PDB Chemical Component CFA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CFA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.514 |
1.507 |
| C1 |
O1 |
1.250 |
1.342 |
| C1 |
O2 |
1.241 |
1.208 |
| C2 |
O1' |
1.436 |
1.428 |
| C2 |
H2C1 |
1.115 |
1.090 |
| C2 |
H2C2 |
1.115 |
1.090 |
| C1' |
C2' |
1.395 |
1.387 |
| C1' |
C6' |
1.385 |
1.385 |
| C1' |
O1' |
1.358 |
1.360 |
| C2' |
C3' |
1.366 |
1.382 |
| C2' |
CL3 |
1.734 |
1.735 |
| C3' |
C4' |
1.371 |
1.383 |
| C3' |
H3' |
1.103 |
1.080 |
| C4' |
C5' |
1.370 |
1.385 |
| C4' |
CL4 |
1.735 |
1.736 |
| C5' |
C6' |
1.370 |
1.381 |
| C5' |
H5' |
1.103 |
1.080 |
| C6' |
H6' |
1.103 |
1.080 |
| O1 |
H1 |
0.949 |
0.967 |
Bond Angles for CFA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
O1 |
112.7 |
120.0 |
| C2 |
C1 |
O2 |
120.6 |
120.0 |
| C1 |
C2 |
O1' |
112.5 |
109.5 |
| C1 |
C2 |
H2C1 |
111.1 |
109.5 |
| C1 |
C2 |
H2C2 |
111.1 |
109.5 |
| O1 |
C1 |
O2 |
126.7 |
120.0 |
| C1 |
O1 |
H1 |
112.7 |
120.0 |
| O1' |
C2 |
H2C1 |
111.1 |
109.5 |
| O1' |
C2 |
H2C2 |
111.1 |
109.4 |
| C2 |
O1' |
C1' |
115.4 |
106.8 |
| H2C1 |
C2 |
H2C2 |
99.3 |
109.5 |
| C2' |
C1' |
C6' |
117.0 |
120.0 |
| C2' |
C1' |
O1' |
117.6 |
120.0 |
| C1' |
C2' |
C3' |
121.9 |
119.9 |
| C1' |
C2' |
CL3 |
118.8 |
120.1 |
| C6' |
C1' |
O1' |
125.4 |
120.0 |
| C1' |
C6' |
C5' |
121.2 |
120.0 |
| C1' |
C6' |
H6' |
119.4 |
120.1 |
| C3' |
C2' |
CL3 |
119.3 |
120.0 |
| C2' |
C3' |
C4' |
119.6 |
120.1 |
| C2' |
C3' |
H3' |
120.2 |
120.0 |
| C4' |
C3' |
H3' |
120.2 |
119.9 |
| C3' |
C4' |
C5' |
119.9 |
120.1 |
| C3' |
C4' |
CL4 |
120.1 |
120.0 |
| C5' |
C4' |
CL4 |
120.0 |
119.9 |
| C4' |
C5' |
C6' |
120.4 |
120.0 |
| C4' |
C5' |
H5' |
119.8 |
120.0 |
| C6' |
C5' |
H5' |
119.8 |
120.0 |
| C5' |
C6' |
H6' |
119.4 |
120.0 |
Torsion Angles for CFA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C1 |
C2 |
O2 |
178.7 |
180.0 |
| C2 |
C1 |
O1 |
H1 |
180.0 |
180.0 |
| O1' |
C2 |
C1 |
H2C1 |
125.3 |
240.0 |
| O1' |
C2 |
C1 |
H2C2 |
234.7 |
120.0 |
| C1 |
C2 |
O1' |
C1' |
172.1 |
180.0 |
| H2C1 |
C2 |
C1 |
H2C2 |
109.5 |
240.0 |
| C2 |
C1 |
O1 |
O2 |
181.4 |
180.0 |
| O1 |
C1 |
C2 |
O1' |
63.2 |
180.0 |
| O1 |
C1 |
C2 |
H2C1 |
297.9 |
300.0 |
| O1 |
C1 |
C2 |
H2C2 |
188.4 |
60.0 |
| C2 |
C1 |
O2 |
O1 |
178.5 |
180.0 |
| O2 |
C1 |
C2 |
O1' |
244.4 |
360.0 |
| O2 |
C1 |
C2 |
H2C1 |
119.2 |
120.0 |
| O2 |
C1 |
C2 |
H2C2 |
9.7 |
240.0 |
| O2 |
C1 |
O1 |
H1 |
358.6 |
0.0 |
| O1' |
C2 |
C1 |
O1 |
63.2 |
180.0 |
| O1' |
C2 |
C1 |
O2 |
244.4 |
360.0 |
| C1 |
C2 |
O1' |
H2C1 |
234.8 |
120.0 |
| C1 |
C2 |
O1' |
H2C2 |
125.3 |
240.0 |
| H2C1 |
C2 |
O1' |
H2C2 |
250.5 |
120.0 |
| C2' |
C1' |
O1' |
C2 |
189.2 |
179.8 |
| C6' |
C1' |
O1' |
C2 |
9.4 |
0.0 |
| H2C1 |
C2 |
C1 |
O1 |
297.9 |
300.0 |
| H2C1 |
C2 |
C1 |
O2 |
119.2 |
120.0 |
| C1 |
C2 |
H2C1 |
O1' |
126.0 |
239.9 |
| C1 |
C2 |
H2C1 |
H2C2 |
243.0 |
120.0 |
| O1' |
C2 |
H2C1 |
H2C2 |
117.0 |
240.0 |
| H2C1 |
C2 |
O1' |
C1' |
297.4 |
60.0 |
| H2C2 |
C2 |
C1 |
O1 |
188.4 |
60.0 |
| H2C2 |
C2 |
C1 |
O2 |
9.7 |
240.0 |
| C1 |
C2 |
H2C2 |
O1' |
234.0 |
120.0 |
| C1 |
C2 |
H2C2 |
H2C1 |
117.0 |
240.0 |
| O1' |
C2 |
H2C2 |
H2C1 |
243.0 |
120.0 |
| H2C2 |
C2 |
O1' |
C1' |
46.9 |
300.0 |
| C2 |
O1' |
C1' |
C2' |
189.2 |
179.8 |
| C6' |
C1' |
C2' |
O1' |
179.8 |
179.8 |
| C2' |
C1' |
C6' |
C5' |
1.3 |
0.1 |
| C2' |
C1' |
C6' |
H6' |
181.3 |
180.2 |
| C3' |
C2' |
C1' |
CL3 |
179.8 |
179.6 |
| C1' |
C2' |
C3' |
C4' |
359.9 |
0.4 |
| C1' |
C2' |
C3' |
H3' |
179.8 |
180.2 |
| C2 |
O1' |
C1' |
C6' |
9.4 |
0.0 |
| C2' |
C1' |
C6' |
O1' |
180.2 |
180.2 |
| C6' |
C1' |
C2' |
C3' |
359.0 |
359.6 |
| C6' |
C1' |
C2' |
CL3 |
179.2 |
180.0 |
| C4' |
C5' |
C6' |
C1' |
359.5 |
0.0 |
| C1' |
C6' |
C5' |
H5' |
179.5 |
180.0 |
| C5' |
C6' |
C1' |
H6' |
180.0 |
179.9 |
| C1' |
O1' |
C2 |
H2C1 |
297.4 |
60.0 |
| C1' |
O1' |
C2 |
H2C2 |
46.9 |
300.0 |
| C2' |
C1' |
O1' |
C6' |
179.8 |
179.8 |
| O1' |
C1' |
C2' |
C3' |
179.2 |
179.8 |
| O1' |
C1' |
C2' |
CL3 |
359.4 |
0.2 |
| O1' |
C1' |
C6' |
C5' |
181.1 |
180.0 |
| O1' |
C1' |
C6' |
H6' |
1.1 |
0.0 |
| C3' |
C2' |
C1' |
C6' |
359.0 |
359.6 |
| C3' |
C2' |
C1' |
O1' |
179.2 |
179.8 |
| C1' |
C2' |
C3' |
CL3 |
180.2 |
180.4 |
| C4' |
C3' |
C2' |
H3' |
180.0 |
180.2 |
| C2' |
C3' |
C4' |
C5' |
1.0 |
359.8 |
| C2' |
C3' |
C4' |
CL4 |
181.8 |
179.8 |
| CL3 |
C2' |
C1' |
C6' |
179.2 |
180.0 |
| CL3 |
C2' |
C1' |
O1' |
359.4 |
0.2 |
| C1' |
C2' |
CL3 |
C3' |
179.9 |
179.6 |
| CL3 |
C2' |
C3' |
C4' |
179.7 |
180.0 |
| CL3 |
C2' |
C3' |
H3' |
359.7 |
359.8 |
| C4' |
C3' |
C2' |
CL3 |
179.7 |
180.0 |
| C2' |
C3' |
C4' |
H3' |
180.0 |
179.8 |
| C5' |
C4' |
C3' |
CL4 |
179.1 |
180.0 |
| C3' |
C4' |
C5' |
C6' |
359.4 |
360.0 |
| C3' |
C4' |
C5' |
H5' |
179.3 |
180.0 |
| H3' |
C3' |
C2' |
CL3 |
359.7 |
359.8 |
| C2' |
C3' |
H3' |
C4' |
180.0 |
180.2 |
| H3' |
C3' |
C4' |
C5' |
181.0 |
180.0 |
| H3' |
C3' |
C4' |
CL4 |
1.8 |
0.0 |
| C1' |
C6' |
C5' |
C4' |
359.5 |
0.0 |
| C5' |
C4' |
C3' |
H3' |
181.0 |
180.0 |
| C3' |
C4' |
C5' |
CL4 |
180.9 |
180.0 |
| C6' |
C5' |
C4' |
H5' |
180.0 |
180.0 |
| C4' |
C5' |
C6' |
H6' |
179.5 |
180.0 |
| CL4 |
C4' |
C3' |
H3' |
1.8 |
0.0 |
| C3' |
C4' |
CL4 |
C5' |
179.1 |
180.0 |
| CL4 |
C4' |
C5' |
C6' |
178.5 |
180.0 |
| CL4 |
C4' |
C5' |
H5' |
358.5 |
360.0 |
| C5' |
C6' |
C1' |
O1' |
181.1 |
180.0 |
| C1' |
C6' |
C5' |
H6' |
180.0 |
180.1 |
| C6' |
C5' |
C4' |
CL4 |
178.5 |
180.0 |
| C4' |
C5' |
C6' |
H5' |
180.0 |
180.0 |
| H5' |
C5' |
C4' |
CL4 |
358.5 |
360.0 |
| C4' |
C5' |
H5' |
C6' |
180.0 |
180.0 |
| H5' |
C5' |
C6' |
H6' |
359.5 |
360.0 |
| H6' |
C6' |
C1' |
O1' |
1.1 |
0.0 |
| C1' |
C6' |
H6' |
C5' |
180.0 |
179.9 |
| H6' |
C6' |
C5' |
H5' |
359.5 |
360.0 |
| H1 |
O1 |
C1 |
O2 |
358.6 |
0.0 |