PDB Chemical Component CG9
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CG9
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O06 |
C01 |
1.426 |
1.430 |
O06 |
C05 |
1.426 |
1.430 |
C04 |
C05 |
1.522 |
1.532 |
C04 |
N03 |
1.470 |
1.470 |
C02 |
C01 |
1.528 |
1.531 |
C02 |
N03 |
1.475 |
1.470 |
C08 |
C09 |
1.396 |
1.381 |
C08 |
C07 |
1.401 |
1.389 |
N03 |
C07 |
1.389 |
1.399 |
C09 |
C10 |
1.403 |
1.389 |
C07 |
C31 |
1.410 |
1.389 |
C10 |
N11 |
1.394 |
1.399 |
C10 |
C30 |
1.399 |
1.389 |
C31 |
C30 |
1.398 |
1.380 |
N11 |
C12 |
1.381 |
1.386 |
N19 |
C18 |
1.378 |
1.333 |
N19 |
C20 |
1.314 |
1.322 |
C12 |
C20 |
1.453 |
1.419 |
C12 |
N13 |
1.331 |
1.316 |
C18 |
C17 |
1.382 |
1.355 |
C20 |
N16 |
1.373 |
1.371 |
N13 |
C14 |
1.406 |
1.345 |
C17 |
N16 |
1.372 |
1.361 |
N16 |
C15 |
1.388 |
1.369 |
C14 |
C15 |
1.354 |
1.359 |
C14 |
C21 |
1.480 |
1.484 |
C22 |
C21 |
1.403 |
1.400 |
C22 |
C23 |
1.402 |
1.361 |
C21 |
C29 |
1.405 |
1.388 |
C23 |
C24 |
1.408 |
1.402 |
C29 |
C28 |
1.397 |
1.390 |
C24 |
C28 |
1.388 |
1.409 |
C24 |
C25 |
1.407 |
1.415 |
C28 |
N27 |
1.368 |
1.372 |
C25 |
N26 |
1.330 |
1.301 |
N27 |
N26 |
1.342 |
1.400 |
C01 |
H1 |
1.100 |
1.090 |
C01 |
H2 |
1.100 |
1.091 |
C02 |
H3 |
1.100 |
1.090 |
C02 |
H4 |
1.100 |
1.090 |
C04 |
H5 |
1.100 |
1.090 |
C04 |
H6 |
1.100 |
1.090 |
C05 |
H7 |
1.101 |
1.090 |
C05 |
H8 |
1.100 |
1.090 |
C08 |
H9 |
1.080 |
1.079 |
C09 |
H10 |
1.080 |
1.080 |
N11 |
H11 |
1.000 |
0.970 |
C15 |
H12 |
1.080 |
1.080 |
C17 |
H13 |
1.080 |
1.080 |
C18 |
H14 |
1.080 |
1.080 |
C22 |
H15 |
1.080 |
1.080 |
C23 |
H16 |
1.080 |
1.080 |
C25 |
H17 |
1.080 |
1.081 |
C29 |
H19 |
1.080 |
1.080 |
C30 |
H20 |
1.080 |
1.080 |
C31 |
H21 |
1.080 |
1.080 |
N27 |
H18 |
1.000 |
0.970 |
Bond Angles for CG9
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O06 |
C01 |
H1 |
109.0 |
109.6 |
O06 |
C01 |
H2 |
109.0 |
109.5 |
O06 |
C05 |
H7 |
109.9 |
109.5 |
O06 |
C05 |
H8 |
109.9 |
109.5 |
C05 |
C04 |
H5 |
109.5 |
109.5 |
C05 |
C04 |
H6 |
109.5 |
109.5 |
C04 |
C05 |
H7 |
109.9 |
109.5 |
C04 |
C05 |
H8 |
109.9 |
109.5 |
C04 |
N03 |
C07 |
120.4 |
111.0 |
C02 |
C01 |
H1 |
109.1 |
109.5 |
C02 |
C01 |
H2 |
109.1 |
109.5 |
C02 |
N03 |
C07 |
118.2 |
111.0 |
N03 |
C02 |
H3 |
108.6 |
109.6 |
N03 |
C02 |
H4 |
108.6 |
109.5 |
C08 |
C09 |
C10 |
120.6 |
120.0 |
C09 |
C08 |
H9 |
119.5 |
120.0 |
C08 |
C09 |
H10 |
119.7 |
120.0 |
C08 |
C07 |
C31 |
117.8 |
120.0 |
N03 |
C07 |
C31 |
120.7 |
120.0 |
C09 |
C10 |
N11 |
117.9 |
120.0 |
C09 |
C10 |
C30 |
119.0 |
119.9 |
C10 |
C09 |
H10 |
119.7 |
120.0 |
C07 |
C31 |
C30 |
121.4 |
120.0 |
C07 |
C31 |
H21 |
119.3 |
120.0 |
N11 |
C10 |
C30 |
123.2 |
120.0 |
C10 |
N11 |
C12 |
128.5 |
120.0 |
C10 |
N11 |
H11 |
115.7 |
120.1 |
C10 |
C30 |
H20 |
119.9 |
120.0 |
C31 |
C30 |
H20 |
119.9 |
120.0 |
N11 |
C12 |
C20 |
122.6 |
120.2 |
N11 |
C12 |
N13 |
118.9 |
120.2 |
C12 |
N11 |
H11 |
115.7 |
120.0 |
N19 |
C18 |
H14 |
124.2 |
125.8 |
C12 |
C20 |
N19 |
127.3 |
133.0 |
N13 |
C12 |
C20 |
118.6 |
119.7 |
C12 |
C20 |
N16 |
119.8 |
118.9 |
C12 |
N13 |
C14 |
119.8 |
121.2 |
C18 |
C17 |
H13 |
127.5 |
126.4 |
N13 |
C14 |
C15 |
123.1 |
121.1 |
N13 |
C14 |
C21 |
116.9 |
119.4 |
N16 |
C15 |
H12 |
121.1 |
120.0 |
C15 |
C14 |
C21 |
119.9 |
119.5 |
C14 |
C15 |
H12 |
121.1 |
120.1 |
C14 |
C21 |
C29 |
120.1 |
119.9 |
C22 |
C21 |
C29 |
119.5 |
120.3 |
C22 |
C23 |
C24 |
118.0 |
120.0 |
C23 |
C22 |
H15 |
118.9 |
119.7 |
C22 |
C23 |
H16 |
121.0 |
120.0 |
C21 |
C29 |
C28 |
117.8 |
119.6 |
C21 |
C29 |
H19 |
121.1 |
120.1 |
C23 |
C24 |
C28 |
119.3 |
119.7 |
C23 |
C24 |
C25 |
136.2 |
133.4 |
C24 |
C23 |
H16 |
121.0 |
120.0 |
C25 |
C24 |
C28 |
104.4 |
106.8 |
C24 |
C28 |
N27 |
105.2 |
106.6 |
C24 |
C25 |
N26 |
112.9 |
108.7 |
C24 |
C25 |
H17 |
123.6 |
125.7 |
C28 |
N27 |
H18 |
123.0 |
126.0 |
N26 |
C25 |
H17 |
123.5 |
125.6 |
H1 |
C01 |
H2 |
109.5 |
109.5 |
H3 |
C02 |
H4 |
109.5 |
109.5 |
H5 |
C04 |
H6 |
109.5 |
109.5 |
H7 |
C05 |
H8 |
109.5 |
109.5 |
Torsion Angles for CG9
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C02 |
C01 |
O06 |
H1 |
239.7 |
120.0 |
C02 |
C01 |
O06 |
H2 |
120.3 |
240.1 |
H1 |
C01 |
O06 |
H2 |
240.5 |
120.1 |
C05 |
O06 |
C01 |
H1 |
58.5 |
181.4 |
C05 |
O06 |
C01 |
H2 |
177.9 |
61.4 |
O06 |
C05 |
C04 |
H5 |
62.4 |
183.2 |
O06 |
C05 |
C04 |
H6 |
182.5 |
63.1 |
C04 |
C05 |
O06 |
H7 |
240.3 |
120.0 |
C04 |
C05 |
O06 |
H8 |
119.7 |
240.1 |
H7 |
C05 |
O06 |
H8 |
239.4 |
120.1 |
O06 |
C05 |
C04 |
H7 |
119.7 |
240.1 |
O06 |
C05 |
C04 |
H8 |
240.3 |
120.0 |
C05 |
C04 |
N03 |
C07 |
204.0 |
182.4 |
H5 |
C04 |
C05 |
H6 |
239.9 |
120.1 |
H7 |
C05 |
C04 |
H8 |
120.6 |
239.9 |
C02 |
N03 |
C04 |
C07 |
195.9 |
236.2 |
C04 |
N03 |
C02 |
H3 |
208.3 |
181.5 |
C04 |
N03 |
C02 |
H4 |
89.4 |
61.3 |
C04 |
N03 |
C07 |
C31 |
37.0 |
56.4 |
O06 |
C01 |
C02 |
H1 |
120.3 |
240.0 |
O06 |
C01 |
C02 |
H2 |
239.8 |
119.9 |
H1 |
C01 |
C02 |
H2 |
119.5 |
239.9 |
C04 |
N03 |
C02 |
C07 |
164.5 |
123.8 |
N03 |
C02 |
C01 |
H1 |
279.2 |
176.8 |
N03 |
C02 |
C01 |
H2 |
159.7 |
296.9 |
C02 |
N03 |
C07 |
C31 |
201.3 |
180.0 |
H3 |
C02 |
N03 |
H4 |
119.0 |
120.2 |
C09 |
C08 |
C07 |
C31 |
359.5 |
0.3 |
C08 |
C09 |
C10 |
N11 |
180.6 |
180.0 |
C08 |
C09 |
C10 |
C30 |
0.2 |
360.0 |
C10 |
C09 |
C08 |
H10 |
180.0 |
180.1 |
N03 |
C07 |
C08 |
C31 |
181.3 |
179.7 |
C08 |
C07 |
C31 |
C30 |
0.3 |
359.5 |
C08 |
C07 |
C31 |
H21 |
180.3 |
179.7 |
C07 |
N03 |
C02 |
H3 |
43.9 |
57.6 |
C07 |
N03 |
C02 |
H4 |
284.9 |
297.5 |
C08 |
C07 |
N03 |
C31 |
178.7 |
180.3 |
N03 |
C07 |
C31 |
C30 |
179.0 |
179.8 |
N03 |
C07 |
C31 |
H21 |
359.0 |
360.0 |
C10 |
C09 |
C08 |
H9 |
180.3 |
180.0 |
C08 |
C09 |
C10 |
H10 |
180.0 |
179.9 |
N11 |
C10 |
C09 |
C30 |
180.4 |
180.0 |
C09 |
C10 |
N11 |
C12 |
175.0 |
213.1 |
C09 |
C10 |
N11 |
H11 |
355.0 |
33.1 |
C09 |
C10 |
C30 |
H20 |
179.6 |
180.0 |
C07 |
C31 |
C30 |
H20 |
180.2 |
180.3 |
C09 |
C10 |
N11 |
C30 |
179.6 |
180.0 |
N11 |
C10 |
C09 |
H10 |
0.6 |
0.1 |
N11 |
C10 |
C30 |
H20 |
359.2 |
359.9 |
C10 |
N11 |
C12 |
C20 |
186.2 |
185.2 |
C10 |
N11 |
C12 |
N13 |
7.2 |
5.6 |
C12 |
N11 |
C10 |
H11 |
180.0 |
180.0 |
C09 |
C10 |
C30 |
N11 |
180.4 |
180.0 |
C30 |
C10 |
C09 |
H10 |
180.2 |
180.0 |
C07 |
C31 |
C30 |
C10 |
0.2 |
0.5 |
C30 |
C10 |
N11 |
C12 |
355.4 |
33.2 |
C30 |
C10 |
N11 |
H11 |
175.4 |
213.2 |
C31 |
C30 |
C10 |
H20 |
180.0 |
179.8 |
C07 |
C31 |
C30 |
H21 |
180.0 |
180.2 |
C10 |
C30 |
C31 |
H20 |
180.0 |
180.2 |
C12 |
N11 |
C10 |
C30 |
355.4 |
33.2 |
C10 |
N11 |
C12 |
H11 |
180.0 |
180.0 |
N11 |
C12 |
C20 |
N19 |
0.8 |
0.8 |
N13 |
C12 |
N11 |
C20 |
181.0 |
180.3 |
N11 |
C12 |
C20 |
N16 |
180.2 |
179.7 |
N11 |
C12 |
N13 |
C14 |
180.4 |
180.0 |
C12 |
C20 |
N19 |
C18 |
179.9 |
179.5 |
N19 |
C18 |
C17 |
H13 |
179.5 |
180.0 |
C20 |
N19 |
C18 |
H14 |
180.1 |
179.7 |
N13 |
C12 |
C20 |
N19 |
179.7 |
180.5 |
C12 |
C20 |
N19 |
N16 |
179.5 |
179.0 |
N11 |
C12 |
C20 |
N13 |
181.0 |
180.3 |
C20 |
C12 |
N11 |
H11 |
6.2 |
5.2 |
C20 |
C12 |
N13 |
C14 |
1.4 |
0.3 |
N11 |
C12 |
N13 |
C20 |
179.0 |
179.7 |
N13 |
C12 |
N11 |
H11 |
187.2 |
185.6 |
N13 |
C12 |
C20 |
N16 |
359.2 |
359.4 |
C12 |
N13 |
C14 |
C15 |
357.6 |
360.0 |
C12 |
N13 |
C14 |
C21 |
180.7 |
180.0 |
C12 |
C20 |
N16 |
N19 |
180.5 |
180.9 |
C20 |
N16 |
C15 |
H12 |
178.1 |
179.7 |
C14 |
N13 |
C12 |
C20 |
1.4 |
0.3 |
C15 |
C14 |
N13 |
C21 |
177.0 |
180.0 |
N13 |
C14 |
C15 |
H12 |
182.6 |
180.0 |
N13 |
C14 |
C21 |
C29 |
154.5 |
360.0 |
C12 |
C20 |
N16 |
C17 |
179.8 |
180.4 |
C17 |
N16 |
C15 |
H12 |
359.8 |
0.1 |
C12 |
C20 |
N16 |
C15 |
1.1 |
0.6 |
N16 |
C15 |
C14 |
C21 |
179.4 |
180.0 |
C14 |
C15 |
N16 |
H12 |
180.0 |
179.9 |
N13 |
C14 |
C15 |
C21 |
183.1 |
180.0 |
N16 |
C15 |
C14 |
H12 |
180.0 |
180.1 |
C15 |
C14 |
C21 |
C29 |
337.4 |
180.0 |
N13 |
C14 |
C21 |
C15 |
177.1 |
180.0 |
C21 |
C14 |
C15 |
H12 |
359.4 |
360.0 |
C22 |
C21 |
C14 |
C29 |
183.0 |
180.3 |
C14 |
C21 |
C29 |
C28 |
181.7 |
179.8 |
C14 |
C21 |
C29 |
H19 |
1.7 |
0.0 |
C14 |
C21 |
C22 |
C29 |
177.0 |
179.7 |
C22 |
C21 |
C29 |
C28 |
358.7 |
359.5 |
C22 |
C21 |
C29 |
H19 |
178.7 |
179.7 |
C23 |
C22 |
C21 |
C29 |
0.8 |
0.3 |
C22 |
C23 |
C24 |
C28 |
359.4 |
360.0 |
C22 |
C23 |
C24 |
C25 |
180.1 |
180.0 |
C24 |
C23 |
C22 |
H16 |
180.0 |
180.1 |
C24 |
C23 |
C22 |
H15 |
180.1 |
180.0 |
C22 |
C23 |
C24 |
H16 |
180.0 |
179.9 |
C25 |
C24 |
C23 |
C28 |
180.6 |
180.0 |
C23 |
C24 |
C28 |
N27 |
179.9 |
180.0 |
C23 |
C24 |
C25 |
N26 |
179.6 |
180.0 |
C23 |
C24 |
C25 |
H17 |
359.6 |
0.0 |
C21 |
C29 |
C28 |
H19 |
180.0 |
180.2 |
C29 |
C28 |
N27 |
H18 |
0.6 |
0.3 |
C21 |
C29 |
C28 |
C24 |
0.8 |
0.5 |
C23 |
C24 |
C28 |
C25 |
180.5 |
180.0 |
C28 |
C24 |
C23 |
H16 |
179.4 |
180.0 |
C28 |
C24 |
C25 |
N26 |
0.2 |
360.0 |
C28 |
C24 |
C25 |
H17 |
180.2 |
180.0 |
C24 |
C28 |
N27 |
H18 |
180.8 |
180.1 |
C23 |
C24 |
C25 |
C28 |
179.4 |
180.0 |
C25 |
C24 |
C23 |
H16 |
0.1 |
0.0 |
C25 |
C24 |
C28 |
N27 |
359.4 |
0.0 |
N26 |
C25 |
C24 |
H17 |
180.0 |
180.0 |
C21 |
C29 |
C28 |
N27 |
181.1 |
180.2 |
N26 |
C25 |
C24 |
C28 |
0.2 |
360.0 |
C24 |
C25 |
N26 |
H17 |
180.0 |
180.0 |
C24 |
C28 |
N27 |
N26 |
0.8 |
360.0 |
N27 |
N26 |
C25 |
H17 |
180.3 |
180.0 |
O06 |
C01 |
H1 |
H2 |
119.2 |
239.9 |
C02 |
C01 |
H1 |
H2 |
240.7 |
120.1 |
O06 |
C01 |
H2 |
H1 |
240.8 |
120.1 |
C02 |
C01 |
H2 |
H1 |
119.3 |
239.9 |
H3 |
C02 |
C01 |
H1 |
39.8 |
296.8 |
H3 |
C02 |
C01 |
H2 |
280.3 |
56.9 |
H3 |
C02 |
N03 |
C07 |
43.9 |
57.6 |
N03 |
C02 |
H3 |
H4 |
241.6 |
239.8 |
H4 |
C02 |
C01 |
H1 |
158.7 |
56.8 |
H4 |
C02 |
C01 |
H2 |
39.2 |
176.9 |
H4 |
C02 |
N03 |
C07 |
284.9 |
297.5 |
N03 |
C02 |
H4 |
H3 |
118.4 |
120.2 |
C05 |
C04 |
H5 |
H6 |
120.1 |
239.9 |
H5 |
C04 |
C05 |
H7 |
302.7 |
303.2 |
H5 |
C04 |
C05 |
H8 |
182.1 |
63.3 |
H5 |
C04 |
N03 |
C07 |
84.1 |
302.3 |
C05 |
C04 |
H6 |
H5 |
239.9 |
120.1 |
H6 |
C04 |
C05 |
H7 |
62.8 |
183.0 |
H6 |
C04 |
C05 |
H8 |
302.2 |
303.1 |
H6 |
C04 |
N03 |
C07 |
324.0 |
62.4 |
O06 |
C05 |
H7 |
H8 |
120.9 |
239.9 |
H7 |
C05 |
C04 |
H5 |
302.7 |
303.2 |
H7 |
C05 |
C04 |
H6 |
62.8 |
183.0 |
C04 |
C05 |
H7 |
H8 |
239.1 |
120.1 |
O06 |
C05 |
H8 |
H7 |
239.1 |
120.1 |
H8 |
C05 |
C04 |
H5 |
182.1 |
63.3 |
H8 |
C05 |
C04 |
H6 |
302.2 |
303.1 |
C04 |
C05 |
H8 |
H7 |
120.9 |
239.9 |
H9 |
C08 |
C09 |
C10 |
180.3 |
180.0 |
H9 |
C08 |
C09 |
H10 |
0.3 |
360.0 |
H9 |
C08 |
C07 |
C31 |
179.5 |
180.2 |
C08 |
C09 |
H10 |
C10 |
180.0 |
180.1 |
H10 |
C09 |
C08 |
H9 |
0.3 |
360.0 |
H10 |
C09 |
C10 |
N11 |
0.6 |
0.1 |
H10 |
C09 |
C10 |
C30 |
180.2 |
180.0 |
H11 |
N11 |
C10 |
C30 |
175.4 |
213.2 |
C10 |
N11 |
H11 |
C12 |
180.0 |
180.0 |
H11 |
N11 |
C12 |
C20 |
6.2 |
5.2 |
H11 |
N11 |
C12 |
N13 |
187.2 |
185.6 |
H12 |
C15 |
C14 |
C21 |
359.4 |
360.0 |
H14 |
C18 |
C17 |
H13 |
359.5 |
0.0 |
H15 |
C22 |
C21 |
C29 |
180.9 |
180.3 |
H15 |
C22 |
C23 |
C24 |
180.1 |
180.0 |
H15 |
C22 |
C23 |
H16 |
0.1 |
359.9 |
C22 |
C23 |
H16 |
C24 |
180.0 |
180.1 |
H16 |
C23 |
C22 |
H15 |
0.1 |
359.9 |
H16 |
C23 |
C24 |
C28 |
179.4 |
180.0 |
H16 |
C23 |
C24 |
C25 |
0.1 |
0.0 |
H17 |
C25 |
C24 |
C28 |
180.2 |
180.0 |
C24 |
C25 |
H17 |
N26 |
180.0 |
179.9 |
C21 |
C29 |
H19 |
C28 |
180.0 |
179.8 |
C07 |
C31 |
H21 |
C30 |
180.0 |
179.8 |
H21 |
C31 |
C30 |
H20 |
0.2 |
0.1 |