PDB Chemical Component CFZ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CFZ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O2P |
P |
1.486 |
1.479 |
| P |
O5' |
1.591 |
1.610 |
| P |
O1P |
1.486 |
1.610 |
| P |
O3P |
1.602 |
1.610 |
| C6 |
N1 |
1.367 |
1.362 |
| C2 |
N1 |
1.397 |
1.345 |
| N1 |
C1' |
1.472 |
1.465 |
| N3 |
C2 |
1.352 |
1.332 |
| C2 |
O2 |
1.240 |
1.220 |
| C4 |
N3 |
1.333 |
1.327 |
| N4 |
C4 |
1.335 |
1.376 |
| C4 |
C5 |
1.425 |
1.409 |
| N4 |
HN4 |
1.000 |
0.970 |
| N4 |
HN4A |
1.000 |
0.970 |
| C5 |
C6 |
1.339 |
1.354 |
| C5 |
H5 |
1.080 |
1.081 |
| C6 |
H6 |
1.080 |
1.080 |
| C2' |
C1' |
1.524 |
1.545 |
| C1' |
O4' |
1.425 |
1.445 |
| C1' |
H1' |
1.100 |
1.090 |
| O1P |
HO1P |
0.950 |
0.967 |
| C3' |
C2' |
1.525 |
1.545 |
| C2' |
F2' |
1.414 |
1.399 |
| C2' |
H2' |
1.100 |
1.090 |
| C3' |
O3' |
1.428 |
1.429 |
| C3' |
C4' |
1.519 |
1.545 |
| C3' |
H3' |
1.100 |
1.090 |
| O3' |
HO3' |
0.950 |
0.967 |
| O3P |
HO3P |
0.950 |
0.967 |
| O4' |
C4' |
1.457 |
1.444 |
| C5' |
C4' |
1.507 |
1.530 |
| C4' |
H4' |
1.100 |
1.090 |
| O5' |
C5' |
1.416 |
1.429 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'A |
1.100 |
1.090 |
Bond Angles for CFZ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2P |
P |
O5' |
108.1 |
109.4 |
| O2P |
P |
O3P |
108.6 |
109.5 |
| O1P |
P |
O5' |
108.7 |
109.5 |
| O3P |
P |
O5' |
103.9 |
109.5 |
| P |
O5' |
C5' |
120.3 |
123.0 |
| O1P |
P |
O3P |
106.4 |
109.5 |
| P |
O1P |
HO1P |
109.5 |
114.0 |
| P |
O3P |
HO3P |
109.5 |
113.9 |
| C6 |
N1 |
C1' |
120.9 |
119.8 |
| C2 |
N1 |
C1' |
118.8 |
119.8 |
| N1 |
C1' |
O4' |
108.7 |
110.4 |
| N1 |
C1' |
H1' |
106.4 |
110.3 |
| N4 |
C4 |
C5 |
120.2 |
120.2 |
| C4 |
C5 |
C6 |
117.4 |
119.0 |
| C4 |
C5 |
H5 |
121.3 |
120.5 |
| HN4 |
N4 |
HN4A |
120.0 |
119.9 |
| C6 |
C5 |
H5 |
121.3 |
120.5 |
| C5 |
C6 |
H6 |
119.5 |
120.4 |
| C2' |
C1' |
O4' |
105.9 |
104.8 |
| C2' |
C1' |
H1' |
109.1 |
110.5 |
| O4' |
C1' |
H1' |
113.7 |
110.4 |
| C1' |
O4' |
C4' |
109.7 |
105.3 |
| C3' |
C2' |
H2' |
114.3 |
110.6 |
| F2' |
C2' |
H2' |
104.0 |
110.5 |
| O3' |
C3' |
C4' |
112.5 |
110.5 |
| O3' |
C3' |
H3' |
102.1 |
110.5 |
| C3' |
O3' |
HO3' |
109.5 |
113.9 |
| C4' |
C3' |
H3' |
115.0 |
110.6 |
| C3' |
C4' |
H4' |
108.7 |
110.4 |
| O4' |
C4' |
H4' |
116.9 |
110.4 |
| C5' |
C4' |
H4' |
102.4 |
110.4 |
| O5' |
C5' |
H5' |
109.2 |
109.5 |
| O5' |
C5' |
H5'A |
109.2 |
109.4 |
| H5' |
C5' |
H5'A |
109.7 |
109.5 |
Torsion Angles for CFZ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1P |
P |
O2P |
O5' |
125.4 |
240.0 |
| O3P |
P |
O2P |
O5' |
247.9 |
120.0 |
| O2P |
P |
O5' |
C5' |
173.6 |
55.0 |
| O1P |
P |
O2P |
O3P |
237.5 |
120.0 |
| O2P |
P |
O1P |
HO1P |
360.0 |
300.0 |
| O2P |
P |
O3P |
HO3P |
360.0 |
180.0 |
| O2P |
P |
O5' |
O3P |
244.8 |
120.0 |
| O1P |
P |
O5' |
O3P |
113.0 |
240.0 |
| O5' |
P |
O1P |
HO1P |
125.1 |
180.0 |
| O5' |
P |
O3P |
HO3P |
245.1 |
300.0 |
| P |
O5' |
C5' |
H5' |
45.9 |
60.0 |
| P |
O5' |
C5' |
H5'A |
286.0 |
300.0 |
| O2P |
P |
O1P |
O5' |
234.9 |
120.0 |
| O2P |
P |
O1P |
O3P |
123.5 |
240.0 |
| O3P |
P |
O1P |
O5' |
111.4 |
240.0 |
| O1P |
P |
O5' |
C5' |
41.8 |
175.0 |
| O1P |
P |
O3P |
HO3P |
130.4 |
60.0 |
| O2P |
P |
O3P |
O5' |
114.9 |
240.0 |
| O1P |
P |
O3P |
O5' |
245.3 |
120.0 |
| O3P |
P |
O5' |
C5' |
288.8 |
295.0 |
| O3P |
P |
O1P |
HO1P |
236.4 |
60.0 |
| C2 |
N1 |
C6 |
C1' |
179.5 |
179.7 |
| C6 |
N1 |
C1' |
O4' |
14.3 |
233.3 |
| C6 |
N1 |
C1' |
H1' |
137.0 |
355.5 |
| C6 |
N1 |
C2 |
C1' |
180.5 |
180.3 |
| C2 |
N1 |
C1' |
O4' |
194.8 |
53.6 |
| C2 |
N1 |
C1' |
H1' |
317.5 |
175.8 |
| C2' |
C1' |
N1 |
O4' |
242.6 |
244.6 |
| C2' |
C1' |
N1 |
H1' |
119.8 |
122.4 |
| O4' |
C1' |
N1 |
H1' |
237.3 |
237.8 |
| N1 |
C1' |
O4' |
C4' |
240.3 |
200.6 |
| N3 |
C2 |
N1 |
C1' |
178.3 |
179.9 |
| O2 |
C2 |
N1 |
C1' |
358.2 |
359.9 |
| N4 |
C4 |
C5 |
C6 |
179.2 |
179.6 |
| N4 |
C4 |
C5 |
H5 |
359.2 |
359.9 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.7 |
| C4 |
C5 |
C6 |
H6 |
179.9 |
180.0 |
| HN4 |
N4 |
C4 |
C5 |
180.1 |
180.0 |
| HN4A |
N4 |
C4 |
C5 |
0.1 |
0.1 |
| C5 |
C6 |
N1 |
C1' |
181.5 |
179.7 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.3 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
179.7 |
| H5 |
C5 |
C6 |
H6 |
359.9 |
359.7 |
| H6 |
C6 |
N1 |
C1' |
1.5 |
0.3 |
| H6 |
C6 |
C5 |
H5 |
359.9 |
359.7 |
| N1 |
C1' |
C2' |
O4' |
119.0 |
118.8 |
| N1 |
C1' |
C2' |
H1' |
241.7 |
237.7 |
| O4' |
C1' |
C2' |
H1' |
122.7 |
118.9 |
| C2' |
C1' |
O4' |
C4' |
2.3 |
319.5 |
| N1 |
C1' |
O4' |
H1' |
118.2 |
122.2 |
| C2' |
C1' |
O4' |
H1' |
240.2 |
241.0 |
| C1' |
O4' |
C4' |
H4' |
265.8 |
281.7 |
| N1 |
C1' |
H1' |
O4' |
240.5 |
237.8 |
| C2' |
C1' |
H1' |
O4' |
118.0 |
115.4 |
| H1' |
C1' |
O4' |
C4' |
122.1 |
78.4 |
| HO1P |
O1P |
P |
O5' |
125.1 |
180.0 |
| HO1P |
O1P |
P |
O3P |
236.4 |
60.0 |
| C3' |
C2' |
C1' |
O4' |
331.7 |
24.0 |
| C3' |
C2' |
C1' |
H1' |
209.0 |
265.1 |
| F2' |
C2' |
C3' |
H2' |
117.6 |
122.7 |
| F2' |
C2' |
C1' |
O4' |
90.9 |
142.6 |
| F2' |
C2' |
C1' |
H1' |
328.1 |
23.7 |
| C3' |
C2' |
F2' |
H2' |
236.4 |
237.3 |
| H2' |
C2' |
C1' |
O4' |
208.5 |
265.2 |
| H2' |
C2' |
C1' |
H1' |
85.8 |
146.3 |
| O3' |
C3' |
C2' |
H2' |
285.1 |
237.3 |
| C4' |
C3' |
O3' |
H3' |
236.2 |
237.3 |
| O3' |
C3' |
C4' |
H4' |
322.4 |
336.2 |
| C1' |
O4' |
C4' |
C3' |
24.9 |
40.5 |
| C4' |
C3' |
C2' |
H2' |
164.9 |
118.7 |
| O3' |
C3' |
C4' |
H3' |
116.3 |
122.6 |
| C4' |
C3' |
O3' |
HO3' |
292.9 |
176.1 |
| O4' |
C4' |
C3' |
H4' |
235.3 |
241.2 |
| C5' |
C4' |
C3' |
H4' |
115.5 |
122.3 |
| H3' |
C3' |
C2' |
H2' |
41.5 |
360.0 |
| O3' |
C3' |
H3' |
C4' |
237.8 |
237.4 |
| H3' |
C3' |
O3' |
HO3' |
56.8 |
298.8 |
| H3' |
C3' |
C4' |
H4' |
206.1 |
213.6 |
| HO3' |
O3' |
C3' |
C4' |
292.9 |
176.1 |
| HO3' |
O3' |
C3' |
H3' |
56.8 |
298.8 |
| HO3P |
O3P |
P |
O5' |
245.1 |
300.0 |
| C4' |
O4' |
C1' |
H1' |
122.1 |
78.4 |
| O4' |
C4' |
C3' |
H3' |
81.5 |
94.7 |
| C3' |
C4' |
O4' |
H4' |
119.1 |
118.8 |
| C5' |
C4' |
O4' |
H4' |
244.4 |
237.7 |
| P |
O5' |
C5' |
C4' |
165.9 |
180.0 |
| C5' |
C4' |
C3' |
H3' |
321.7 |
335.8 |
| C3' |
C4' |
C5' |
H4' |
241.1 |
237.7 |
| O4' |
C4' |
C5' |
H4' |
124.6 |
122.3 |
| H4' |
C4' |
C3' |
H3' |
206.1 |
213.6 |
| O5' |
C5' |
C4' |
H4' |
176.5 |
307.3 |
| H5' |
C5' |
O5' |
H5'A |
120.0 |
120.0 |
| H5' |
C5' |
C4' |
H4' |
296.5 |
67.3 |
| O5' |
C5' |
H5' |
H5'A |
240.4 |
240.1 |
| H5'A |
C5' |
C4' |
H4' |
56.5 |
187.3 |
| O5' |
C5' |
H5'A |
H5' |
119.6 |
119.9 |