PDB Chemical Component CG1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CG1
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
P |
OP3 |
1.600 |
1.611 |
OP3 |
C |
1.427 |
1.429 |
O5' |
P |
1.600 |
1.610 |
OP2 |
P |
1.481 |
1.480 |
P |
OP1 |
1.480 |
1.610 |
OP1 |
HOP1 |
0.950 |
0.967 |
C5' |
O5' |
1.426 |
1.429 |
C4' |
C5' |
1.513 |
1.530 |
H5'A |
C5' |
1.100 |
1.090 |
C5' |
H5' |
1.100 |
1.091 |
C3' |
C4' |
1.526 |
1.541 |
H4' |
C4' |
1.099 |
1.090 |
C4' |
O4' |
1.152 |
1.437 |
C1' |
O4' |
1.410 |
1.444 |
O3' |
C3' |
1.425 |
1.429 |
C2' |
C3' |
1.504 |
1.548 |
C3' |
H3' |
1.100 |
1.090 |
O3' |
HO3' |
0.949 |
0.967 |
O2' |
C2' |
1.410 |
1.429 |
H2' |
C2' |
1.100 |
1.090 |
C2' |
C1' |
1.526 |
1.551 |
O2' |
HO2' |
0.950 |
0.967 |
C1' |
N9 |
1.479 |
1.465 |
C1' |
H1' |
1.100 |
1.090 |
C4 |
N9 |
1.369 |
1.369 |
N9 |
C8 |
1.350 |
1.365 |
C8 |
N7 |
1.329 |
1.301 |
C8 |
H8 |
1.080 |
1.080 |
C5 |
N7 |
1.369 |
1.356 |
C4 |
C5 |
1.360 |
1.399 |
C5 |
C6 |
1.411 |
1.414 |
N1 |
C6 |
1.361 |
1.351 |
C6 |
O6 |
1.230 |
1.219 |
C2 |
N1 |
1.353 |
1.363 |
N1 |
HN1 |
1.000 |
0.970 |
N2 |
C2 |
1.331 |
1.372 |
N3 |
C2 |
1.346 |
1.315 |
N2 |
HN2 |
1.000 |
0.970 |
N2 |
HN2A |
1.000 |
0.969 |
N3 |
C4 |
1.362 |
1.338 |
C |
H |
1.100 |
1.090 |
C |
HA |
1.100 |
1.090 |
C |
HB |
1.100 |
1.090 |
Bond Angles for CG1
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
P |
OP3 |
C |
120.0 |
123.0 |
OP3 |
C |
H |
109.5 |
109.5 |
OP3 |
C |
HA |
109.4 |
109.5 |
OP3 |
C |
HB |
109.5 |
109.4 |
P |
OP1 |
HOP1 |
109.5 |
114.0 |
C4' |
C5' |
H5' |
109.2 |
109.4 |
O3' |
C3' |
H3' |
106.9 |
110.4 |
C2' |
C3' |
H3' |
110.9 |
110.5 |
O2' |
C2' |
C1' |
115.4 |
110.9 |
C2' |
C1' |
N9 |
113.5 |
110.6 |
C2' |
C1' |
H1' |
112.0 |
110.6 |
N9 |
C1' |
H1' |
103.6 |
110.7 |
C1' |
N9 |
C8 |
127.3 |
126.2 |
N9 |
C8 |
N7 |
112.6 |
109.8 |
N9 |
C8 |
H8 |
123.7 |
125.1 |
N7 |
C8 |
H8 |
123.7 |
125.1 |
C5 |
C6 |
O6 |
125.4 |
120.8 |
C2 |
N1 |
HN1 |
120.8 |
119.9 |
HN2 |
N2 |
HN2A |
125.5 |
120.1 |
H |
C |
HA |
109.5 |
109.5 |
H |
C |
HB |
109.5 |
109.5 |
HA |
C |
HB |
109.5 |
109.4 |
Torsion Angles for CG1
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
P |
OP3 |
C |
H |
347.8 |
300.0 |
P |
OP3 |
C |
HA |
107.8 |
60.0 |
P |
OP3 |
C |
HB |
227.8 |
180.0 |
H |
C |
OP3 |
HA |
240.0 |
240.0 |
H |
C |
OP3 |
HB |
120.0 |
120.0 |
HA |
C |
OP3 |
HB |
240.0 |
240.0 |
O5' |
P |
OP3 |
C |
163.3 |
185.0 |
O5' |
P |
OP1 |
HOP1 |
52.5 |
300.0 |
OP2 |
P |
OP3 |
C |
278.0 |
305.0 |
OP2 |
P |
OP1 |
HOP1 |
290.1 |
180.0 |
OP1 |
P |
OP3 |
C |
48.4 |
65.0 |
C3' |
C4' |
C5' |
H5' |
167.0 |
64.3 |
O4' |
C4' |
C5' |
H5' |
47.9 |
306.4 |
C2' |
C3' |
O3' |
H3' |
121.3 |
122.6 |
O3' |
C3' |
C2' |
H3' |
241.0 |
237.4 |
HO3' |
O3' |
C3' |
H3' |
262.7 |
302.5 |
O2' |
C2' |
C3' |
H3' |
133.6 |
102.2 |
O2' |
C2' |
C1' |
N9 |
228.0 |
273.8 |
O2' |
C2' |
C1' |
H1' |
344.9 |
36.7 |
H2' |
C2' |
C1' |
H1' |
106.6 |
160.3 |
C1' |
C2' |
C3' |
H3' |
252.9 |
220.4 |
N9 |
C1' |
C2' |
H1' |
243.1 |
237.0 |
C2' |
C1' |
N9 |
C8 |
275.1 |
265.0 |
HO2' |
O2' |
C2' |
C1' |
167.6 |
185.9 |
C2' |
C1' |
N9 |
H1' |
121.8 |
122.9 |
C1' |
N9 |
C8 |
N7 |
179.9 |
180.0 |
C1' |
N9 |
C8 |
H8 |
360.0 |
0.0 |
C2' |
C1' |
H1' |
N9 |
237.3 |
237.1 |
H1' |
C1' |
N9 |
C8 |
153.3 |
142.1 |
C4 |
N9 |
C1' |
H1' |
333.2 |
321.8 |
C4 |
N9 |
C8 |
H8 |
180.1 |
180.2 |
C8 |
N9 |
C1' |
H1' |
153.3 |
142.1 |
N7 |
C8 |
N9 |
H8 |
180.0 |
180.0 |
N9 |
C8 |
N7 |
H8 |
180.0 |
180.0 |
N9 |
C8 |
H8 |
N7 |
180.0 |
180.0 |
C5 |
N7 |
C8 |
H8 |
179.9 |
180.0 |
N2 |
C2 |
N1 |
HN1 |
360.0 |
360.0 |
N3 |
C2 |
N1 |
HN1 |
180.1 |
180.0 |
OP3 |
C |
H |
HA |
120.0 |
120.1 |
OP3 |
C |
H |
HB |
240.0 |
240.0 |
HA |
C |
H |
HB |
120.0 |
120.0 |
OP3 |
C |
HA |
H |
240.0 |
240.0 |
OP3 |
C |
HA |
HB |
120.0 |
120.0 |
H |
C |
HA |
HB |
240.0 |
240.0 |
OP3 |
C |
HB |
H |
120.0 |
120.0 |
OP3 |
C |
HB |
HA |
240.0 |
240.0 |
H |
C |
HB |
HA |
120.0 |
120.0 |