PDB Chemical Component CFL

Ideal Model

Chemical Description

Name 4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)pyrimidin-2(1H)-one
Synonyms 2'-FLUORO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
Formula C9 H13 F N3 O7 P
Formal charge 0
Molecular weight 325.188 g/mol
Component type DNA LINKING
Nonstandard Parent Id DC

Chemical features

Atom count 34
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms O3P
Bond count 35
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)pyrimidin-2(1H)-one
Systematic name (OpenEye OEToolkits) [(2R,3R,4S,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-4-fluoro-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]2F
SMILES (CACTVS) NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2F
Stereo SMILES (OpenEye) C1=CN(C(=O)N=C1N)[C@H]2[C@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)F
InChI descriptor InChI=1S/C9H13FN3O7P/c10-6-7(14)4(3-19-21(16,17)18)20-8(6)13-2-1-5(11)12-9(13)15/h1-2,4,6-8,14H,3H2,(H2,11,12,15)(H2,16,17,18)/t4-,6+,7-,8-/m1/s1
InChIKey descriptor KTAATIGPZHTGOP-PXBUCIJWSA-N

Status Information

Last modified 2011-06-04
Created 2006-09-07
Release status REL
Processing site RCSB