD1 C20 O27 0.0 0.2
C20 CD1 HD1 CE1 180.0 179.4
HD1 CD1 CE1 HE1 359.8 359.8
C17 CE1 HE1 CD1 180.0 179.7
HE1 CE1 CD1 HD1 359.8 359.8
HOM1 COM O27 HOM2 234.7 240.0
HOM1 COM O27 HOM3 125.3 120.0
HOM2 COM O27 HOM3 250.6 239.9
O27 COM HOM1 HOM2 125.2 120.0
O27 COM HOM1 HOM3 234.7 240.0
HOM2 COM HOM1 HOM3 109.5 120.1
O27 COM HOM2 HOM1 230.7 240.0
O27 COM HOM2 HOM3 115.3 120.0
HOM1 COM HOM2 HOM3 244.6 240.0
O27 COM HOM3 HOM1 129.3 120.0
O27 COM HOM3 HOM2 244.7 240.0
HOM1 COM HOM3 HOM2 115.4 120.0
N35 C34 CA CB 108.4 89.9
N35 C34 CA HA 359.0 329.9
CA C34 N35 O47 180.5 180.1
O48 N35 C34 H49 180.1 180.0
C34 N35 O48 H50 180.0 180.0
O47 C34 CA CB 288.9 270.1
O47 C34 CA HA 179.5 150.1
CA C34 O47 N35 179.4 179.9
O47 C34 N35 O48 359.9 359.9
O47 C34 N35 H49 179.8 179.9
O48 N35 C34 O47 359.9 359.9
C34 N35 O48 H49 179.9 180.0
H49 N35 C34 O47 179.8 179.9
C34 N35 H49 O48 180.1 180.0
H49 N35 O48 H50 0.0 0.0
CG2 CB CA HA 19.4 298.7
CA CB CG2 CG1 233.7 120.0
CA CB CG2 HB 114.5 240.0
CG1 CB CG2 HB 240.8 120.0
CG2 CB CG1 HG11 54.1 59.9
CG2 CB CG1 HG12 179.3 180.0
CG2 CB CG1 HG13 288.8 300.0
HG21 CG2 CB HG22 234.7 240.0
HG21 CG2 CB HG23 125.3 119.9
HG22 CG2 CB HG23 250.5 239.9
CG1 CB CA HA 257.1 58.7
CA CB CG1 CG2 125.9 240.0
CA CB CG1 HB 245.5 120.0
CG2 CB CG1 HB 119.6 240.0
CG1 CB CG2 HG21 306.3 60.0
CG1 CB CG2 HG22 71.5 180.0
CG1 CB CG2 HG23 181.0 300.1
HG11 CG1 CB HG12 234.7 239.9
HG11 CG1 CB HG13 125.2 119.9
HG12 CG1 CB HG13 250.5 240.0
HB CB CA HA 138.4 178.7
CA CB HB CG2 238.9 120.0
CA CB HB CG1 121.5 240.0
CG2 CB HB CG1 242.6 120.0
HB CB CG2 HG21 65.5 300.0
HB CB CG2 HG22 190.8 60.0
HB CB CG2 HG23 300.2 180.1
HB CB CG1 HG11 294.5 179.9
HB CB CG1 HG12 59.7 300.0
HB CB CG1 HG13 169.2 60.0
HG21 CG2 CB CG1 306.3 60.0
HG21 CG2 CB HB 65.5 300.0
CB CG2 HG21 HG22 125.3 120.0
CB CG2 HG21 HG23 234.7 240.0
HG22 CG2 HG21 HG23 109.4 120.0
HG22 CG2 CB CG1 71.5 180.0
HG22 CG2 CB HB 190.8 60.0
CB CG2 HG22 HG21 233.3 240.0
CB CG2 HG22 HG23 116.6 120.1
HG21 CG2 HG22 HG23 243.4 240.0
HG23 CG2 CB CG1 181.0 300.1
HG23 CG2 CB HB 300.2 180.1
CB CG2 HG23 HG21 126.7 119.9
CB CG2 HG23 HG22 243.3 240.0
HG21 CG2 HG23 HG22 116.6 120.0
HG11 CG1 CB HB 294.5 179.9
CB CG1 HG11 HG12 125.2 120.0
CB CG1 HG11 HG13 234.8 240.1
HG12 CG1 HG11 HG13 109.6 120.0
HG12 CG1 CB HB 59.7 300.0
CB CG1 HG12 HG11 232.9 239.9
CB CG1 HG12 HG13 116.4 119.9
HG11 CG1 HG12 HG13 243.5 240.0
HG13 CG1 CB HB 169.2 60.0
CB CG1 HG13 HG11 127.1 120.0
CB CG1 HG13 HG12 243.6 240.0
HG11 CG1 HG13 HG12 116.5 120.0
H50 O48 N35 H49 0.0 0.0