PDB Chemical Component CEN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CEN

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
S1 C2 1.831 1.799
S1 C6 1.803 1.822
C2 C3 1.544 1.492
C2 HC21 1.100 1.090
C2 HC22 1.100 1.089
C3 C4 1.397 1.328
C3 C13 1.514 1.506
C4 N5 1.433 1.401
C4 C10 1.537 1.474
N5 C6 1.473 1.489
N5 C8 1.409 1.327
C6 C7 1.569 1.519
C6 HC6 1.100 1.090
C7 C8 1.589 1.512
C7 N14 1.470 1.464
C7 HC7 1.100 1.090
C8 O9 1.216 1.213
C13 O3 1.441 1.452
C13 H131 1.100 1.090
C13 H132 1.100 1.090
N14 C15 1.379 1.349
N14 H14 1.000 0.970
C15 O16 1.237 1.212
C15 C17 1.524 1.507
C17 C5 1.538 1.530
C17 H171 1.100 1.090
C17 H172 1.100 1.090
C1 O2 1.210 1.209
C1 O3 1.344 1.343
C1 C 1.532 1.507
C HC1 1.100 1.090
C HC2 1.100 1.090
C HC3 1.100 1.090
C5 C9 1.549 1.530
C5 HC51 1.100 1.090
C5 HC52 1.100 1.089
C9 C11 1.532 1.507
C9 HC91 1.099 1.091
C9 HC92 1.100 1.090
C11 O 1.232 1.342
C11 O1 1.227 1.209
O HO 0.950 0.966
C10 O4 1.254 1.348
C10 O5 1.254 1.215
O4 HO4 0.950 0.967

Bond Angles for CEN

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 S1 C6 98.0 99.1
S1 C2 C3 118.3 113.1
S1 C2 HC21 104.6 108.8
S1 C2 HC22 106.6 108.9
S1 C6 N5 106.0 106.6
S1 C6 C7 117.7 116.0
S1 C6 HC6 102.1 113.6
C3 C2 HC21 104.5 109.2
C3 C2 HC22 106.6 108.0
C2 C3 C4 123.8 127.7
C2 C3 C13 108.9 116.2
HC21 C2 HC22 116.7 108.8
C4 C3 C13 127.2 116.1
C3 C4 N5 116.2 119.2
C3 C4 C10 125.3 120.4
C3 C13 O3 111.5 109.5
C3 C13 H131 108.3 109.5
C3 C13 H132 108.8 109.5
N5 C4 C10 118.4 120.4
C4 N5 C6 127.8 127.1
C4 N5 C8 137.4 142.7
C4 C10 O4 117.6 120.0
C4 C10 O5 117.6 120.0
C6 N5 C8 94.7 89.9
N5 C6 C7 89.8 89.0
N5 C6 HC6 126.1 114.6
N5 C8 C7 91.3 95.8
N5 C8 O9 134.6 132.1
C7 C6 HC6 115.9 114.4
C6 C7 C8 84.3 82.2
C6 C7 N14 105.6 114.4
C6 C7 HC7 127.2 114.4
C8 C7 N14 112.7 114.4
C8 C7 HC7 121.3 114.4
C7 C8 O9 134.1 132.1
N14 C7 HC7 104.5 113.5
C7 N14 C15 119.4 120.0
C7 N14 H14 120.3 120.0
O3 C13 H131 108.4 109.5
O3 C13 H132 108.8 109.4
C13 O3 C1 116.3 120.0
H131 C13 H132 111.0 109.4
C15 N14 H14 120.3 120.0
N14 C15 O16 122.7 120.0
N14 C15 C17 115.7 120.0
O16 C15 C17 121.6 120.0
C15 C17 C5 114.7 109.4
C15 C17 H171 106.6 109.5
C15 C17 H172 107.8 109.5
C5 C17 H171 106.6 109.5
C5 C17 H172 107.8 109.5
C17 C5 C9 114.5 109.5
C17 C5 HC51 106.7 109.4
C17 C5 HC52 107.8 109.4
H171 C17 H172 113.6 109.4
O2 C1 O3 124.1 120.0
O2 C1 C 126.4 120.0
O3 C1 C 109.5 120.0
C1 C HC1 109.4 109.4
C1 C HC2 109.5 109.5
C1 C HC3 109.5 109.5
HC1 C HC2 109.5 109.5
HC1 C HC3 109.5 109.5
HC2 C HC3 109.4 109.5
C9 C5 HC51 106.7 109.5
C9 C5 HC52 107.8 109.5
C5 C9 C11 116.3 109.5
C5 C9 HC91 105.7 109.5
C5 C9 HC92 107.2 109.6
HC51 C5 HC52 113.5 109.5
C11 C9 HC91 105.7 109.4
C11 C9 HC92 107.2 109.4
C9 C11 O 116.8 120.0
C9 C11 O1 118.3 120.0
HC91 C9 HC92 115.0 109.5
O C11 O1 124.9 120.0
C11 O HO 109.5 120.0
O4 C10 O5 124.8 120.0
C10 O4 HO4 109.5 120.0

Torsion Angles for CEN

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 S1 C6 N5 54.2 53.1
C2 S1 C6 C7 152.5 150.3
C2 S1 C6 HC6 280.6 285.9
C3 C2 S1 HC21 115.8 121.6
C3 C2 S1 HC22 240.0 240.0
S1 C2 C3 C4 8.0 23.0
S1 C2 C3 C13 185.5 203.3
HC21 C2 S1 HC22 124.2 118.4
C6 S1 C2 C3 324.1 314.5
C6 S1 C2 HC21 208.3 193.0
C6 S1 C2 HC22 84.1 74.6
C4 N5 C6 S1 300.2 314.9
S1 C6 N5 C8 117.5 130.4
N5 C6 S1 C7 261.6 262.7
N5 C6 S1 HC6 133.5 127.2
C7 C6 S1 HC6 231.9 224.4
S1 C6 C7 C8 253.2 240.0
S1 C6 C7 N14 5.2 353.3
S1 C6 C7 HC7 127.8 126.7
C3 C2 S1 C6 324.1 314.5
S1 C2 C3 HC21 244.2 238.6
S1 C2 C3 HC22 120.0 120.5
HC21 C2 C3 HC22 235.8 241.9
C4 C3 C2 C13 182.4 179.7
C2 C3 C4 N5 3.9 358.2
C2 C3 C4 C10 179.8 178.1
C2 C3 C13 O3 271.3 355.7
C2 C3 C13 H131 152.2 235.7
C2 C3 C13 H132 31.3 115.6
HC21 C2 S1 C6 208.3 193.0
S1 C2 HC21 C3 125.0 123.9
S1 C2 HC21 HC22 242.5 241.5
C3 C2 HC21 HC22 117.4 117.7
HC21 C2 C3 C4 123.8 144.4
HC21 C2 C3 C13 301.3 324.6
HC22 C2 S1 C6 84.1 74.6
S1 C2 HC22 C3 232.7 236.9
S1 C2 HC22 HC21 116.4 118.4
C3 C2 HC22 HC21 243.7 241.6
HC22 C2 C3 C4 248.0 262.5
HC22 C2 C3 C13 65.5 82.8
C4 C3 C2 HC21 123.8 144.4
C4 C3 C2 HC22 248.0 262.5
C2 C3 C4 C13 177.1 180.3
C4 C3 C13 O3 88.8 175.9
C4 C3 C13 H131 329.6 55.9
C4 C3 C13 H132 208.8 295.9
N5 C4 C3 C10 184.1 180.1
C3 C4 N5 C6 26.2 15.6
C3 C4 N5 C8 210.2 203.0
C3 C4 C10 O4 243.2 6.1
C3 C4 C10 O5 61.2 186.1
C13 C3 C2 HC21 301.3 324.6
C13 C3 C2 HC22 65.5 82.8
C2 C3 C13 C4 182.5 179.8
C13 C3 C4 N5 186.8 177.9
C13 C3 C4 C10 2.7 357.8
O3 C13 C3 H131 119.1 120.0
O3 C13 C3 H132 240.0 240.0
C3 C13 O3 C1 180.6 185.0
H131 C13 C3 H132 120.8 120.0
S1 C6 N5 C4 300.2 314.9
N5 C4 C3 C13 186.8 177.9
C3 C4 N5 C10 176.2 179.9
N5 C4 C10 O4 58.9 186.1
N5 C4 C10 O5 236.9 6.0
C6 N5 C4 C8 176.0 172.6
C4 N5 C6 C7 181.4 198.0
C4 N5 C6 HC6 58.9 81.5
C4 N5 C8 C7 178.2 160.5
C4 N5 C8 O9 358.5 340.4
C10 C4 C3 C13 2.7 357.8
C3 C4 C10 N5 184.2 180.1
C10 C4 N5 C6 210.0 195.6
C10 C4 N5 C8 34.0 23.1
O4 C10 C4 O5 182.0 180.1
C4 C10 O4 HO4 177.8 185.0
S1 C6 N5 C7 118.9 116.9
S1 C6 N5 HC6 241.3 233.4
C6 N5 C4 C10 210.0 195.6
C4 N5 C6 C8 182.7 184.5
C6 N5 C8 C7 1.3 346.4
C6 N5 C8 O9 181.7 166.4
C7 C6 N5 HC6 122.5 116.5
N5 C6 C7 C8 1.2 348.1
N5 C6 C7 N14 113.2 101.4
N5 C6 C7 HC7 235.8 234.8
C8 N5 C4 C10 34.0 23.1
C4 N5 C8 C6 176.8 174.1
C8 N5 C6 C7 358.7 13.5
C8 N5 C6 HC6 236.2 257.0
C6 C7 C8 N5 358.8 13.5
N5 C8 C7 N14 254.2 260.2
N5 C8 C7 HC7 129.3 126.8
C7 C8 N5 O9 179.6 180.0
S1 C6 C7 N5 252.0 251.9
S1 C6 C7 HC6 121.2 135.2
C7 C6 N5 C8 358.7 13.5
N5 C6 C7 HC6 229.2 243.3
N5 C8 C7 C6 358.8 13.5
C8 C7 C6 N14 248.0 246.6
C8 C7 C6 HC7 125.4 113.3
C6 C7 C8 O9 178.4 193.5
N14 C7 C6 HC7 237.4 226.7
C6 C7 N14 C15 124.6 155.0
C6 C7 N14 H14 304.6 335.0
S1 C6 HC6 N5 120.4 122.9
S1 C6 HC6 C7 230.7 223.7
HC6 C6 N5 C8 236.2 257.0
N5 C6 HC6 C7 110.4 100.8
HC6 C6 C7 C8 132.0 104.7
HC6 C6 C7 N14 243.9 218.1
HC6 C6 C7 HC7 6.6 351.4
N5 C8 C7 O9 180.4 180.0
C8 C7 C6 HC6 132.0 104.7
C6 C7 C8 N14 104.6 113.3
C6 C7 C8 HC7 229.5 246.7
N14 C7 C8 HC7 124.9 133.3
C8 C7 N14 C15 214.9 247.5
C8 C7 N14 H14 34.9 67.5
N14 C7 C6 HC6 243.9 218.1
C6 C7 N14 C8 269.7 267.5
C6 C7 N14 HC7 136.1 133.8
C8 C7 N14 HC7 226.4 226.2
N14 C7 C8 O9 73.8 80.2
C15 N14 C7 H14 180.0 180.0
C7 N14 C15 O16 1.1 360.0
C7 N14 C15 C17 179.7 180.0
HC7 C7 C6 HC6 6.6 351.4
C6 C7 HC7 C8 108.3 92.4
C6 C7 HC7 N14 236.9 226.2
C8 C7 HC7 N14 128.6 133.8
HC7 C7 C8 O9 308.9 306.8
HC7 C7 N14 C15 348.5 21.2
HC7 C7 N14 H14 168.5 201.3
N5 C8 O9 C7 179.5 180.0
O9 C8 C7 N14 73.8 80.2
O9 C8 C7 HC7 308.9 306.8
C3 C13 O3 H131 240.9 240.0
C3 C13 O3 H132 120.0 120.0
H131 C13 O3 H132 239.1 240.0
O2 C1 O3 C13 276.2 5.0
C13 O3 C1 C 96.8 185.0
C3 C13 H131 O3 121.1 120.0
C3 C13 H131 H132 240.6 240.0
O3 C13 H131 H132 119.5 119.9
H131 C13 O3 C1 299.7 305.0
C3 C13 H132 O3 238.4 240.0
C3 C13 H132 H131 119.2 120.0
O3 C13 H132 H131 240.8 240.0
H132 C13 O3 C1 60.6 65.0
C15 N14 C7 HC7 348.5 21.2
C7 N14 C15 H14 180.0 180.0
O16 C15 N14 C17 181.4 180.0
N14 C15 C17 C5 90.8 180.0
N14 C15 C17 H171 333.1 300.0
N14 C15 C17 H172 210.8 60.0
H14 N14 C7 HC7 168.5 201.3
C7 N14 H14 C15 180.0 180.0
H14 N14 C15 O16 181.1 180.0
H14 N14 C15 C17 359.7 360.0
O16 C15 N14 H14 181.1 180.0
N14 C15 O16 C17 178.5 180.0
O16 C15 C17 C5 269.3 0.1
O16 C15 C17 H171 151.6 120.0
O16 C15 C17 H172 29.4 240.0
C17 C15 N14 H14 359.7 360.0
N14 C15 C17 O16 181.4 180.0
C5 C17 C15 H171 117.7 240.0
C5 C17 C15 H172 240.0 120.1
C15 C17 C5 C9 180.6 180.0
C15 C17 C5 HC51 62.8 300.0
C15 C17 C5 HC52 300.6 60.0
H171 C17 C15 H172 122.3 240.0
C15 C17 C5 H171 242.3 120.0
C15 C17 C5 H172 120.0 239.9
H171 C17 C5 H172 237.7 120.0
C9 C5 C17 HC51 117.8 240.0
C9 C5 C17 HC52 240.0 120.0
C17 C5 C9 C11 61.4 180.0
C17 C5 C9 HC91 304.5 299.9
C17 C5 C9 HC92 181.3 60.0
HC51 C5 C17 HC52 122.2 240.0
C15 C17 H171 C5 122.9 240.0
C15 C17 H171 H172 241.5 120.0
C5 C17 H171 H172 118.5 240.0
H171 C17 C5 C9 298.3 60.0
H171 C17 C5 HC51 180.5 180.0
H171 C17 C5 HC52 58.3 300.0
C15 C17 H172 C5 235.7 120.0
C15 C17 H172 H171 117.9 240.0
C5 C17 H172 H171 242.1 120.0
H172 C17 C5 C9 60.6 300.1
H172 C17 C5 HC51 302.8 60.0
H172 C17 C5 HC52 180.6 180.1
C13 O3 C1 O2 276.2 5.0
O3 C1 O2 C 180.7 180.0
O2 C1 C HC1 125.6 85.1
O2 C1 C HC2 5.5 205.0
O2 C1 C HC3 245.6 325.0
C1 O3 C13 H131 299.7 305.0
C1 O3 C13 H132 60.6 65.0
O2 C1 O3 C 179.4 180.0
O3 C1 C HC1 305.0 265.0
O3 C1 C HC2 184.9 25.0
O3 C1 C HC3 65.0 145.0
O2 C1 C O3 180.6 180.0
HC1 C C1 HC2 120.0 240.0
HC1 C C1 HC3 240.0 120.0
HC2 C C1 HC3 120.0 240.0
C1 C HC1 HC2 240.0 120.0
C1 C HC1 HC3 120.0 239.9
HC2 C HC1 HC3 240.0 120.0
C1 C HC2 HC1 120.0 240.0
C1 C HC2 HC3 240.0 120.0
HC1 C HC2 HC3 120.0 240.0
C1 C HC3 HC1 240.0 120.0
C1 C HC3 HC2 120.0 240.0
HC1 C HC3 HC2 240.0 120.0
C9 C5 C17 H171 298.3 60.0
C9 C5 C17 H172 60.6 300.1
C17 C5 C9 HC51 242.2 119.9
C17 C5 C9 HC52 120.0 240.0
HC51 C5 C9 HC52 237.8 120.1
C11 C9 C5 HC91 116.9 240.1
C11 C9 C5 HC92 240.0 120.0
C5 C9 C11 O 180.3 179.9
C5 C9 C11 O1 0.6 360.0
HC91 C9 C5 HC92 123.2 240.0
HC51 C5 C17 H171 180.5 180.0
HC51 C5 C17 H172 302.8 60.0
C17 C5 HC51 C9 122.8 240.0
C17 C5 HC51 HC52 241.4 120.0
C9 C5 HC51 HC52 118.6 239.9
HC51 C5 C9 C11 179.1 60.1
HC51 C5 C9 HC91 62.3 180.0
HC51 C5 C9 HC92 299.1 300.0
HC52 C5 C17 H171 58.3 300.0
HC52 C5 C17 H172 180.6 180.1
C17 C5 HC52 C9 235.9 120.0
C17 C5 HC52 HC51 117.9 240.0
C9 C5 HC52 HC51 242.0 120.1
HC52 C5 C9 C11 301.3 300.0
HC52 C5 C9 HC91 184.5 59.9
HC52 C5 C9 HC92 61.3 180.0
C11 C9 C5 HC51 179.1 60.1
C11 C9 C5 HC52 301.3 300.0
C5 C9 C11 HC91 243.1 120.0
C5 C9 C11 HC92 120.0 239.9
HC91 C9 C11 HC92 236.8 119.9
O C11 C9 O1 179.7 180.0
C9 C11 O HO 180.3 180.0
HC91 C9 C5 HC51 62.3 180.0
HC91 C9 C5 HC52 184.5 59.9
C5 C9 HC91 C11 123.9 240.0
C5 C9 HC91 HC92 241.9 120.1
C11 C9 HC91 HC92 118.1 240.1
HC91 C9 C11 O 297.2 59.9
HC91 C9 C11 O1 117.5 240.0
HC92 C9 C5 HC51 299.1 300.0
HC92 C9 C5 HC52 61.3 180.0
C5 C9 HC92 C11 234.4 120.0
C5 C9 HC92 HC91 117.2 239.9
C11 C9 HC92 HC91 242.8 119.9
HC92 C9 C11 O 60.3 300.0
HC92 C9 C11 O1 240.7 120.1
O C11 C9 HC91 297.2 59.9
O C11 C9 HC92 60.3 300.0
C9 C11 O O1 180.3 180.0
O1 C11 C9 HC91 117.5 240.0
O1 C11 C9 HC92 240.7 120.1
C9 C11 O1 O 179.7 180.0
O1 C11 O HO 360.0 359.9
HO O C11 O1 360.0 359.9
C4 C10 O4 O5 177.8 179.9
C4 C10 O5 O4 182.2 180.1
O5 C10 O4 HO4 0.0 5.1
HO4 O4 C10 O5 0.0 5.1