PDB Chemical Component CFF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CFF
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C2 |
1.539 |
1.343 |
N1 |
C10 |
1.512 |
1.465 |
N1 |
C6 |
1.422 |
1.349 |
C2 |
N3 |
1.342 |
1.346 |
C2 |
O11 |
1.201 |
1.216 |
C10 |
H101 |
1.114 |
1.090 |
C10 |
H102 |
1.116 |
1.090 |
C10 |
H103 |
1.116 |
1.089 |
C6 |
C5 |
1.455 |
1.412 |
C6 |
O13 |
1.285 |
1.218 |
N3 |
C12 |
1.486 |
1.465 |
N3 |
C4 |
1.420 |
1.384 |
C12 |
H121 |
1.116 |
1.091 |
C12 |
H122 |
1.115 |
1.090 |
C12 |
H123 |
1.115 |
1.089 |
C4 |
C5 |
1.369 |
1.388 |
C4 |
N9 |
1.315 |
1.336 |
C5 |
N7 |
1.398 |
1.381 |
N9 |
C8 |
1.344 |
1.308 |
N7 |
C8 |
1.345 |
1.347 |
N7 |
C14 |
1.493 |
1.465 |
C8 |
H81 |
1.103 |
1.080 |
C14 |
H141 |
1.115 |
1.090 |
C14 |
H142 |
1.115 |
1.089 |
C14 |
H143 |
1.115 |
1.090 |
Bond Angles for CFF
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C10 |
115.4 |
119.5 |
C2 |
N1 |
C6 |
124.0 |
121.0 |
N1 |
C2 |
N3 |
112.7 |
121.7 |
N1 |
C2 |
O11 |
118.4 |
119.2 |
C10 |
N1 |
C6 |
120.6 |
119.4 |
N1 |
C10 |
H101 |
115.4 |
109.4 |
N1 |
C10 |
H102 |
110.0 |
109.5 |
N1 |
C10 |
H103 |
110.0 |
109.5 |
N1 |
C6 |
C5 |
115.8 |
119.2 |
N1 |
C6 |
O13 |
120.6 |
120.4 |
N3 |
C2 |
O11 |
128.9 |
119.2 |
C2 |
N3 |
C12 |
118.3 |
120.0 |
C2 |
N3 |
C4 |
125.3 |
120.1 |
H101 |
C10 |
H102 |
110.1 |
109.4 |
H101 |
C10 |
H103 |
110.1 |
109.5 |
H102 |
C10 |
H103 |
100.2 |
109.5 |
C5 |
C6 |
O13 |
123.5 |
120.4 |
C6 |
C5 |
C4 |
120.3 |
119.1 |
C6 |
C5 |
N7 |
133.2 |
134.5 |
C12 |
N3 |
C4 |
116.4 |
119.9 |
N3 |
C12 |
H121 |
118.4 |
109.5 |
N3 |
C12 |
H122 |
109.0 |
109.5 |
N3 |
C12 |
H123 |
109.1 |
109.5 |
N3 |
C4 |
C5 |
121.7 |
118.9 |
N3 |
C4 |
N9 |
126.2 |
133.9 |
H121 |
C12 |
H122 |
109.0 |
109.5 |
H121 |
C12 |
H123 |
109.0 |
109.5 |
H122 |
C12 |
H123 |
101.0 |
109.4 |
C5 |
C4 |
N9 |
112.0 |
107.2 |
C4 |
C5 |
N7 |
106.4 |
106.3 |
C4 |
N9 |
C8 |
103.9 |
109.8 |
C5 |
N7 |
C8 |
103.3 |
106.9 |
C5 |
N7 |
C14 |
127.6 |
126.5 |
N9 |
C8 |
N7 |
114.4 |
109.7 |
N9 |
C8 |
H81 |
122.7 |
125.2 |
C8 |
N7 |
C14 |
129.1 |
126.5 |
N7 |
C8 |
H81 |
122.9 |
125.1 |
N7 |
C14 |
H141 |
127.6 |
109.5 |
N7 |
C14 |
H142 |
105.8 |
109.5 |
N7 |
C14 |
H143 |
105.8 |
109.4 |
H141 |
C14 |
H142 |
105.9 |
109.5 |
H141 |
C14 |
H143 |
105.9 |
109.4 |
H142 |
C14 |
H143 |
103.6 |
109.5 |
Torsion Angles for CFF
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C10 |
N1 |
C2 |
C6 |
178.4 |
180.0 |
C2 |
N1 |
C10 |
H101 |
180.0 |
0.1 |
C2 |
N1 |
C10 |
H102 |
305.3 |
120.0 |
C2 |
N1 |
C10 |
H103 |
54.7 |
240.0 |
C2 |
N1 |
C6 |
C5 |
357.1 |
359.7 |
C2 |
N1 |
C6 |
O13 |
180.3 |
180.1 |
N3 |
C2 |
N1 |
O11 |
180.4 |
180.0 |
N1 |
C2 |
N3 |
C12 |
180.1 |
180.0 |
N1 |
C2 |
N3 |
C4 |
359.3 |
360.0 |
C2 |
N1 |
C10 |
C6 |
181.5 |
180.0 |
C10 |
N1 |
C2 |
N3 |
179.9 |
180.0 |
C10 |
N1 |
C2 |
O11 |
359.5 |
360.0 |
C10 |
N1 |
C6 |
C5 |
178.8 |
179.7 |
C10 |
N1 |
C6 |
O13 |
2.0 |
0.1 |
H101 |
C10 |
N1 |
H102 |
234.7 |
240.1 |
H101 |
C10 |
N1 |
H103 |
125.3 |
120.0 |
H102 |
C10 |
N1 |
H103 |
250.6 |
239.9 |
C2 |
N1 |
C6 |
C10 |
178.3 |
180.0 |
C6 |
N1 |
C2 |
N3 |
1.5 |
0.0 |
C6 |
N1 |
C2 |
O11 |
181.1 |
180.0 |
C6 |
N1 |
C10 |
H101 |
358.4 |
180.0 |
C6 |
N1 |
C10 |
H102 |
123.7 |
299.9 |
C6 |
N1 |
C10 |
H103 |
233.2 |
60.0 |
C5 |
C6 |
N1 |
O13 |
176.8 |
179.6 |
N1 |
C6 |
C5 |
C4 |
3.6 |
0.6 |
N1 |
C6 |
C5 |
N7 |
179.1 |
179.7 |
N3 |
C2 |
N1 |
C10 |
179.9 |
180.0 |
N3 |
C2 |
N1 |
C6 |
1.5 |
0.0 |
N1 |
C2 |
N3 |
O11 |
179.5 |
180.0 |
C12 |
N3 |
C2 |
C4 |
180.8 |
180.0 |
C2 |
N3 |
C12 |
H121 |
180.0 |
-0.0 |
C2 |
N3 |
C12 |
H122 |
305.2 |
120.0 |
C2 |
N3 |
C12 |
H123 |
54.7 |
240.0 |
C2 |
N3 |
C4 |
C5 |
1.6 |
0.2 |
C2 |
N3 |
C4 |
N9 |
179.5 |
180.0 |
O11 |
C2 |
N1 |
C10 |
359.5 |
360.0 |
O11 |
C2 |
N1 |
C6 |
181.1 |
180.0 |
N1 |
C2 |
O11 |
N3 |
180.5 |
180.0 |
O11 |
C2 |
N3 |
C12 |
0.6 |
-0.0 |
O11 |
C2 |
N3 |
C4 |
179.8 |
180.0 |
H101 |
C10 |
N1 |
C6 |
358.4 |
180.0 |
N1 |
C10 |
H101 |
H102 |
125.3 |
119.9 |
N1 |
C10 |
H101 |
H103 |
234.8 |
240.0 |
H102 |
C10 |
H101 |
H103 |
109.5 |
120.0 |
H102 |
C10 |
N1 |
C6 |
123.7 |
299.9 |
N1 |
C10 |
H102 |
H101 |
231.7 |
240.1 |
N1 |
C10 |
H102 |
H103 |
115.8 |
120.1 |
H101 |
C10 |
H102 |
H103 |
244.1 |
240.0 |
H103 |
C10 |
N1 |
C6 |
233.2 |
60.0 |
N1 |
C10 |
H103 |
H101 |
128.3 |
120.0 |
N1 |
C10 |
H103 |
H102 |
244.2 |
240.0 |
H101 |
C10 |
H103 |
H102 |
115.9 |
120.0 |
N1 |
C6 |
C5 |
O13 |
183.3 |
180.4 |
N3 |
C4 |
C5 |
C6 |
357.0 |
359.5 |
C6 |
C5 |
C4 |
N9 |
178.8 |
179.7 |
C4 |
C5 |
C6 |
N7 |
184.5 |
180.9 |
C6 |
C5 |
N7 |
C8 |
182.0 |
180.5 |
C6 |
C5 |
N7 |
C14 |
4.2 |
0.7 |
N1 |
C6 |
O13 |
C5 |
176.5 |
179.6 |
O13 |
C6 |
C5 |
C4 |
180.3 |
180.2 |
O13 |
C6 |
C5 |
N7 |
355.7 |
359.3 |
C12 |
N3 |
C2 |
O11 |
0.6 |
-0.0 |
C2 |
N3 |
C12 |
C4 |
179.3 |
180.0 |
C12 |
N3 |
C4 |
C5 |
180.8 |
180.2 |
C12 |
N3 |
C4 |
N9 |
358.7 |
-0.0 |
H121 |
C12 |
N3 |
H122 |
234.8 |
240.0 |
H121 |
C12 |
N3 |
H123 |
125.3 |
120.0 |
H122 |
C12 |
N3 |
H123 |
250.5 |
240.0 |
C4 |
N3 |
C2 |
O11 |
179.8 |
180.0 |
C2 |
N3 |
C4 |
C12 |
180.8 |
180.0 |
C6 |
C5 |
C4 |
N3 |
357.0 |
359.5 |
C4 |
N3 |
C12 |
H121 |
0.7 |
180.0 |
C4 |
N3 |
C12 |
H122 |
126.0 |
300.0 |
C4 |
N3 |
C12 |
H123 |
235.5 |
60.0 |
C5 |
C4 |
N3 |
N9 |
182.1 |
180.2 |
N3 |
C4 |
C5 |
N7 |
180.4 |
180.2 |
N3 |
C4 |
N9 |
C8 |
180.6 |
180.0 |
H121 |
C12 |
N3 |
C4 |
0.7 |
180.0 |
N3 |
C12 |
H121 |
H122 |
125.3 |
120.0 |
N3 |
C12 |
H121 |
H123 |
234.7 |
240.0 |
H122 |
C12 |
H121 |
H123 |
109.4 |
119.9 |
H122 |
C12 |
N3 |
C4 |
126.0 |
300.0 |
N3 |
C12 |
H122 |
H121 |
229.5 |
240.0 |
N3 |
C12 |
H122 |
H123 |
114.8 |
120.0 |
H121 |
C12 |
H122 |
H123 |
245.4 |
240.0 |
H123 |
C12 |
N3 |
C4 |
235.5 |
60.0 |
N3 |
C12 |
H123 |
H121 |
130.6 |
120.0 |
N3 |
C12 |
H123 |
H122 |
245.2 |
240.0 |
H121 |
C12 |
H123 |
H122 |
114.7 |
120.0 |
C4 |
C5 |
C6 |
O13 |
180.3 |
180.2 |
C6 |
C5 |
C4 |
N7 |
176.6 |
179.3 |
N3 |
C4 |
C5 |
N9 |
178.2 |
179.8 |
C5 |
C4 |
N9 |
C8 |
358.6 |
359.8 |
C4 |
C5 |
N7 |
C8 |
358.0 |
359.7 |
C4 |
C5 |
N7 |
C14 |
180.1 |
179.9 |
N3 |
C4 |
N9 |
C5 |
181.9 |
180.2 |
N9 |
C4 |
C5 |
N7 |
2.2 |
0.3 |
C4 |
N9 |
C8 |
N7 |
360.0 |
-0.0 |
C4 |
N9 |
C8 |
H81 |
179.9 |
180.0 |
N7 |
C5 |
C6 |
O13 |
355.7 |
359.3 |
C6 |
C5 |
N7 |
C4 |
184.1 |
180.8 |
N7 |
C5 |
C4 |
N9 |
2.2 |
0.3 |
N9 |
C8 |
N7 |
C5 |
1.3 |
0.2 |
C8 |
N7 |
C5 |
C14 |
177.8 |
179.8 |
C5 |
N7 |
C8 |
H81 |
181.4 |
180.2 |
C5 |
N7 |
C14 |
H141 |
180.0 |
269.7 |
C5 |
N7 |
C14 |
H142 |
305.3 |
29.7 |
C5 |
N7 |
C14 |
H143 |
54.7 |
149.8 |
C5 |
N7 |
C8 |
N9 |
1.3 |
0.2 |
N9 |
C8 |
N7 |
C14 |
179.1 |
180.0 |
N7 |
C8 |
N9 |
H81 |
180.0 |
180.0 |
C5 |
N7 |
C8 |
C14 |
182.2 |
180.2 |
N9 |
C8 |
N7 |
H81 |
180.0 |
180.0 |
C8 |
N7 |
C14 |
H141 |
2.7 |
90.0 |
C8 |
N7 |
C14 |
H142 |
128.0 |
210.0 |
C8 |
N7 |
C14 |
H143 |
237.4 |
330.1 |
C5 |
N7 |
C14 |
C8 |
177.3 |
179.7 |
C14 |
N7 |
C8 |
H81 |
359.1 |
360.0 |
H141 |
C14 |
N7 |
H142 |
234.7 |
240.0 |
H141 |
C14 |
N7 |
H143 |
125.3 |
119.9 |
H142 |
C14 |
N7 |
H143 |
250.5 |
239.9 |
N9 |
C8 |
H81 |
N7 |
180.0 |
180.0 |
H81 |
C8 |
N7 |
C14 |
359.1 |
360.0 |
N7 |
C14 |
H141 |
H142 |
125.2 |
120.0 |
N7 |
C14 |
H141 |
H143 |
234.8 |
240.1 |
H142 |
C14 |
H141 |
H143 |
109.5 |
120.1 |
N7 |
C14 |
H142 |
H141 |
222.3 |
240.0 |
N7 |
C14 |
H142 |
H143 |
111.1 |
120.0 |
H141 |
C14 |
H142 |
H143 |
248.8 |
240.0 |
N7 |
C14 |
H143 |
H141 |
137.7 |
120.0 |
N7 |
C14 |
H143 |
H142 |
248.9 |
240.0 |
H141 |
C14 |
H143 |
H142 |
111.2 |
120.0 |