PDB Chemical Component CEO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CEO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| S1 |
C2 |
1.863 |
1.821 |
| S1 |
C6 |
1.826 |
1.815 |
| C2 |
C3 |
1.534 |
1.515 |
| C2 |
HC21 |
1.116 |
1.089 |
| C2 |
HC22 |
1.114 |
1.091 |
| C3 |
C3' |
1.390 |
1.329 |
| C3 |
C4 |
1.579 |
1.469 |
| C3' |
H3'1 |
1.103 |
1.080 |
| C3' |
H3'2 |
1.103 |
1.080 |
| C4 |
C4' |
1.567 |
1.487 |
| C4 |
N5 |
1.447 |
1.276 |
| C4' |
O4A |
1.266 |
1.346 |
| C4' |
O4B |
1.259 |
1.213 |
| O4A |
H4A |
0.950 |
0.967 |
| N5 |
C6 |
1.508 |
1.453 |
| C6 |
C7 |
1.586 |
1.530 |
| C6 |
HC6 |
1.116 |
1.090 |
| C7 |
C8 |
1.524 |
1.507 |
| C7 |
N10 |
1.442 |
1.464 |
| C7 |
HC7 |
1.114 |
1.088 |
| C8 |
O9 |
1.260 |
1.207 |
| C8 |
HC8 |
1.103 |
1.080 |
| N10 |
C11 |
1.315 |
1.348 |
| N10 |
H10 |
1.020 |
0.969 |
| C11 |
O12 |
1.243 |
1.213 |
| C11 |
C13 |
1.510 |
1.506 |
| C13 |
C14 |
1.490 |
1.507 |
| C13 |
H131 |
1.115 |
1.090 |
| C13 |
H132 |
1.115 |
1.089 |
| C14 |
C15 |
1.401 |
1.356 |
| C14 |
S19 |
1.626 |
1.784 |
| C15 |
C16 |
1.458 |
1.383 |
| C15 |
H15 |
1.103 |
1.080 |
| C16 |
C17 |
1.291 |
1.355 |
| C16 |
H16 |
1.103 |
1.079 |
| C17 |
S19 |
1.686 |
1.785 |
| C17 |
H17 |
1.102 |
1.080 |
Bond Angles for CEO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
S1 |
C6 |
104.5 |
98.9 |
| S1 |
C2 |
C3 |
112.6 |
107.0 |
| S1 |
C2 |
HC21 |
111.1 |
110.0 |
| S1 |
C2 |
HC22 |
111.0 |
109.9 |
| S1 |
C6 |
N5 |
111.4 |
110.8 |
| S1 |
C6 |
C7 |
109.3 |
109.1 |
| S1 |
C6 |
HC6 |
110.6 |
109.2 |
| C3 |
C2 |
HC21 |
111.0 |
110.1 |
| C3 |
C2 |
HC22 |
111.1 |
109.8 |
| C2 |
C3 |
C3' |
118.4 |
120.5 |
| C2 |
C3 |
C4 |
119.9 |
119.0 |
| HC21 |
C2 |
HC22 |
99.3 |
109.9 |
| C3' |
C3 |
C4 |
121.6 |
120.5 |
| C3 |
C3' |
H3'1 |
121.7 |
120.0 |
| C3 |
C3' |
H3'2 |
118.4 |
120.0 |
| C3 |
C4 |
C4' |
121.5 |
117.4 |
| C3 |
C4 |
N5 |
122.3 |
125.2 |
| H3'1 |
C3' |
H3'2 |
120.0 |
119.9 |
| C4' |
C4 |
N5 |
116.1 |
117.4 |
| C4 |
C4' |
O4A |
118.5 |
120.0 |
| C4 |
C4' |
O4B |
119.5 |
120.0 |
| C4 |
N5 |
C6 |
127.7 |
127.5 |
| O4A |
C4' |
O4B |
121.9 |
120.0 |
| C4' |
O4A |
H4A |
118.5 |
120.0 |
| N5 |
C6 |
C7 |
115.4 |
109.3 |
| N5 |
C6 |
HC6 |
103.8 |
109.2 |
| C7 |
C6 |
HC6 |
106.0 |
109.3 |
| C6 |
C7 |
C8 |
117.4 |
109.4 |
| C6 |
C7 |
N10 |
116.0 |
109.4 |
| C6 |
C7 |
HC7 |
97.5 |
109.5 |
| C8 |
C7 |
N10 |
107.3 |
109.5 |
| C8 |
C7 |
HC7 |
108.0 |
109.4 |
| C7 |
C8 |
O9 |
116.6 |
120.0 |
| C7 |
C8 |
HC8 |
130.5 |
120.0 |
| N10 |
C7 |
HC7 |
109.8 |
109.6 |
| C7 |
N10 |
C11 |
121.3 |
120.0 |
| C7 |
N10 |
H10 |
124.0 |
120.1 |
| O9 |
C8 |
HC8 |
112.9 |
120.0 |
| C11 |
N10 |
H10 |
114.7 |
120.0 |
| N10 |
C11 |
O12 |
122.7 |
120.0 |
| N10 |
C11 |
C13 |
115.1 |
120.0 |
| O12 |
C11 |
C13 |
122.0 |
120.0 |
| C11 |
C13 |
C14 |
120.3 |
109.5 |
| C11 |
C13 |
H131 |
108.3 |
109.5 |
| C11 |
C13 |
H132 |
108.3 |
109.5 |
| C14 |
C13 |
H131 |
108.4 |
109.4 |
| C14 |
C13 |
H132 |
108.4 |
109.5 |
| C13 |
C14 |
C15 |
125.4 |
129.0 |
| C13 |
C14 |
S19 |
119.6 |
129.1 |
| H131 |
C13 |
H132 |
101.6 |
109.4 |
| C15 |
C14 |
S19 |
115.0 |
101.9 |
| C14 |
C15 |
C16 |
104.4 |
119.0 |
| C14 |
C15 |
H15 |
126.3 |
120.5 |
| C14 |
S19 |
C17 |
93.1 |
98.2 |
| C16 |
C15 |
H15 |
129.3 |
120.5 |
| C15 |
C16 |
C17 |
117.1 |
119.0 |
| C15 |
C16 |
H16 |
127.1 |
120.5 |
| C17 |
C16 |
H16 |
115.8 |
120.6 |
| C16 |
C17 |
S19 |
110.3 |
101.9 |
| C16 |
C17 |
H17 |
114.1 |
129.0 |
| S19 |
C17 |
H17 |
135.6 |
129.1 |
Torsion Angles for CEO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
S1 |
C6 |
N5 |
45.4 |
50.1 |
| C2 |
S1 |
C6 |
C7 |
174.1 |
170.5 |
| C2 |
S1 |
C6 |
HC6 |
290.5 |
289.8 |
| C3 |
C2 |
S1 |
HC21 |
234.8 |
240.4 |
| C3 |
C2 |
S1 |
HC22 |
125.3 |
119.2 |
| S1 |
C2 |
C3 |
C3' |
210.7 |
223.4 |
| S1 |
C2 |
C3 |
C4 |
30.2 |
43.8 |
| HC21 |
C2 |
S1 |
HC22 |
250.5 |
238.8 |
| C6 |
S1 |
C2 |
C3 |
310.3 |
301.9 |
| C6 |
S1 |
C2 |
HC21 |
75.5 |
61.5 |
| C6 |
S1 |
C2 |
HC22 |
185.0 |
182.7 |
| C4 |
N5 |
C6 |
S1 |
336.4 |
334.5 |
| N5 |
C6 |
S1 |
C7 |
231.3 |
239.7 |
| N5 |
C6 |
S1 |
HC6 |
114.9 |
120.3 |
| C7 |
C6 |
S1 |
HC6 |
243.6 |
240.6 |
| S1 |
C6 |
C7 |
C8 |
154.1 |
178.7 |
| S1 |
C6 |
C7 |
N10 |
282.9 |
298.6 |
| S1 |
C6 |
C7 |
HC7 |
39.3 |
58.7 |
| C3 |
C2 |
S1 |
C6 |
310.3 |
301.9 |
| S1 |
C2 |
C3 |
HC21 |
125.2 |
119.5 |
| S1 |
C2 |
C3 |
HC22 |
234.8 |
240.7 |
| HC21 |
C2 |
C3 |
HC22 |
109.5 |
121.2 |
| C3' |
C3 |
C2 |
C4 |
180.6 |
179.6 |
| C2 |
C3 |
C3' |
H3'1 |
359.4 |
172.9 |
| C2 |
C3 |
C3' |
H3'2 |
180.0 |
352.9 |
| C2 |
C3 |
C4 |
C4' |
174.8 |
168.3 |
| C2 |
C3 |
C4 |
N5 |
358.0 |
348.0 |
| HC21 |
C2 |
S1 |
C6 |
75.5 |
61.5 |
| S1 |
C2 |
HC21 |
C3 |
233.9 |
242.4 |
| S1 |
C2 |
HC21 |
HC22 |
116.9 |
121.2 |
| C3 |
C2 |
HC21 |
HC22 |
243.0 |
238.8 |
| HC21 |
C2 |
C3 |
C3' |
85.5 |
103.9 |
| HC21 |
C2 |
C3 |
C4 |
264.9 |
284.3 |
| HC22 |
C2 |
S1 |
C6 |
185.0 |
182.7 |
| S1 |
C2 |
HC22 |
C3 |
126.1 |
117.4 |
| S1 |
C2 |
HC22 |
HC21 |
243.0 |
238.8 |
| C3 |
C2 |
HC22 |
HC21 |
116.9 |
121.3 |
| HC22 |
C2 |
C3 |
C3' |
336.0 |
342.6 |
| HC22 |
C2 |
C3 |
C4 |
155.4 |
163.1 |
| C3' |
C3 |
C2 |
HC21 |
85.5 |
103.9 |
| C3' |
C3 |
C2 |
HC22 |
336.0 |
342.6 |
| C2 |
C3 |
C3' |
C4 |
179.4 |
180.4 |
| C3' |
C3 |
C4 |
C4' |
354.2 |
348.7 |
| C3' |
C3 |
C4 |
N5 |
177.4 |
168.4 |
| H3'1 |
C3' |
C3 |
H3'2 |
179.3 |
180.0 |
| C4 |
C3 |
C2 |
HC21 |
264.9 |
284.3 |
| C4 |
C3 |
C2 |
HC22 |
155.4 |
163.1 |
| C2 |
C3 |
C4 |
C3' |
180.6 |
179.6 |
| C4 |
C3 |
C3' |
H3'1 |
180.0 |
352.5 |
| C4 |
C3 |
C3' |
H3'2 |
0.6 |
172.5 |
| C4' |
C4 |
C3 |
N5 |
176.8 |
180.3 |
| C3 |
C4 |
C4' |
O4A |
229.3 |
173.1 |
| C3 |
C4 |
C4' |
O4B |
47.1 |
353.1 |
| C3 |
C4 |
N5 |
C6 |
358.0 |
1.1 |
| H3'1 |
C3' |
C3 |
C4 |
180.0 |
352.5 |
| C3 |
C3' |
H3'1 |
H3'2 |
180.7 |
180.0 |
| H3'2 |
C3' |
C3 |
C4 |
0.6 |
172.5 |
| C3 |
C3' |
H3'2 |
H3'1 |
179.4 |
180.0 |
| C3 |
C4 |
C4' |
N5 |
183.0 |
179.7 |
| C4' |
C4 |
N5 |
C6 |
181.1 |
180.9 |
| O4A |
C4' |
C4 |
O4B |
182.2 |
180.0 |
| C4 |
C4' |
O4A |
H4A |
180.0 |
180.1 |
| S1 |
C6 |
N5 |
C4 |
336.4 |
334.5 |
| C3 |
C4 |
N5 |
C4' |
177.0 |
180.3 |
| N5 |
C4 |
C4' |
O4A |
46.2 |
353.4 |
| N5 |
C4 |
C4' |
O4B |
224.1 |
173.4 |
| C4 |
N5 |
C6 |
C7 |
211.0 |
214.3 |
| C4 |
N5 |
C6 |
HC6 |
95.4 |
94.8 |
| O4A |
C4' |
C4 |
N5 |
46.2 |
353.4 |
| C4 |
C4' |
O4A |
O4B |
177.8 |
180.0 |
| O4B |
C4' |
C4 |
N5 |
224.1 |
173.4 |
| C4 |
C4' |
O4B |
O4A |
182.2 |
180.0 |
| O4B |
C4' |
O4A |
H4A |
2.2 |
0.0 |
| H4A |
O4A |
C4' |
O4B |
2.2 |
0.0 |
| S1 |
C6 |
N5 |
C7 |
125.4 |
120.2 |
| S1 |
C6 |
N5 |
HC6 |
241.0 |
239.7 |
| C7 |
C6 |
N5 |
HC6 |
115.6 |
119.4 |
| N5 |
C6 |
C7 |
C8 |
280.5 |
299.9 |
| N5 |
C6 |
C7 |
N10 |
49.4 |
59.9 |
| N5 |
C6 |
C7 |
HC7 |
165.7 |
180.0 |
| S1 |
C6 |
C7 |
N5 |
233.5 |
238.7 |
| S1 |
C6 |
C7 |
HC6 |
119.3 |
119.3 |
| N5 |
C6 |
C7 |
HC6 |
245.7 |
240.6 |
| C8 |
C7 |
C6 |
N10 |
231.2 |
240.0 |
| C8 |
C7 |
C6 |
HC7 |
114.8 |
119.9 |
| C6 |
C7 |
C8 |
O9 |
29.8 |
120.0 |
| C6 |
C7 |
C8 |
HC8 |
209.8 |
300.0 |
| N10 |
C7 |
C6 |
HC7 |
243.6 |
239.9 |
| C6 |
C7 |
N10 |
C11 |
96.0 |
150.0 |
| C6 |
C7 |
N10 |
H10 |
275.9 |
330.1 |
| S1 |
C6 |
HC6 |
N5 |
119.5 |
121.3 |
| S1 |
C6 |
HC6 |
C7 |
241.6 |
240.7 |
| N5 |
C6 |
HC6 |
C7 |
122.0 |
119.5 |
| HC6 |
C6 |
C7 |
C8 |
34.8 |
59.3 |
| HC6 |
C6 |
C7 |
N10 |
163.7 |
179.3 |
| HC6 |
C6 |
C7 |
HC7 |
280.0 |
299.4 |
| C8 |
C7 |
C6 |
HC6 |
34.8 |
59.3 |
| C6 |
C7 |
C8 |
N10 |
132.8 |
119.9 |
| C6 |
C7 |
C8 |
HC7 |
251.2 |
240.0 |
| N10 |
C7 |
C8 |
HC7 |
118.3 |
120.1 |
| C8 |
C7 |
N10 |
C11 |
229.6 |
269.9 |
| C8 |
C7 |
N10 |
H10 |
49.5 |
90.0 |
| O9 |
C8 |
C7 |
HC8 |
180.0 |
180.0 |
| N10 |
C7 |
C6 |
HC6 |
163.7 |
179.3 |
| C6 |
C7 |
N10 |
C8 |
226.4 |
240.1 |
| C6 |
C7 |
N10 |
HC7 |
109.2 |
120.1 |
| C8 |
C7 |
N10 |
HC7 |
242.8 |
240.0 |
| N10 |
C7 |
C8 |
O9 |
256.9 |
0.0 |
| N10 |
C7 |
C8 |
HC8 |
76.9 |
180.1 |
| C11 |
N10 |
C7 |
H10 |
180.1 |
179.9 |
| C7 |
N10 |
C11 |
O12 |
357.3 |
0.1 |
| C7 |
N10 |
C11 |
C13 |
172.0 |
180.0 |
| HC7 |
C7 |
C6 |
HC6 |
280.0 |
299.4 |
| C6 |
C7 |
HC7 |
C8 |
122.1 |
119.9 |
| C6 |
C7 |
HC7 |
N10 |
238.9 |
240.0 |
| C8 |
C7 |
HC7 |
N10 |
116.8 |
120.0 |
| HC7 |
C7 |
C8 |
O9 |
138.6 |
239.9 |
| HC7 |
C7 |
C8 |
HC8 |
318.6 |
60.0 |
| HC7 |
C7 |
N10 |
C11 |
346.8 |
30.0 |
| HC7 |
C7 |
N10 |
H10 |
166.7 |
210.0 |
| O9 |
C8 |
C7 |
N10 |
256.9 |
0.0 |
| O9 |
C8 |
C7 |
HC7 |
138.6 |
239.9 |
| C7 |
C8 |
O9 |
HC8 |
180.0 |
180.0 |
| HC8 |
C8 |
C7 |
N10 |
76.9 |
180.1 |
| HC8 |
C8 |
C7 |
HC7 |
318.6 |
60.0 |
| C7 |
C8 |
HC8 |
O9 |
180.0 |
180.0 |
| C11 |
N10 |
C7 |
HC7 |
346.8 |
30.0 |
| C7 |
N10 |
C11 |
H10 |
179.9 |
180.1 |
| O12 |
C11 |
N10 |
C13 |
185.2 |
180.1 |
| N10 |
C11 |
C13 |
C14 |
138.5 |
180.0 |
| N10 |
C11 |
C13 |
H131 |
263.8 |
300.0 |
| N10 |
C11 |
C13 |
H132 |
13.2 |
60.0 |
| H10 |
N10 |
C7 |
HC7 |
166.7 |
210.0 |
| C7 |
N10 |
H10 |
C11 |
180.1 |
179.9 |
| H10 |
N10 |
C11 |
O12 |
177.4 |
180.0 |
| H10 |
N10 |
C11 |
C13 |
352.1 |
359.9 |
| O12 |
C11 |
N10 |
H10 |
177.4 |
180.0 |
| N10 |
C11 |
O12 |
C13 |
174.4 |
179.9 |
| O12 |
C11 |
C13 |
C14 |
313.3 |
360.0 |
| O12 |
C11 |
C13 |
H131 |
78.6 |
120.0 |
| O12 |
C11 |
C13 |
H132 |
188.0 |
239.9 |
| C13 |
C11 |
N10 |
H10 |
352.1 |
359.9 |
| N10 |
C11 |
C13 |
O12 |
185.2 |
180.1 |
| C14 |
C13 |
C11 |
H131 |
234.7 |
240.0 |
| C14 |
C13 |
C11 |
H132 |
125.3 |
120.0 |
| C11 |
C13 |
C14 |
C15 |
35.0 |
89.7 |
| C11 |
C13 |
C14 |
S19 |
214.2 |
270.0 |
| H131 |
C13 |
C11 |
H132 |
250.6 |
240.0 |
| C11 |
C13 |
C14 |
H131 |
125.3 |
120.0 |
| C11 |
C13 |
C14 |
H132 |
234.7 |
240.0 |
| H131 |
C13 |
C14 |
H132 |
109.5 |
119.9 |
| C15 |
C14 |
C13 |
S19 |
180.9 |
179.7 |
| C13 |
C14 |
C15 |
C16 |
179.5 |
179.8 |
| C13 |
C14 |
C15 |
H15 |
359.5 |
0.3 |
| C13 |
C14 |
S19 |
C17 |
180.5 |
180.0 |
| C11 |
C13 |
H131 |
C14 |
228.0 |
240.0 |
| C11 |
C13 |
H131 |
H132 |
113.9 |
120.0 |
| C14 |
C13 |
H131 |
H132 |
246.0 |
240.0 |
| H131 |
C13 |
C14 |
C15 |
269.8 |
329.7 |
| H131 |
C13 |
C14 |
S19 |
88.9 |
150.0 |
| C11 |
C13 |
H132 |
C14 |
132.0 |
120.0 |
| C11 |
C13 |
H132 |
H131 |
246.1 |
240.0 |
| C14 |
C13 |
H132 |
H131 |
114.0 |
119.9 |
| H132 |
C13 |
C14 |
C15 |
160.3 |
209.8 |
| H132 |
C13 |
C14 |
S19 |
339.4 |
30.1 |
| C15 |
C14 |
C13 |
H131 |
269.8 |
329.7 |
| C15 |
C14 |
C13 |
H132 |
160.3 |
209.8 |
| C13 |
C14 |
C15 |
S19 |
179.2 |
180.2 |
| C15 |
C14 |
S19 |
C17 |
359.7 |
0.2 |
| C16 |
C15 |
C14 |
H15 |
180.0 |
179.6 |
| C14 |
C15 |
C16 |
C17 |
359.8 |
0.5 |
| C14 |
C15 |
C16 |
H16 |
179.8 |
180.3 |
| S19 |
C14 |
C13 |
H131 |
88.9 |
150.0 |
| S19 |
C14 |
C13 |
H132 |
339.4 |
30.1 |
| C13 |
C14 |
S19 |
C15 |
180.8 |
179.8 |
| S19 |
C14 |
C15 |
C16 |
0.3 |
359.6 |
| S19 |
C14 |
C15 |
H15 |
180.3 |
180.0 |
| C16 |
C17 |
S19 |
C14 |
0.1 |
0.0 |
| C14 |
S19 |
C17 |
H17 |
180.1 |
180.0 |
| C16 |
C15 |
C14 |
S19 |
0.3 |
359.6 |
| C14 |
C15 |
C16 |
H15 |
180.0 |
180.4 |
| C17 |
C16 |
C15 |
H16 |
180.0 |
180.2 |
| C15 |
C16 |
C17 |
S19 |
0.0 |
359.7 |
| C15 |
C16 |
C17 |
H17 |
180.0 |
179.8 |
| H15 |
C15 |
C14 |
S19 |
180.3 |
180.0 |
| C14 |
C15 |
H15 |
C16 |
180.0 |
179.6 |
| H15 |
C15 |
C16 |
C17 |
179.8 |
180.1 |
| H15 |
C15 |
C16 |
H16 |
359.8 |
359.8 |
| C14 |
S19 |
C17 |
C16 |
0.1 |
0.0 |
| C17 |
C16 |
C15 |
H15 |
179.8 |
180.1 |
| C15 |
C16 |
C17 |
H16 |
180.0 |
179.8 |
| S19 |
C17 |
C16 |
H17 |
180.0 |
180.0 |
| H16 |
C16 |
C15 |
H15 |
359.8 |
359.8 |
| C15 |
C16 |
H16 |
C17 |
180.0 |
180.2 |
| H16 |
C16 |
C17 |
S19 |
180.0 |
180.0 |
| H16 |
C16 |
C17 |
H17 |
0.0 |
0.0 |
| S19 |
C17 |
C16 |
H16 |
180.0 |
180.0 |
| C16 |
C17 |
S19 |
H17 |
180.0 |
180.0 |
| H17 |
C17 |
C16 |
H16 |
0.0 |
0.0 |
| C16 |
C17 |
H17 |
S19 |
180.0 |
180.0 |