PDB Chemical Component CES
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CES
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C14 |
O15 |
1.430 |
|
C14 |
C19 |
1.387 |
|
C14 |
C13 |
1.500 |
|
O15 |
C16 |
1.380 |
|
C16 |
C17 |
1.387 |
|
C16 |
H16 |
1.103 |
|
C17 |
C19 |
1.327 |
|
C17 |
H17 |
1.104 |
|
C19 |
H19 |
1.103 |
|
C18 |
O17 |
1.423 |
|
C18 |
H183 |
1.114 |
|
C18 |
H182 |
1.115 |
|
C18 |
H181 |
1.114 |
|
O17 |
N16 |
1.436 |
|
N16 |
C13 |
1.354 |
|
C13 |
C11 |
1.459 |
|
C4' |
O4A |
1.250 |
|
C4' |
O4B |
1.256 |
|
C4' |
C4 |
1.590 |
|
O4A |
H4O |
0.951 |
|
O9 |
C8 |
1.230 |
|
C8 |
C7 |
1.520 |
|
C8 |
O9A |
1.411 |
|
C3' |
C3 |
1.351 |
|
C3' |
H3'3 |
1.115 |
|
C3' |
H3'2 |
1.115 |
|
C3' |
H3'1 |
1.115 |
|
C3 |
C2 |
1.410 |
|
C3 |
C4 |
1.498 |
|
C2 |
S1 |
1.774 |
|
C2 |
H21 |
1.115 |
|
C2 |
H22 |
1.115 |
|
S1 |
C6 |
1.793 |
|
C6 |
N5 |
1.510 |
|
C6 |
C7 |
1.613 |
|
C6 |
H6 |
1.115 |
|
N5 |
C4 |
1.379 |
|
N5 |
HN5 |
1.020 |
|
C7 |
N10 |
1.509 |
|
C7 |
H7 |
1.116 |
|
N10 |
C11 |
1.358 |
|
N10 |
H10 |
1.019 |
|
C11 |
O12 |
1.242 |
|
O9A |
HO9 |
0.951 |
|
Bond Angles for CES
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O15 |
C14 |
C19 |
105.5 |
|
O15 |
C14 |
C13 |
124.6 |
|
C14 |
O15 |
C16 |
99.3 |
|
C19 |
C14 |
C13 |
129.9 |
|
C14 |
C19 |
C17 |
118.0 |
|
C14 |
C19 |
H19 |
123.1 |
|
C14 |
C13 |
N16 |
109.6 |
|
C14 |
C13 |
C11 |
122.9 |
|
O15 |
C16 |
C17 |
120.6 |
|
O15 |
C16 |
H16 |
119.5 |
|
C17 |
C16 |
H16 |
119.9 |
|
C16 |
C17 |
C19 |
96.5 |
|
C16 |
C17 |
H17 |
133.2 |
|
C19 |
C17 |
H17 |
130.3 |
|
C17 |
C19 |
H19 |
118.9 |
|
O17 |
C18 |
H183 |
105.9 |
|
O17 |
C18 |
H182 |
113.5 |
|
O17 |
C18 |
H181 |
113.5 |
|
C18 |
O17 |
N16 |
105.9 |
|
H183 |
C18 |
H182 |
113.6 |
|
H183 |
C18 |
H181 |
113.6 |
|
H182 |
C18 |
H181 |
97.0 |
|
O17 |
N16 |
C13 |
116.5 |
|
N16 |
C13 |
C11 |
127.5 |
|
C13 |
C11 |
N10 |
115.5 |
|
C13 |
C11 |
O12 |
123.7 |
|
O4A |
C4' |
O4B |
123.0 |
|
O4A |
C4' |
C4 |
118.0 |
|
C4' |
O4A |
H4O |
123.0 |
|
O4B |
C4' |
C4 |
119.1 |
|
C4' |
C4 |
C3 |
125.3 |
|
C4' |
C4 |
N5 |
117.6 |
|
O9 |
C8 |
C7 |
121.3 |
|
O9 |
C8 |
O9A |
122.1 |
|
C7 |
C8 |
O9A |
111.4 |
|
C8 |
C7 |
C6 |
108.2 |
|
C8 |
C7 |
N10 |
113.0 |
|
C8 |
C7 |
H7 |
109.2 |
|
C8 |
O9A |
HO9 |
122.1 |
|
C3 |
C3' |
H3'3 |
120.9 |
|
C3 |
C3' |
H3'2 |
108.1 |
|
C3 |
C3' |
H3'1 |
108.1 |
|
C3' |
C3 |
C2 |
120.9 |
|
C3' |
C3 |
C4 |
120.1 |
|
H3'3 |
C3' |
H3'2 |
108.2 |
|
H3'3 |
C3' |
H3'1 |
108.2 |
|
H3'2 |
C3' |
H3'1 |
101.8 |
|
C2 |
C3 |
C4 |
119.0 |
|
C3 |
C2 |
S1 |
119.1 |
|
C3 |
C2 |
H21 |
108.8 |
|
C3 |
C2 |
H22 |
108.8 |
|
C3 |
C4 |
N5 |
117.1 |
|
S1 |
C2 |
H21 |
108.8 |
|
S1 |
C2 |
H22 |
108.7 |
|
C2 |
S1 |
C6 |
96.2 |
|
H21 |
C2 |
H22 |
101.3 |
|
S1 |
C6 |
N5 |
114.9 |
|
S1 |
C6 |
C7 |
110.2 |
|
S1 |
C6 |
H6 |
106.1 |
|
N5 |
C6 |
C7 |
112.1 |
|
N5 |
C6 |
H6 |
103.8 |
|
C6 |
N5 |
C4 |
128.2 |
|
C6 |
N5 |
HN5 |
105.7 |
|
C7 |
C6 |
H6 |
109.2 |
|
C6 |
C7 |
N10 |
112.7 |
|
C6 |
C7 |
H7 |
109.5 |
|
C4 |
N5 |
HN5 |
105.6 |
|
N10 |
C7 |
H7 |
104.3 |
|
C7 |
N10 |
C11 |
120.7 |
|
C7 |
N10 |
H10 |
124.9 |
|
C11 |
N10 |
H10 |
114.4 |
|
N10 |
C11 |
O12 |
120.8 |
|
Torsion Angles for CES
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C19 |
C14 |
O15 |
C13 |
179.1 |
|
O15 |
C14 |
C19 |
C17 |
358.6 |
|
O15 |
C14 |
C19 |
H19 |
178.6 |
|
O15 |
C14 |
C13 |
N16 |
29.2 |
|
O15 |
C14 |
C13 |
C11 |
208.0 |
|
C14 |
O15 |
C16 |
C17 |
359.9 |
|
C14 |
O15 |
C16 |
H16 |
180.0 |
|
O15 |
C14 |
C19 |
C13 |
180.9 |
|
C19 |
C14 |
O15 |
C16 |
0.8 |
|
C19 |
C14 |
C13 |
N16 |
210.3 |
|
C19 |
C14 |
C13 |
C11 |
29.1 |
|
C16 |
C17 |
C19 |
C14 |
1.3 |
|
C14 |
C19 |
C17 |
H17 |
181.2 |
|
C17 |
C19 |
C14 |
H19 |
180.0 |
|
O15 |
C14 |
C13 |
C19 |
178.9 |
|
C13 |
C14 |
O15 |
C16 |
181.6 |
|
C13 |
C14 |
C19 |
C17 |
177.6 |
|
C13 |
C14 |
C19 |
H19 |
357.6 |
|
O17 |
N16 |
C13 |
C14 |
191.8 |
|
N16 |
C13 |
C14 |
C11 |
181.3 |
|
C14 |
C13 |
C11 |
N10 |
182.0 |
|
C14 |
C13 |
C11 |
O12 |
1.2 |
|
C16 |
O15 |
C14 |
C19 |
0.8 |
|
C16 |
O15 |
C14 |
C13 |
181.6 |
|
C17 |
C16 |
O15 |
H16 |
179.9 |
|
O15 |
C16 |
C17 |
C19 |
359.3 |
|
O15 |
C16 |
C17 |
H17 |
179.3 |
|
C14 |
C19 |
C17 |
C16 |
1.3 |
|
O15 |
C16 |
C17 |
H16 |
180.1 |
|
C19 |
C17 |
C16 |
H17 |
180.0 |
|
C16 |
C17 |
C19 |
H19 |
181.3 |
|
O15 |
C16 |
H16 |
C17 |
179.9 |
|
H16 |
C16 |
C17 |
C19 |
179.2 |
|
H16 |
C16 |
C17 |
H17 |
359.3 |
|
C17 |
C19 |
C14 |
C13 |
177.6 |
|
C14 |
C19 |
C17 |
H19 |
180.0 |
|
C19 |
C17 |
C16 |
H16 |
179.2 |
|
C16 |
C17 |
C19 |
H17 |
180.0 |
|
H17 |
C17 |
C16 |
H16 |
359.3 |
|
C16 |
C17 |
H17 |
C19 |
180.0 |
|
H17 |
C17 |
C19 |
H19 |
1.2 |
|
H19 |
C19 |
C14 |
C13 |
357.6 |
|
C14 |
C19 |
H19 |
C17 |
180.0 |
|
H19 |
C19 |
C17 |
H17 |
1.2 |
|
H183 |
C18 |
O17 |
H182 |
234.7 |
|
H183 |
C18 |
O17 |
H181 |
125.3 |
|
H182 |
C18 |
O17 |
H181 |
250.5 |
|
C18 |
O17 |
N16 |
C13 |
198.1 |
|
O17 |
C18 |
H183 |
H182 |
125.2 |
|
O17 |
C18 |
H183 |
H181 |
234.8 |
|
H183 |
C18 |
O17 |
N16 |
180.0 |
|
H182 |
C18 |
H183 |
H181 |
109.5 |
|
O17 |
C18 |
H182 |
H183 |
238.9 |
|
O17 |
C18 |
H182 |
H181 |
119.4 |
|
H182 |
C18 |
O17 |
N16 |
305.3 |
|
H183 |
C18 |
H182 |
H181 |
240.5 |
|
O17 |
C18 |
H181 |
H183 |
121.1 |
|
O17 |
C18 |
H181 |
H182 |
240.6 |
|
H181 |
C18 |
O17 |
N16 |
54.7 |
|
H183 |
C18 |
H181 |
H182 |
119.5 |
|
C14 |
C13 |
N16 |
O17 |
191.8 |
|
N16 |
O17 |
C18 |
H183 |
180.0 |
|
N16 |
O17 |
C18 |
H182 |
305.3 |
|
N16 |
O17 |
C18 |
H181 |
54.7 |
|
O17 |
N16 |
C13 |
C11 |
13.1 |
|
C14 |
C13 |
N16 |
C11 |
178.7 |
|
N16 |
C13 |
C11 |
N10 |
0.5 |
|
N16 |
C13 |
C11 |
O12 |
179.8 |
|
C14 |
C13 |
C11 |
N16 |
181.5 |
|
C7 |
N10 |
C11 |
C13 |
164.0 |
|
C13 |
C11 |
N10 |
H10 |
344.0 |
|
N10 |
C11 |
C13 |
O12 |
180.8 |
|
O4B |
C4' |
O4A |
C4 |
180.8 |
|
O4A |
C4' |
C4 |
C3 |
232.3 |
|
O4A |
C4' |
C4 |
N5 |
48.6 |
|
O4A |
C4' |
O4B |
C4 |
179.2 |
|
O4B |
C4' |
O4A |
H4O |
179.9 |
|
O4B |
C4' |
C4 |
C3 |
51.6 |
|
O4B |
C4' |
C4 |
N5 |
227.8 |
|
O4A |
C4' |
C4 |
O4B |
180.7 |
|
C4 |
C4' |
O4A |
H4O |
359.2 |
|
C3' |
C3 |
C4 |
C4' |
0.3 |
|
C2 |
C3 |
C4 |
C4' |
179.9 |
|
C3 |
C4 |
C4' |
N5 |
183.8 |
|
C6 |
N5 |
C4 |
C4' |
159.6 |
|
C4' |
C4 |
N5 |
HN5 |
284.9 |
|
H4O |
O4A |
C4' |
O4B |
179.9 |
|
H4O |
O4A |
C4' |
C4 |
359.2 |
|
C7 |
C8 |
O9 |
O9A |
207.9 |
|
O9 |
C8 |
C7 |
C6 |
79.2 |
|
O9 |
C8 |
C7 |
N10 |
313.8 |
|
O9 |
C8 |
C7 |
H7 |
198.2 |
|
O9 |
C8 |
O9A |
HO9 |
180.0 |
|
O9 |
C8 |
C7 |
O9A |
154.8 |
|
C7 |
C8 |
O9A |
HO9 |
334.5 |
|
S1 |
C6 |
C7 |
C8 |
232.3 |
|
N5 |
C6 |
C7 |
C8 |
1.6 |
|
C8 |
C7 |
C6 |
H6 |
116.1 |
|
C6 |
C7 |
C8 |
N10 |
125.4 |
|
C6 |
C7 |
C8 |
H7 |
241.0 |
|
N10 |
C7 |
C8 |
H7 |
115.5 |
|
C8 |
C7 |
N10 |
C11 |
303.0 |
|
C8 |
C7 |
N10 |
H10 |
123.0 |
|
O9 |
C8 |
O9A |
C7 |
205.4 |
|
O9A |
C8 |
C7 |
C6 |
284.4 |
|
O9A |
C8 |
C7 |
N10 |
159.0 |
|
O9A |
C8 |
C7 |
H7 |
43.4 |
|
C4' |
C4 |
C3 |
C3' |
0.3 |
|
H3'3 |
C3' |
C3 |
H3'2 |
234.8 |
|
H3'3 |
C3' |
C3 |
H3'1 |
125.3 |
|
H3'2 |
C3' |
C3 |
H3'1 |
250.5 |
|
C2 |
C3 |
C3' |
C4 |
180.4 |
|
C3' |
C3 |
C2 |
S1 |
220.1 |
|
C3' |
C3 |
C2 |
H21 |
345.4 |
|
C3' |
C3 |
C2 |
H22 |
94.8 |
|
C3' |
C3 |
C4 |
N5 |
184.1 |
|
C3 |
C3' |
H3'3 |
H3'2 |
125.2 |
|
C3 |
C3' |
H3'3 |
H3'1 |
234.7 |
|
H3'3 |
C3' |
C3 |
C2 |
180.0 |
|
H3'3 |
C3' |
C3 |
C4 |
359.6 |
|
H3'2 |
C3' |
H3'3 |
H3'1 |
109.5 |
|
C3 |
C3' |
H3'2 |
H3'3 |
227.5 |
|
C3 |
C3' |
H3'2 |
H3'1 |
113.7 |
|
H3'2 |
C3' |
C3 |
C2 |
305.3 |
|
H3'2 |
C3' |
C3 |
C4 |
124.9 |
|
H3'3 |
C3' |
H3'2 |
H3'1 |
246.2 |
|
C3 |
C3' |
H3'1 |
H3'3 |
132.5 |
|
C3 |
C3' |
H3'1 |
H3'2 |
246.3 |
|
H3'1 |
C3' |
C3 |
C2 |
54.7 |
|
H3'1 |
C3' |
C3 |
C4 |
234.4 |
|
H3'3 |
C3' |
H3'1 |
H3'2 |
113.8 |
|
C4' |
C4 |
C3 |
C2 |
179.9 |
|
C2 |
C3 |
C3' |
H3'3 |
180.0 |
|
C2 |
C3 |
C3' |
H3'2 |
305.3 |
|
C2 |
C3 |
C3' |
H3'1 |
54.7 |
|
C3' |
C3 |
C2 |
C4 |
179.6 |
|
C2 |
C3 |
C4 |
N5 |
3.7 |
|
S1 |
C2 |
C3 |
H21 |
234.7 |
|
S1 |
C2 |
C3 |
H22 |
125.2 |
|
C3 |
C2 |
S1 |
C6 |
304.3 |
|
H21 |
C2 |
C3 |
H22 |
250.5 |
|
C4' |
C4 |
C3 |
N5 |
176.2 |
|
C4 |
C3 |
C3' |
H3'3 |
359.6 |
|
C4 |
C3 |
C3' |
H3'2 |
124.9 |
|
C4 |
C3 |
C3' |
H3'1 |
234.4 |
|
C3' |
C3 |
C4 |
C2 |
180.4 |
|
C4 |
C3 |
C2 |
S1 |
40.5 |
|
C4 |
C3 |
C2 |
H21 |
165.8 |
|
C4 |
C3 |
C2 |
H22 |
275.2 |
|
C6 |
N5 |
C4 |
C3 |
336.2 |
|
C3 |
C4 |
N5 |
HN5 |
101.5 |
|
S1 |
C2 |
C3 |
C4 |
40.5 |
|
C3 |
C2 |
S1 |
H21 |
125.3 |
|
C3 |
C2 |
S1 |
H22 |
234.7 |
|
H21 |
C2 |
S1 |
H22 |
109.4 |
|
C2 |
S1 |
C6 |
N5 |
34.9 |
|
C2 |
S1 |
C6 |
C7 |
162.7 |
|
C2 |
S1 |
C6 |
H6 |
280.8 |
|
H21 |
C2 |
C3 |
C4 |
165.8 |
|
C3 |
C2 |
H21 |
S1 |
228.9 |
|
C3 |
C2 |
H21 |
H22 |
114.5 |
|
S1 |
C2 |
H21 |
H22 |
245.6 |
|
H21 |
C2 |
S1 |
C6 |
179.0 |
|
H22 |
C2 |
C3 |
C4 |
275.2 |
|
C3 |
C2 |
H22 |
S1 |
131.1 |
|
C3 |
C2 |
H22 |
H21 |
245.5 |
|
S1 |
C2 |
H22 |
H21 |
114.4 |
|
H22 |
C2 |
S1 |
C6 |
69.6 |
|
C8 |
C7 |
C6 |
S1 |
232.3 |
|
C6 |
S1 |
C2 |
H21 |
179.0 |
|
C6 |
S1 |
C2 |
H22 |
69.6 |
|
N5 |
C6 |
S1 |
C7 |
232.2 |
|
N5 |
C6 |
S1 |
H6 |
114.1 |
|
S1 |
C6 |
N5 |
C4 |
358.3 |
|
S1 |
C6 |
N5 |
HN5 |
233.0 |
|
C7 |
C6 |
S1 |
H6 |
241.9 |
|
S1 |
C6 |
C7 |
N10 |
357.9 |
|
S1 |
C6 |
C7 |
H7 |
113.4 |
|
C4' |
C4 |
N5 |
C6 |
159.6 |
|
C8 |
C7 |
C6 |
N5 |
1.6 |
|
C3 |
C4 |
N5 |
C6 |
336.2 |
|
S1 |
C6 |
N5 |
C7 |
126.8 |
|
S1 |
C6 |
N5 |
H6 |
244.6 |
|
C7 |
C6 |
N5 |
H6 |
117.7 |
|
N5 |
C6 |
C7 |
N10 |
127.2 |
|
N5 |
C6 |
C7 |
H7 |
242.8 |
|
C4 |
N5 |
C6 |
HN5 |
125.3 |
|
C6 |
C7 |
C8 |
O9A |
284.4 |
|
C8 |
C7 |
C6 |
N10 |
234.4 |
|
C8 |
C7 |
C6 |
H7 |
118.8 |
|
S1 |
C6 |
C7 |
N5 |
230.7 |
|
S1 |
C6 |
C7 |
H6 |
116.2 |
|
N5 |
C6 |
C7 |
H6 |
245.5 |
|
C7 |
C6 |
N5 |
C4 |
231.5 |
|
C7 |
C6 |
N5 |
HN5 |
106.2 |
|
N10 |
C7 |
C6 |
H7 |
244.4 |
|
C6 |
C7 |
N10 |
C11 |
180.0 |
|
C6 |
C7 |
N10 |
H10 |
0.0 |
|
S1 |
C6 |
H6 |
N5 |
121.5 |
|
S1 |
C6 |
H6 |
C7 |
241.3 |
|
N5 |
C6 |
H6 |
C7 |
119.8 |
|
H6 |
C6 |
N5 |
C4 |
113.7 |
|
H6 |
C6 |
N5 |
HN5 |
348.4 |
|
H6 |
C6 |
C7 |
N10 |
241.7 |
|
H6 |
C6 |
C7 |
H7 |
357.3 |
|
C4' |
C4 |
N5 |
C3 |
183.5 |
|
C4 |
N5 |
C6 |
C7 |
231.5 |
|
C4 |
N5 |
C6 |
H6 |
113.7 |
|
C6 |
N5 |
C4 |
HN5 |
234.7 |
|
HN5 |
N5 |
C6 |
C7 |
106.2 |
|
HN5 |
N5 |
C6 |
H6 |
348.4 |
|
C6 |
N5 |
HN5 |
C4 |
138.3 |
|
C13 |
C11 |
N10 |
C7 |
164.0 |
|
N10 |
C7 |
C8 |
O9A |
159.0 |
|
C8 |
C7 |
N10 |
C6 |
122.9 |
|
C8 |
C7 |
N10 |
H7 |
241.6 |
|
N10 |
C7 |
C6 |
H6 |
241.7 |
|
C6 |
C7 |
N10 |
H7 |
118.6 |
|
C11 |
N10 |
C7 |
H10 |
180.0 |
|
C7 |
N10 |
C11 |
O12 |
344.8 |
|
H7 |
C7 |
C8 |
O9A |
43.4 |
|
C8 |
C7 |
H7 |
C6 |
241.8 |
|
C8 |
C7 |
H7 |
N10 |
121.0 |
|
H7 |
C7 |
C6 |
H6 |
357.3 |
|
C6 |
C7 |
H7 |
N10 |
239.2 |
|
H7 |
C7 |
N10 |
C11 |
61.4 |
|
H7 |
C7 |
N10 |
H10 |
241.4 |
|
C13 |
C11 |
N10 |
O12 |
179.3 |
|
C11 |
N10 |
C7 |
H7 |
61.4 |
|
C7 |
N10 |
C11 |
H10 |
180.0 |
|
H10 |
N10 |
C7 |
H7 |
241.4 |
|
C7 |
N10 |
H10 |
C11 |
180.0 |
|
H10 |
N10 |
C11 |
O12 |
164.8 |
|
C13 |
C11 |
O12 |
N10 |
180.8 |
|
O12 |
C11 |
N10 |
H10 |
164.8 |
|