PDB Chemical Component CEP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CEP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
S1 C2 1.876 1.816
S1 C6 1.827 1.821
C2 C3 1.559 1.518
C2 H21 1.100 1.096
C2 H22 1.100 1.095
C3 C3' 1.379 1.509
C3 C4 1.567 1.352
C3' C2'   1.506
C3' H3'1 1.100 1.088
C3' H3'2 1.100 1.086
C2' O1'   1.223
C2' O2'   1.368
O2' C1'   1.431
C1' H1'1   1.092
C1' H1'2   1.093
C1' H1'3   1.093
C4 C4' 1.552 1.475
C4 N5 1.396 1.380
C4' O4A 1.257 1.212
C4' O4B 1.255 1.346
O4B HO4 0.950 0.981
N5 C6 1.475 1.449
C6 C7 1.549 1.523
C6 H6 1.100 1.095
C7 C8 1.531 1.509
C7 N10 1.459 1.436
C7 H7 1.100 1.092
C8 O9 1.231 1.229
C8 H88 1.081 1.104
N10 C11 1.325 1.393
N10 HN1 1.000 1.020
C11 O12 1.240 1.229
C11 C13 1.510 1.516
C13 C14 1.491 1.506
C13 H131 1.100 1.097
C13 H132 1.100 1.098
C14 C15 1.387 1.361
C14 S19 1.631 1.699
C15 C16 1.458 1.425
C15 H15 1.080 1.082
C16 C17 1.289 1.378
C16 H16 1.080 1.083
C17 S19 1.676 1.712
C17 H17 1.080 1.081
HN2 N5 1.000 1.016

Bond Angles for CEP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 S1 C6 99.9 98.0
S1 C2 C3 112.5 114.4
S1 C2 H21 108.5 106.2
S1 C2 H22 107.8 109.3
S1 C6 N5 111.7 110.7
S1 C6 C7 112.1 109.3
S1 C6 H6 105.4 108.5
C3 C2 H21 108.5 109.5
C3 C2 H22 107.8 109.8
C2 C3 C3' 119.1 112.4
C2 C3 C4 120.2 122.0
H21 C2 H22 111.9 107.5
C3' C3 C4 120.5 125.6
C3 C3' C2'   110.3
C3 C3' H3'1 136.2 108.4
C3 C3' H3'2 140.7 108.0
C3 C4 C4' 123.5 120.8
C3 C4 N5 120.4 124.9
C2' C3' H3'1   109.3
C2' C3' H3'2   110.1
C3' C2' O1'   126.5
C3' C2' O2'   107.8
H3'1 C3' H3'2 67.7 110.6
O1' C2' O2'   125.7
C2' O2' C1'   115.5
O2' C1' H1'1   109.6
O2' C1' H1'2   109.5
O2' C1' H1'3   109.0
H1'1 C1' H1'2   110.0
H1'1 C1' H1'3   109.4
H1'2 C1' H1'3   109.4
C4' C4 N5 116.0 114.3
C4 C4' O4A 118.7 124.1
C4 C4' O4B 119.1 109.2
C4 N5 C6 124.0 125.3
O4A C4' O4B 122.1 126.6
C4' O4B HO4 109.5 111.6
N5 C6 C7 107.2 109.8
N5 C6 H6 110.5 109.7
C7 C6 H6 110.0 108.8
C6 C7 C8 106.8 111.7
C6 C7 N10 112.3 111.2
C6 C7 H7 108.6 111.0
C8 C7 N10 107.0 107.4
C8 C7 H7 113.7 108.3
C7 C8 O9 119.8 123.5
C7 C8 H88 120.1 116.5
N10 C7 H7 108.4 107.1
C7 N10 C11 121.8 122.9
C7 N10 HN1 119.1 118.6
O9 C8 H88 120.1 119.8
C11 N10 HN1 119.1 118.5
N10 C11 O12 122.6 124.7
N10 C11 C13 116.3 111.8
O12 C11 C13 121.0 123.5
C11 C13 C14 117.7 113.4
C11 C13 H131 106.8 108.8
C11 C13 H132 104.9 108.6
C14 C13 H131 106.8 109.6
C14 C13 H132 104.9 109.8
C13 C14 C15 124.3 127.5
C13 C14 S19 121.4 118.7
H131 C13 H132 116.1 106.5
C15 C14 S19 114.2 113.8
C14 C15 C16 103.3 111.1
C14 C15 H15 128.4 124.5
C14 S19 C17 92.8 91.0
C16 C15 H15 128.3 124.3
C15 C16 C17 117.0 112.1
C15 C16 H16 121.5 124.6
C17 C16 H16 121.5 123.3
C16 C17 S19 109.7 112.0
C16 C17 H17 125.1 127.6
S19 C17 H17 125.1 120.4

Torsion Angles for CEP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 S1 C6 N5 57.7 51.2
C2 S1 C6 C7 178.1 172.3
C2 S1 C6 H6 297.7 290.8
C3 C2 S1 H21 240.0 120.9
C3 C2 S1 H22 118.7 236.5
S1 C2 C3 C3' 179.9 202.6
S1 C2 C3 C4 3.7 23.9
H21 C2 S1 H22 238.7 115.6
C6 S1 C2 C3 318.1 314.0
C6 S1 C2 H21 78.1 193.1
C6 S1 C2 H22 199.4 77.5
C4 N5 C6 S1 326.1 322.4
N5 C6 S1 C7 239.6 239.0
N5 C6 S1 H6 120.0 120.4
C7 C6 S1 H6 240.4 241.4
S1 C6 C7 C8 193.3 178.3
S1 C6 C7 N10 310.4 298.3
S1 C6 C7 H7 70.3 57.4
C3 C2 S1 C6 318.1 314.0
S1 C2 C3 H21 120.0 241.0
S1 C2 C3 H22 241.3 123.2
H21 C2 C3 H22 121.3 242.3
C3' C3 C2 C4 176.2 178.7
C2 C3 C3' C2'   91.0
C2 C3 C3' H3'1 331.4 331.3
C2 C3 C3' H3'2 85.5 211.4
C2 C3 C4 C4' 209.3 182.8
C2 C3 C4 N5 31.0 2.0
H21 C2 S1 C6 78.1 193.1
S1 C2 H21 C3 237.5 124.0
S1 C2 H21 H22 118.8 243.1
C3 C2 H21 H22 241.2 119.2
H21 C2 C3 C3' 59.9 321.7
H21 C2 C3 C4 243.7 142.9
H22 C2 S1 C6 199.4 77.5
S1 C2 H22 C3 121.7 233.8
S1 C2 H22 H21 240.8 114.8
C3 C2 H22 H21 119.2 241.0
H22 C2 C3 C3' 298.6 79.4
H22 C2 C3 C4 122.4 260.7
C3' C3 C2 H21 59.9 321.7
C3' C3 C2 H22 298.6 79.4
C2 C3 C3' C4 183.8 181.3
C3' C3 C4 C4' 33.1 4.2
C3' C3 C4 N5 214.9 183.4
C2' C3' C3 H3'1   119.7
C2' C3' C3 H3'2   239.6
C3 C3' C2' O1'   0.8
C3 C3' C2' O2'   181.7
H3'1 C3' C3 H3'2 245.9 119.9
C4 C3 C2 H21 243.7 142.9
C4 C3 C2 H22 122.4 260.7
C2 C3 C4 C3' 176.2 178.6
C4 C3 C3' C2'   269.7
C4 C3 C3' H3'1 147.6 150.0
C4 C3 C3' H3'2 261.7 30.1
C4' C4 C3 N5 178.2 180.9
C3 C4 C4' O4A 241.1 30.0
C3 C4 C4' O4B 64.4 210.0
C3 C4 N5 C6 345.5 6.3
C2' C3' C3 C4   269.7
C3 C3' C2' H3'1   240.8
C3 C3' C2' H3'2   119.1
H3'1 C3' C2' H3'2   238.3
O1' C2' C3' O2'   179.1
C3' C2' O2' C1'   179.1
H3'1 C3' C3 C4 147.6 150.0
C3 C3' H3'1 C2'   120.3
C3 C3' H3'1 H3'2 141.4 241.8
C2' C3' H3'1 H3'2   121.4
H3'1 C3' C2' O1'   120.0
H3'1 C3' C2' O2'   300.8
H3'2 C3' C3 C4 261.7 30.1
C3 C3' H3'2 C2'   239.5
C3 C3' H3'2 H3'1 223.0 118.5
C2' C3' H3'2 H3'1   239.1
H3'2 C3' C2' O1'   241.7
H3'2 C3' C2' O2'   62.5
O1' C2' C3' H3'1   120.0
O1' C2' C3' H3'2   241.7
C3' C2' O1' O2'   181.0
O1' C2' O2' C1'   360.0
O2' C2' C3' H3'1   300.8
O2' C2' C3' H3'2   62.5
C3' C2' O2' O1'   179.1
C2' O2' C1' H1'1   32.8
C2' O2' C1' H1'2   272.0
C2' O2' C1' H1'3   152.4
H1'1 C1' O2' H1'2   120.8
H1'1 C1' O2' H1'3   240.4
H1'2 C1' O2' H1'3   119.6
O2' C1' H1'1 H1'2   239.5
O2' C1' H1'1 H1'3   119.4
H1'2 C1' H1'1 H1'3   239.9
O2' C1' H1'2 H1'1   120.5
O2' C1' H1'2 H1'3   240.6
H1'1 C1' H1'2 H1'3   120.1
O2' C1' H1'3 H1'1   240.3
O2' C1' H1'3 H1'2   119.7
H1'1 C1' H1'3 H1'2   239.5
C3 C4 C4' N5 181.7 179.2
C4' C4 N5 C6 167.2 185.5
O4A C4' C4 O4B 176.7 180.0
C4 C4' O4B HO4 176.5 180.0
S1 C6 N5 C4 326.1 322.4
C3 C4 N5 C4' 178.3 180.8
N5 C4 C4' O4A 59.4 210.7
N5 C4 C4' O4B 242.7 30.8
C4 N5 C6 C7 202.9 201.6
C4 N5 C6 H6 83.1 82.1
O4A C4' C4 N5 59.4 210.7
C4 C4' O4A O4B 183.4 180.1
O4A C4' O4B HO4 360.0 0.0
O4B C4' C4 N5 242.7 30.8
C4 C4' O4B O4A 176.6 179.9
S1 C6 N5 C7 123.2 120.8
S1 C6 N5 H6 243.0 240.3
C7 C6 N5 H6 119.8 119.5
N5 C6 C7 C8 316.2 300.0
N5 C6 C7 N10 73.3 59.9
N5 C6 C7 H7 193.2 179.0
S1 C6 C7 N5 237.1 238.4
S1 C6 C7 H6 116.9 118.3
N5 C6 C7 H6 239.9 239.9
C8 C7 C6 N10 242.9 240.1
C8 C7 C6 H7 123.1 121.0
C6 C7 C8 O9 99.3 297.5
C6 C7 C8 H88 279.3 111.8
N10 C7 C6 H7 240.1 240.9
C6 C7 N10 C11 100.0 121.4
C6 C7 N10 HN1 280.0 301.4
S1 C6 H6 N5 120.8 121.0
S1 C6 H6 C7 239.0 241.2
N5 C6 H6 C7 118.2 120.1
H6 C6 C7 C8 76.4 60.0
H6 C6 C7 N10 193.5 180.0
H6 C6 C7 H7 313.3 299.0
C8 C7 C6 H6 76.4 60.0
C6 C7 C8 N10 120.5 122.2
C6 C7 C8 H7 240.2 237.5
N10 C7 C8 H7 119.7 115.3
C8 C7 N10 C11 217.0 243.9
C8 C7 N10 HN1 37.0 63.8
O9 C8 C7 H88 180.0 185.8
N10 C7 C6 H6 193.5 180.0
C6 C7 N10 C8 243.0 237.5
C6 C7 N10 H7 120.0 121.4
C8 C7 N10 H7 236.9 243.9
N10 C7 C8 O9 338.8 175.4
N10 C7 C8 H88 158.8 349.6
C11 N10 C7 HN1 180.0 180.0
C7 N10 C11 O12 354.9 360.0
C7 N10 C11 C13 178.4 179.8
H7 C7 C6 H6 313.3 299.0
C6 C7 H7 C8 118.8 123.0
C6 C7 H7 N10 237.7 238.5
C8 C7 H7 N10 118.9 115.5
H7 C7 C8 O9 219.1 60.0
H7 C7 C8 H88 39.1 234.3
H7 C7 N10 C11 340.1 360.0
H7 C7 N10 HN1 160.1 180.0
O9 C8 C7 N10 338.8 175.4
O9 C8 C7 H7 219.1 60.0
C7 C8 O9 H88 180.0 174.0
H88 C8 C7 N10 158.8 349.6
H88 C8 C7 H7 39.1 234.3
C7 C8 H88 O9 180.0 185.5
C11 N10 C7 H7 340.1 360.0
C7 N10 C11 HN1 180.0 180.0
O12 C11 N10 C13 176.6 180.2
N10 C11 C13 C14 106.1 92.1
N10 C11 C13 H131 226.1 329.9
N10 C11 C13 H132 349.9 214.4
HN1 N10 C7 H7 160.1 180.0
C7 N10 HN1 C11 180.0 180.0
HN1 N10 C11 O12 175.0 180.0
HN1 N10 C11 C13 358.4 359.8
O12 C11 N10 HN1 175.0 180.0
N10 C11 O12 C13 183.6 179.8
O12 C11 C13 C14 289.5 272.0
O12 C11 C13 H131 49.5 149.7
O12 C11 C13 H132 173.3 34.2
C13 C11 N10 HN1 358.4 359.8
N10 C11 C13 O12 176.6 180.2
C14 C13 C11 H131 240.0 122.2
C14 C13 C11 H132 116.2 237.7
C11 C13 C14 C15 274.3 58.2
C11 C13 C14 S19 90.7 238.3
H131 C13 C11 H132 236.2 115.5
C11 C13 C14 H131 120.0 238.2
C11 C13 C14 H132 243.8 121.6
H131 C13 C14 H132 123.8 243.4
C15 C14 C13 S19 183.6 180.0
C13 C14 C15 C16 158.6 180.0
C13 C14 C15 H15 338.6 360.0
C13 C14 S19 C17 197.1 179.9
C11 C13 H131 C14 233.3 124.5
C11 C13 H131 H132 116.6 243.1
C14 C13 H131 H132 243.4 118.7
H131 C13 C14 C15 154.3 180.0
H131 C13 C14 S19 330.7 0.0
C11 C13 H132 C14 124.7 235.6
C11 C13 H132 H131 242.3 117.0
C14 C13 H132 H131 117.7 241.4
H132 C13 C14 C15 30.4 296.6
H132 C13 C14 S19 206.9 116.7
C15 C14 C13 H131 154.3 180.0
C15 C14 C13 H132 30.4 296.6
C13 C14 C15 S19 176.7 180.0
C15 C14 S19 C17 13.8 360.0
C16 C15 C14 H15 180.0 180.1
C14 C15 C16 C17 15.7 0.0
C14 C15 C16 H16 195.7 180.1
S19 C14 C13 H131 330.7 0.0
S19 C14 C13 H132 206.9 116.7
C13 C14 S19 C15 183.2 180.0
S19 C14 C15 C16 341.9 0.0
S19 C14 C15 H15 161.9 179.9
C16 C17 S19 C14 356.2 0.0
C14 S19 C17 H17 176.2 179.9
C16 C15 C14 S19 341.9 0.0
C14 C15 C16 H15 180.0 179.9
C17 C16 C15 H16 180.0 180.0
C15 C16 C17 S19 353.3 360.0
C15 C16 C17 H17 173.3 180.1
H15 C15 C14 S19 161.9 179.9
C14 C15 H15 C16 180.0 180.1
H15 C15 C16 C17 195.7 180.1
H15 C15 C16 H16 15.7 0.1
C14 S19 C17 C16 356.2 0.0
C17 C16 C15 H15 195.7 180.1
C15 C16 C17 H16 180.0 180.0
S19 C17 C16 H17 180.0 179.9
H16 C16 C15 H15 15.7 0.1
C15 C16 H16 C17 180.0 180.0
H16 C16 C17 S19 173.3 179.9
H16 C16 C17 H17 353.3 0.1
S19 C17 C16 H16 173.3 179.9
C16 C17 S19 H17 180.0 180.1
H17 C17 C16 H16 353.3 0.1
C16 C17 H17 S19 180.0 179.8