Atom Nomenclature for CG7

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for CG7

Atom Name (V3) Atom Name (V2)
OAB O1
CAV C1
OAC O2
CBD C2
CAP C3
CAW C4
CAA C5
CAI C6
CAK C7
CAZ C8
OAU O3
CBC C9
NAR N1
NAT N2
CBH C10
NAS N3
CBG C11
CAQ C12
CAY C13
CL1 CL1
CBF C14
CBB C15
CAO C16
CAM C17
CAN C18
CAL C19
CBA C20
CBE C21
CAJ C22
CAG C23
CAF C24
CAH C25
CAX C26
OAD O4
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19