PDB Chemical Component CG1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CG1

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP3 1.600 1.611
OP3 C 1.427 1.429
O5' P 1.600 1.610
OP2 P 1.481 1.480
P OP1 1.480 1.610
OP1 HOP1 0.950 0.967
C5' O5' 1.426 1.429
C4' C5' 1.513 1.530
H5'A C5' 1.100 1.090
C5' H5' 1.100 1.091
C3' C4' 1.526 1.541
H4' C4' 1.099 1.090
C4' O4' 1.152 1.437
C1' O4' 1.410 1.444
O3' C3' 1.425 1.429
C2' C3' 1.504 1.548
C3' H3' 1.100 1.090
O3' HO3' 0.949 0.967
O2' C2' 1.410 1.429
H2' C2' 1.100 1.090
C2' C1' 1.526 1.551
O2' HO2' 0.950 0.967
C1' N9 1.479 1.465
C1' H1' 1.100 1.090
C4 N9 1.369 1.369
N9 C8 1.350 1.365
C8 N7 1.329 1.301
C8 H8 1.080 1.080
C5 N7 1.369 1.356
C4 C5 1.360 1.399
C5 C6 1.411 1.414
N1 C6 1.361 1.351
C6 O6 1.230 1.219
C2 N1 1.353 1.363
N1 HN1 1.000 0.970
N2 C2 1.331 1.372
N3 C2 1.346 1.315
N2 HN2 1.000 0.970
N2 HN2A 1.000 0.969
N3 C4 1.362 1.338
C H 1.100 1.090
C HA 1.100 1.090
C HB 1.100 1.090

Bond Angles for CG1

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP3 C 120.0 123.0
OP3 C H 109.5 109.5
OP3 C HA 109.4 109.5
OP3 C HB 109.5 109.4
P OP1 HOP1 109.5 114.0
C4' C5' H5' 109.2 109.4
O3' C3' H3' 106.9 110.4
C2' C3' H3' 110.9 110.5
O2' C2' C1' 115.4 110.9
C2' C1' N9 113.5 110.6
C2' C1' H1' 112.0 110.6
N9 C1' H1' 103.6 110.7
C1' N9 C8 127.3 126.2
N9 C8 N7 112.6 109.8
N9 C8 H8 123.7 125.1
N7 C8 H8 123.7 125.1
C5 C6 O6 125.4 120.8
C2 N1 HN1 120.8 119.9
HN2 N2 HN2A 125.5 120.1
H C HA 109.5 109.5
H C HB 109.5 109.5
HA C HB 109.5 109.4

Torsion Angles for CG1

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
P OP3 C H 347.8 300.0
P OP3 C HA 107.8 60.0
P OP3 C HB 227.8 180.0
H C OP3 HA 240.0 240.0
H C OP3 HB 120.0 120.0
HA C OP3 HB 240.0 240.0
O5' P OP3 C 163.3 185.0
O5' P OP1 HOP1 52.5 300.0
OP2 P OP3 C 278.0 305.0
OP2 P OP1 HOP1 290.1 180.0
OP1 P OP3 C 48.4 65.0
C3' C4' C5' H5' 167.0 64.3
O4' C4' C5' H5' 47.9 306.4
C2' C3' O3' H3' 121.3 122.6
O3' C3' C2' H3' 241.0 237.4
HO3' O3' C3' H3' 262.7 302.5
O2' C2' C3' H3' 133.6 102.2
O2' C2' C1' N9 228.0 273.8
O2' C2' C1' H1' 344.9 36.7
H2' C2' C1' H1' 106.6 160.3
C1' C2' C3' H3' 252.9 220.4
N9 C1' C2' H1' 243.1 237.0
C2' C1' N9 C8 275.1 265.0
HO2' O2' C2' C1' 167.6 185.9
C2' C1' N9 H1' 121.8 122.9
C1' N9 C8 N7 179.9 180.0
C1' N9 C8 H8 360.0 0.0
C2' C1' H1' N9 237.3 237.1
H1' C1' N9 C8 153.3 142.1
C4 N9 C1' H1' 333.2 321.8
C4 N9 C8 H8 180.1 180.2
C8 N9 C1' H1' 153.3 142.1
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 H8 180.0 180.0
N9 C8 H8 N7 180.0 180.0
C5 N7 C8 H8 179.9 180.0
N2 C2 N1 HN1 360.0 360.0
N3 C2 N1 HN1 180.1 180.0
OP3 C H HA 120.0 120.1
OP3 C H HB 240.0 240.0
HA C H HB 120.0 120.0
OP3 C HA H 240.0 240.0
OP3 C HA HB 120.0 120.0
H C HA HB 240.0 240.0
OP3 C HB H 120.0 120.0
OP3 C HB HA 240.0 240.0
H C HB HA 120.0 120.0