PDB Chemical Component CFL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CFL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O3P |
P |
1.616 |
1.610 |
| O3P |
HO3P |
0.950 |
0.967 |
| P |
O1P |
1.478 |
1.610 |
| P |
O2P |
1.477 |
1.480 |
| P |
O5' |
1.618 |
1.610 |
| O1P |
HO1P |
0.950 |
0.966 |
| O5' |
C5' |
1.446 |
1.429 |
| C5' |
C4' |
1.532 |
1.530 |
| C5' |
H5'1 |
1.100 |
1.090 |
| C5' |
H5'2 |
1.100 |
1.090 |
| C4' |
O4' |
1.429 |
1.445 |
| C4' |
C3' |
1.527 |
1.545 |
| C4' |
H4' |
1.099 |
1.090 |
| O4' |
C1' |
1.430 |
1.444 |
| C3' |
O3' |
1.436 |
1.429 |
| C3' |
C2' |
1.501 |
1.547 |
| C3' |
H3' |
1.100 |
1.090 |
| O3' |
HO3' |
0.950 |
0.966 |
| C2' |
C1' |
1.527 |
1.545 |
| C2' |
F |
1.366 |
1.399 |
| C2' |
H2' |
1.100 |
1.090 |
| C1' |
N1 |
1.481 |
1.465 |
| C1' |
H1' |
1.100 |
1.090 |
| N1 |
C2 |
1.390 |
1.346 |
| N1 |
C6 |
1.374 |
1.363 |
| C2 |
O2 |
1.229 |
1.220 |
| C2 |
N3 |
1.362 |
1.332 |
| N3 |
C4 |
1.338 |
1.326 |
| C4 |
N4 |
1.325 |
1.376 |
| C4 |
C5 |
1.422 |
1.410 |
| N4 |
HN41 |
1.000 |
0.970 |
| N4 |
HN42 |
1.000 |
0.969 |
| C5 |
C6 |
1.338 |
1.354 |
| C5 |
H5 |
1.080 |
1.080 |
| C6 |
H6 |
1.080 |
1.079 |
Bond Angles for CFL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| P |
O3P |
HO3P |
109.5 |
106.8 |
| O3P |
P |
O1P |
107.9 |
109.5 |
| O3P |
P |
O2P |
107.8 |
109.4 |
| O3P |
P |
O5' |
103.3 |
109.5 |
| O1P |
P |
O2P |
119.9 |
109.5 |
| O1P |
P |
O5' |
108.5 |
109.5 |
| P |
O1P |
HO1P |
109.5 |
106.8 |
| O2P |
P |
O5' |
108.2 |
109.5 |
| P |
O5' |
C5' |
121.8 |
106.8 |
| O5' |
C5' |
C4' |
111.2 |
109.5 |
| O5' |
C5' |
H5'1 |
108.9 |
109.5 |
| O5' |
C5' |
H5'2 |
108.5 |
109.5 |
| C4' |
C5' |
H5'1 |
108.9 |
109.5 |
| C4' |
C5' |
H5'2 |
108.5 |
109.5 |
| C5' |
C4' |
O4' |
110.2 |
110.4 |
| C5' |
C4' |
C3' |
111.5 |
110.4 |
| C5' |
C4' |
H4' |
106.8 |
110.3 |
| H5'1 |
C5' |
H5'2 |
110.8 |
109.4 |
| O4' |
C4' |
C3' |
107.1 |
104.8 |
| O4' |
C4' |
H4' |
111.3 |
110.4 |
| C4' |
O4' |
C1' |
108.0 |
105.3 |
| C3' |
C4' |
H4' |
110.0 |
110.4 |
| C4' |
C3' |
O3' |
111.3 |
110.5 |
| C4' |
C3' |
C2' |
105.7 |
104.1 |
| C4' |
C3' |
H3' |
111.4 |
110.6 |
| O4' |
C1' |
C2' |
106.9 |
104.9 |
| O4' |
C1' |
N1 |
109.4 |
110.4 |
| O4' |
C1' |
H1' |
111.9 |
110.4 |
| O3' |
C3' |
C2' |
111.2 |
110.5 |
| O3' |
C3' |
H3' |
105.9 |
110.5 |
| C3' |
O3' |
HO3' |
109.5 |
106.8 |
| C2' |
C3' |
H3' |
111.5 |
110.6 |
| C3' |
C2' |
C1' |
105.1 |
104.0 |
| C3' |
C2' |
F |
110.4 |
110.5 |
| C3' |
C2' |
H2' |
112.2 |
110.5 |
| C1' |
C2' |
F |
111.1 |
110.5 |
| C1' |
C2' |
H2' |
111.6 |
110.7 |
| C2' |
C1' |
N1 |
111.6 |
110.4 |
| C2' |
C1' |
H1' |
109.7 |
110.4 |
| F |
C2' |
H2' |
106.5 |
110.5 |
| N1 |
C1' |
H1' |
107.3 |
110.3 |
| C1' |
N1 |
C2 |
118.4 |
119.8 |
| C1' |
N1 |
C6 |
120.5 |
119.9 |
| C2 |
N1 |
C6 |
121.1 |
120.4 |
| N1 |
C2 |
O2 |
120.5 |
119.5 |
| N1 |
C2 |
N3 |
118.1 |
121.1 |
| N1 |
C6 |
C5 |
120.7 |
119.3 |
| N1 |
C6 |
H6 |
119.7 |
120.3 |
| O2 |
C2 |
N3 |
121.4 |
119.4 |
| C2 |
N3 |
C4 |
121.0 |
120.7 |
| N3 |
C4 |
N4 |
119.4 |
120.2 |
| N3 |
C4 |
C5 |
121.2 |
119.6 |
| N4 |
C4 |
C5 |
119.4 |
120.2 |
| C4 |
N4 |
HN41 |
109.4 |
119.9 |
| C4 |
N4 |
HN42 |
125.3 |
120.0 |
| C4 |
C5 |
C6 |
117.9 |
119.0 |
| C4 |
C5 |
H5 |
121.0 |
120.5 |
| HN41 |
N4 |
HN42 |
125.3 |
120.0 |
| C6 |
C5 |
H5 |
121.0 |
120.5 |
| C5 |
C6 |
H6 |
119.7 |
120.4 |
Torsion Angles for CFL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1P |
P |
O3P |
O2P |
130.8 |
240.0 |
| O1P |
P |
O3P |
O5' |
245.3 |
120.0 |
| O3P |
P |
O1P |
HO1P |
17.1 |
60.0 |
| O2P |
P |
O3P |
O5' |
114.4 |
240.0 |
| O3P |
P |
O5' |
C5' |
272.5 |
295.0 |
| HO3P |
O3P |
P |
O1P |
290.9 |
60.0 |
| HO3P |
O3P |
P |
O2P |
160.1 |
180.0 |
| HO3P |
O3P |
P |
O5' |
45.7 |
300.0 |
| O1P |
P |
O3P |
HO3P |
290.9 |
60.0 |
| O3P |
P |
O1P |
O2P |
236.2 |
119.9 |
| O3P |
P |
O1P |
O5' |
111.3 |
240.0 |
| O2P |
P |
O1P |
O5' |
235.1 |
120.1 |
| O1P |
P |
O5' |
C5' |
26.9 |
175.0 |
| O2P |
P |
O3P |
HO3P |
160.1 |
180.0 |
| O3P |
P |
O2P |
O1P |
123.9 |
240.0 |
| O3P |
P |
O2P |
O5' |
248.9 |
120.0 |
| O1P |
P |
O2P |
O5' |
125.0 |
239.9 |
| O2P |
P |
O1P |
HO1P |
140.9 |
300.0 |
| O2P |
P |
O5' |
C5' |
158.4 |
55.0 |
| O5' |
P |
O3P |
HO3P |
45.7 |
300.0 |
| O3P |
P |
O5' |
O1P |
245.6 |
120.0 |
| O3P |
P |
O5' |
O2P |
114.1 |
240.0 |
| O1P |
P |
O5' |
O2P |
228.5 |
120.0 |
| O5' |
P |
O1P |
HO1P |
265.8 |
180.0 |
| P |
O5' |
C5' |
C4' |
178.1 |
180.0 |
| P |
O5' |
C5' |
H5'1 |
298.1 |
60.0 |
| P |
O5' |
C5' |
H5'2 |
58.8 |
300.0 |
| HO1P |
O1P |
P |
O2P |
140.9 |
300.0 |
| HO1P |
O1P |
P |
O5' |
265.8 |
180.0 |
| C4' |
C5' |
O5' |
H5'1 |
240.0 |
120.0 |
| C4' |
C5' |
O5' |
H5'2 |
119.3 |
240.0 |
| O5' |
C5' |
C4' |
O4' |
315.0 |
66.5 |
| O5' |
C5' |
C4' |
C3' |
73.8 |
181.9 |
| O5' |
C5' |
C4' |
H4' |
194.0 |
304.2 |
| H5'1 |
C5' |
O5' |
H5'2 |
239.3 |
120.0 |
| O5' |
C5' |
C4' |
H5'1 |
120.0 |
240.0 |
| O5' |
C5' |
C4' |
H5'2 |
240.7 |
120.0 |
| H5'1 |
C5' |
C4' |
H5'2 |
120.7 |
240.0 |
| O4' |
C4' |
C5' |
C3' |
241.2 |
244.6 |
| O4' |
C4' |
C5' |
H4' |
121.0 |
122.3 |
| C5' |
C4' |
O4' |
C1' |
146.9 |
159.5 |
| C3' |
C4' |
C5' |
H4' |
239.8 |
237.7 |
| C5' |
C4' |
C3' |
O3' |
105.3 |
98.4 |
| C5' |
C4' |
C3' |
C2' |
226.0 |
217.0 |
| C5' |
C4' |
C3' |
H3' |
347.3 |
335.8 |
| O5' |
C5' |
H5'1 |
C4' |
238.6 |
120.0 |
| O5' |
C5' |
H5'1 |
H5'2 |
119.3 |
240.0 |
| C4' |
C5' |
H5'1 |
H5'2 |
240.7 |
120.0 |
| H5'1 |
C5' |
C4' |
O4' |
195.0 |
186.5 |
| H5'1 |
C5' |
C4' |
C3' |
313.8 |
301.9 |
| H5'1 |
C5' |
C4' |
H4' |
74.0 |
64.2 |
| O5' |
C5' |
H5'2 |
C4' |
120.9 |
240.0 |
| O5' |
C5' |
H5'2 |
H5'1 |
240.5 |
120.0 |
| C4' |
C5' |
H5'2 |
H5'1 |
119.6 |
240.0 |
| H5'2 |
C5' |
C4' |
O4' |
74.3 |
306.4 |
| H5'2 |
C5' |
C4' |
C3' |
193.1 |
61.9 |
| H5'2 |
C5' |
C4' |
H4' |
313.3 |
184.1 |
| O4' |
C4' |
C5' |
H5'1 |
195.0 |
186.5 |
| O4' |
C4' |
C5' |
H5'2 |
74.3 |
306.4 |
| C5' |
C4' |
O4' |
C3' |
121.5 |
118.9 |
| C5' |
C4' |
O4' |
H4' |
241.7 |
237.8 |
| C3' |
C4' |
O4' |
H4' |
120.2 |
118.8 |
| O4' |
C4' |
C3' |
O3' |
225.9 |
217.3 |
| O4' |
C4' |
C3' |
C2' |
346.7 |
335.9 |
| O4' |
C4' |
C3' |
H3' |
107.9 |
94.7 |
| C4' |
O4' |
C1' |
C2' |
332.7 |
319.6 |
| C4' |
O4' |
C1' |
N1 |
211.6 |
200.6 |
| C4' |
O4' |
C1' |
H1' |
92.8 |
78.5 |
| C3' |
C4' |
C5' |
H5'1 |
313.8 |
301.9 |
| C3' |
C4' |
C5' |
H5'2 |
193.1 |
61.9 |
| C5' |
C4' |
C3' |
O4' |
239.4 |
241.1 |
| C5' |
C4' |
C3' |
H4' |
118.3 |
122.2 |
| O4' |
C4' |
C3' |
H4' |
239.0 |
241.1 |
| C3' |
C4' |
O4' |
C1' |
25.5 |
40.5 |
| O3' |
C3' |
C4' |
C2' |
239.2 |
241.4 |
| O3' |
C3' |
C4' |
H3' |
118.0 |
122.6 |
| C4' |
C3' |
O3' |
HO3' |
211.3 |
180.0 |
| C2' |
C3' |
C4' |
H3' |
238.7 |
241.3 |
| C4' |
C3' |
C2' |
C1' |
357.2 |
0.2 |
| C4' |
C3' |
C2' |
F |
117.1 |
118.8 |
| C4' |
C3' |
C2' |
H2' |
235.7 |
241.4 |
| H4' |
C4' |
C5' |
H5'1 |
74.0 |
64.2 |
| H4' |
C4' |
C5' |
H5'2 |
313.3 |
184.1 |
| C5' |
C4' |
H4' |
O4' |
120.3 |
122.3 |
| C5' |
C4' |
H4' |
C3' |
238.8 |
237.7 |
| O4' |
C4' |
H4' |
C3' |
118.5 |
115.4 |
| H4' |
C4' |
O4' |
C1' |
265.2 |
281.7 |
| H4' |
C4' |
C3' |
O3' |
346.9 |
336.1 |
| H4' |
C4' |
C3' |
C2' |
107.7 |
94.8 |
| H4' |
C4' |
C3' |
H3' |
229.0 |
213.5 |
| C1' |
O4' |
C4' |
C3' |
25.5 |
40.5 |
| C1' |
O4' |
C4' |
H4' |
265.2 |
281.7 |
| C3' |
C2' |
C1' |
O4' |
18.1 |
23.8 |
| O4' |
C1' |
C2' |
F |
258.7 |
265.2 |
| O4' |
C1' |
C2' |
H2' |
140.0 |
142.5 |
| C2' |
C1' |
O4' |
N1 |
121.0 |
118.9 |
| C2' |
C1' |
O4' |
H1' |
239.8 |
241.1 |
| N1 |
C1' |
O4' |
H1' |
118.8 |
122.2 |
| O4' |
C1' |
N1 |
C2 |
223.9 |
52.0 |
| O4' |
C1' |
N1 |
C6 |
43.8 |
232.0 |
| O3' |
C3' |
C4' |
H4' |
346.9 |
336.1 |
| C4' |
C3' |
O3' |
C2' |
117.5 |
114.6 |
| C4' |
C3' |
O3' |
H3' |
238.8 |
237.3 |
| C2' |
C3' |
O3' |
H3' |
121.3 |
122.7 |
| O3' |
C3' |
C2' |
C1' |
118.0 |
118.8 |
| O3' |
C3' |
C2' |
F |
237.9 |
237.4 |
| O3' |
C3' |
C2' |
H2' |
356.5 |
0.0 |
| C2' |
C3' |
C4' |
H4' |
107.7 |
94.8 |
| C4' |
C3' |
C2' |
O3' |
239.1 |
241.4 |
| C4' |
C3' |
C2' |
H3' |
121.2 |
118.7 |
| O4' |
C1' |
C2' |
C3' |
18.1 |
23.8 |
| O3' |
C3' |
C2' |
H3' |
242.0 |
237.4 |
| C2' |
C3' |
O3' |
HO3' |
93.8 |
65.3 |
| C1' |
C2' |
C3' |
F |
240.1 |
241.4 |
| C1' |
C2' |
C3' |
H2' |
121.5 |
118.8 |
| C3' |
C2' |
C1' |
N1 |
137.7 |
142.7 |
| C3' |
C2' |
C1' |
H1' |
256.5 |
265.0 |
| F |
C2' |
C3' |
H2' |
241.4 |
237.4 |
| H3' |
C3' |
C4' |
H4' |
229.0 |
213.5 |
| C4' |
C3' |
H3' |
O3' |
121.2 |
122.6 |
| C4' |
C3' |
H3' |
C2' |
242.2 |
245.3 |
| O3' |
C3' |
H3' |
C2' |
121.0 |
122.7 |
| H3' |
C3' |
O3' |
HO3' |
332.6 |
302.6 |
| H3' |
C3' |
C2' |
C1' |
236.0 |
241.4 |
| H3' |
C3' |
C2' |
F |
355.9 |
0.1 |
| H3' |
C3' |
C2' |
H2' |
114.5 |
122.7 |
| HO3' |
O3' |
C3' |
C2' |
93.8 |
65.3 |
| HO3' |
O3' |
C3' |
H3' |
332.6 |
302.6 |
| O4' |
C1' |
C2' |
N1 |
240.4 |
241.1 |
| O4' |
C1' |
C2' |
H1' |
121.6 |
118.9 |
| C1' |
C2' |
C3' |
H3' |
236.0 |
241.4 |
| C3' |
C2' |
C1' |
F |
119.4 |
118.6 |
| C3' |
C2' |
C1' |
H2' |
238.1 |
241.3 |
| F |
C2' |
C1' |
H2' |
118.6 |
122.7 |
| N1 |
C1' |
C2' |
H1' |
241.2 |
237.8 |
| C2' |
C1' |
N1 |
C2 |
105.7 |
296.5 |
| C2' |
C1' |
N1 |
C6 |
285.6 |
116.5 |
| F |
C2' |
C3' |
H3' |
355.9 |
0.1 |
| C3' |
C2' |
F |
C1' |
243.8 |
245.4 |
| C3' |
C2' |
F |
H2' |
122.1 |
122.6 |
| C1' |
C2' |
F |
H2' |
238.3 |
237.2 |
| F |
C2' |
C1' |
N1 |
18.3 |
24.1 |
| F |
C2' |
C1' |
H1' |
137.1 |
146.3 |
| H2' |
C2' |
C3' |
H3' |
114.5 |
122.7 |
| C3' |
C2' |
H2' |
C1' |
117.7 |
114.6 |
| C3' |
C2' |
H2' |
F |
239.1 |
237.4 |
| C1' |
C2' |
H2' |
F |
121.4 |
122.7 |
| H2' |
C2' |
C1' |
N1 |
259.6 |
261.4 |
| H2' |
C2' |
C1' |
H1' |
18.4 |
23.6 |
| O4' |
C1' |
N1 |
C2' |
118.2 |
115.5 |
| O4' |
C1' |
N1 |
H1' |
238.4 |
237.8 |
| N1 |
C1' |
C2' |
F |
18.3 |
24.1 |
| N1 |
C1' |
C2' |
H2' |
259.6 |
261.4 |
| C2' |
C1' |
N1 |
H1' |
120.2 |
122.3 |
| C2 |
N1 |
C1' |
C6 |
180.1 |
180.0 |
| C1' |
N1 |
C2 |
O2 |
359.9 |
360.0 |
| C1' |
N1 |
C2 |
N3 |
179.8 |
180.0 |
| C1' |
N1 |
C6 |
C5 |
180.0 |
179.7 |
| C1' |
N1 |
C6 |
H6 |
360.0 |
0.0 |
| O4' |
C1' |
H1' |
C2' |
241.5 |
244.5 |
| O4' |
C1' |
H1' |
N1 |
120.0 |
122.2 |
| H1' |
C1' |
C2' |
F |
137.1 |
146.3 |
| H1' |
C1' |
C2' |
H2' |
18.4 |
23.6 |
| C2' |
C1' |
H1' |
N1 |
238.6 |
237.7 |
| H1' |
C1' |
N1 |
C2 |
345.5 |
174.3 |
| H1' |
C1' |
N1 |
C6 |
165.4 |
354.3 |
| C2 |
N1 |
C1' |
H1' |
345.5 |
174.3 |
| C1' |
N1 |
C2 |
C6 |
179.9 |
180.0 |
| C2 |
N1 |
C6 |
C5 |
359.9 |
359.7 |
| C2 |
N1 |
C6 |
H6 |
179.9 |
180.0 |
| O2 |
C2 |
N1 |
N3 |
180.2 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
0.1 |
0.0 |
| C6 |
N1 |
C1' |
H1' |
165.4 |
354.3 |
| C1' |
N1 |
C6 |
C2 |
180.1 |
180.0 |
| C6 |
N1 |
C2 |
O2 |
180.1 |
180.0 |
| C6 |
N1 |
C2 |
N3 |
359.9 |
0.0 |
| C4 |
C5 |
C6 |
N1 |
0.3 |
0.6 |
| N1 |
C6 |
C5 |
H5 |
180.3 |
180.0 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
179.7 |
| O2 |
C2 |
N1 |
C6 |
180.1 |
180.0 |
| N1 |
C2 |
O2 |
N3 |
179.8 |
180.0 |
| O2 |
C2 |
N3 |
C4 |
180.0 |
180.0 |
| N3 |
C2 |
N1 |
C6 |
359.9 |
0.0 |
| N1 |
C2 |
N3 |
O2 |
180.2 |
180.0 |
| C2 |
N3 |
C4 |
N4 |
180.5 |
179.9 |
| C2 |
N3 |
C4 |
C5 |
0.0 |
0.3 |
| N4 |
C4 |
N3 |
C5 |
180.4 |
179.6 |
| N3 |
C4 |
N4 |
HN41 |
359.5 |
0.1 |
| N3 |
C4 |
N4 |
HN42 |
179.6 |
179.7 |
| N3 |
C4 |
C5 |
C6 |
359.8 |
359.4 |
| N3 |
C4 |
C5 |
H5 |
179.7 |
180.0 |
| N3 |
C4 |
N4 |
C5 |
179.6 |
180.4 |
| N4 |
C4 |
C5 |
C6 |
179.3 |
179.7 |
| N4 |
C4 |
C5 |
H5 |
359.3 |
0.4 |
| HN41 |
N4 |
C4 |
HN42 |
180.0 |
180.3 |
| N1 |
C6 |
C5 |
C4 |
0.3 |
0.6 |
| N3 |
C4 |
C5 |
N4 |
180.4 |
179.6 |
| C5 |
C4 |
N4 |
HN41 |
180.0 |
179.7 |
| C5 |
C4 |
N4 |
HN42 |
0.0 |
359.4 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.4 |
| C4 |
C5 |
C6 |
H6 |
180.3 |
180.3 |
| HN41 |
N4 |
C4 |
C5 |
180.0 |
179.7 |
| C4 |
N4 |
HN41 |
HN42 |
180.0 |
179.7 |
| HN42 |
N4 |
C4 |
C5 |
0.0 |
359.4 |
| C4 |
N4 |
HN42 |
HN41 |
179.9 |
180.3 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.3 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.6 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
179.3 |
| H5 |
C5 |
C6 |
H6 |
0.3 |
359.6 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
179.7 |
| H6 |
C6 |
C5 |
H5 |
0.3 |
359.6 |