Atom Nomenclature for CFQ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for CFQ

Atom Name (V3) Atom Name (V2)
AS AS
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
O1 O1
C6 C6
C14 C14
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
N2 N2
O2 O2
O3 O3
F1 F1
F2 F2
F3 F3
H1C1 1H1C
H1C2 2H1C
H1C3 3H1C
H2C1 1H2C
H2C2 2H2C
H2C3 3H2C
H3C1 1H3C
H3C2 2H3C
H3C3 3H3C
H4C1 1H4C
H4C2 2H4C
H5C1 1H5C
H5C2 2H5C
H6 H6
H12 H12
H9 H9
H10 H10
H11 H11
H2 H2