PDB Chemical Component CEF

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CEF

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
S1	C1	1.785	1.823
S1	C6	1.808	1.817
C1	C2	1.421	1.516
C1	H1	1.100	1.091
C1	H2	1.100	1.090
C2	C3	1.343	1.329
C2	C4	1.496	1.468
C3	H3	1.080	1.080
C3	H4	1.080	1.080
C4	C5	1.582	1.487
C4	N1	1.355	1.275
C5	O1	1.254	1.213
C5	O2	1.255	1.346
O2	H5	0.950	0.967
N1	C6	1.479	1.455
C6	C7	1.607	1.529
C6	H6	1.100	1.090
C7	C8	1.517	1.508
C7	N2	1.457	1.465
C7	H7	1.100	1.090
C8	O3	1.234	1.208
C8	H8	1.080	1.080
N2	C9	1.328	1.348
N2	H9	1.000	0.970
C9	O4	1.233	1.215
C9	C10	1.428	1.483
C10	N3	1.332	1.303
C10	C12	1.481	1.478
N3	O5	1.439	1.416
O5	C11	1.409	1.429
C11	H10	1.100	1.090
C11	H11	1.101	1.090
C11	H12	1.100	1.090
C12	C13	1.430	1.348
C12	N5	1.371	1.333
C13	S2	1.674	1.762
C13	H13	1.080	1.080
S2	C14	1.675	1.760
C14	N4	1.402	1.385
C14	N5	1.331	1.297
N4	H14	1.000	0.970
N4	H15	1.000	0.971

Bond Angles for CEF

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	S1	C6	96.3	101.4
S1	C1	C2	117.4	106.7
S1	C1	H1	107.5	110.0
S1	C1	H2	107.5	110.0
S1	C6	N1	117.2	110.3
S1	C6	C7	112.7	109.3
S1	C6	H6	104.1	109.3
C2	C1	H1	107.5	110.0
C2	C1	H2	107.4	110.0
C1	C2	C3	121.2	120.3
C1	C2	C4	120.3	119.3
H1	C1	H2	109.5	110.1
C3	C2	C4	118.4	120.4
C2	C3	H3	120.0	120.0
C2	C3	H4	120.0	120.0
C2	C4	C5	125.0	116.8
C2	C4	N1	117.6	126.3
H3	C3	H4	120.0	120.0
C5	C4	N1	117.0	116.9
C4	C5	O1	117.6	120.0
C4	C5	O2	119.3	120.0
C4	N1	C6	125.9	127.7
O1	C5	O2	123.1	120.0
C5	O2	H5	109.5	117.0
N1	C6	C7	108.8	109.3
N1	C6	H6	107.3	109.3
C7	C6	H6	105.9	109.2
C6	C7	C8	107.6	109.4
C6	C7	N2	111.1	109.5
C6	C7	H7	107.7	109.5
C8	C7	N2	111.7	109.5
C8	C7	H7	108.8	109.5
C7	C8	O3	121.2	120.0
C7	C8	H8	119.4	120.0
N2	C7	H7	109.6	109.5
C7	N2	C9	121.3	120.0
C7	N2	H9	119.3	120.0
O3	C8	H8	119.4	120.0
C9	N2	H9	119.4	120.0
N2	C9	O4	122.0	120.0
N2	C9	C10	112.2	120.0
O4	C9	C10	125.8	120.0
C9	C10	N3	123.9	119.9
C9	C10	C12	123.7	120.0
N3	C10	C12	112.3	120.1
C10	N3	O5	111.6	120.0
C10	C12	C13	124.3	122.4
C10	C12	N5	129.7	122.4
N3	O5	C11	107.1	114.0
O5	C11	H10	109.5	109.5
O5	C11	H11	109.5	109.5
O5	C11	H12	109.5	109.5
H10	C11	H11	109.5	109.5
H10	C11	H12	109.5	109.5
H11	C11	H12	109.5	109.5
C13	C12	N5	105.9	115.2
C12	C13	S2	112.5	108.3
C12	C13	H13	123.7	125.8
C12	N5	C14	117.1	116.8
S2	C13	H13	123.7	125.9
C13	S2	C14	91.2	90.1
S2	C14	N4	124.6	125.2
S2	C14	N5	111.2	109.6
N4	C14	N5	124.2	125.2
C14	N4	H14	109.5	120.0
C14	N4	H15	109.5	120.0
H14	N4	H15	109.4	120.0

Torsion Angles for CEF

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C1	S1	C6	N1	32.4	47.2
C1	S1	C6	C7	159.8	167.4
C1	S1	C6	H6	274.1	287.0
C2	C1	S1	H1	238.9	240.7
C2	C1	S1	H2	121.1	119.3
S1	C1	C2	C3	214.3	222.0
S1	C1	C2	C4	36.6	42.0
H1	C1	S1	H2	242.3	238.6
C6	S1	C1	C2	308.0	304.5
C6	S1	C1	H1	69.1	63.8
C6	S1	C1	H2	186.8	185.2
C4	N1	C6	S1	4.6	336.9
N1	C6	S1	C7	232.6	239.7
N1	C6	S1	H6	118.3	120.2
C7	C6	S1	H6	245.7	240.5
S1	C6	C7	C8	183.1	65.0
S1	C6	C7	N2	305.7	185.0
S1	C6	C7	H7	65.9	305.0
C2	C1	S1	C6	308.0	304.5
S1	C1	C2	H1	121.1	119.2
S1	C1	C2	H2	238.9	240.7
H1	C1	C2	H2	117.7	121.4
C3	C2	C1	C4	177.7	180.0
C1	C2	C3	H3	182.3	350.8
C1	C2	C3	H4	2.3	170.9
C1	C2	C4	C5	182.7	167.5
C1	C2	C4	N1	9.5	347.6
H1	C1	S1	C6	69.1	63.8
S1	C1	H1	C2	232.9	242.8
S1	C1	H1	H2	116.4	121.4
C2	C1	H1	H2	243.6	238.6
H1	C1	C2	C3	93.2	102.8
H1	C1	C2	C4	275.5	282.7
H2	C1	S1	C6	186.8	185.2
S1	C1	H2	C2	127.2	117.3
S1	C1	H2	H1	243.6	238.6
C2	C1	H2	H1	116.4	121.4
H2	C1	C2	C3	335.4	341.3
H2	C1	C2	C4	157.8	161.3
C3	C2	C1	H1	93.2	102.8
C3	C2	C1	H2	335.4	341.3
C1	C2	C3	C4	182.3	180.0
C3	C2	C4	C5	5.0	347.5
C3	C2	C4	N1	191.7	167.5
H3	C3	C2	H4	180.0	179.9
C4	C2	C1	H1	275.5	282.7
C4	C2	C1	H2	157.8	161.3
C1	C2	C4	C3	177.7	180.0
C4	C2	C3	H3	360.0	170.8
C4	C2	C3	H4	180.0	351.0
C5	C4	C2	N1	173.3	180.0
C2	C4	C5	O1	238.6	353.0
C2	C4	C5	O2	59.1	173.0
C2	C4	N1	C6	328.5	1.0
H3	C3	C2	C4	360.0	170.8
C2	C3	H3	H4	180.0	180.1
H4	C3	C2	C4	180.0	351.0
C2	C3	H4	H3	180.0	179.9
C2	C4	C5	N1	186.7	180.0
C5	C4	N1	C6	154.7	181.1
O1	C5	C4	O2	179.5	180.0
C4	C5	O2	H5	179.5	180.1
S1	C6	N1	C4	4.6	336.9
C2	C4	N1	C5	173.8	180.0
N1	C4	C5	O1	51.9	173.0
N1	C4	C5	O2	232.4	353.0
C4	N1	C6	C7	235.4	216.6
C4	N1	C6	H6	121.2	97.1
O1	C5	C4	N1	51.9	173.0
C4	C5	O1	O2	180.5	180.0
O1	C5	O2	H5	0.0	0.0
O2	C5	C4	N1	232.4	353.0
C4	C5	O2	O1	179.5	180.0
S1	C6	N1	C7	129.3	120.3
S1	C6	N1	H6	243.4	239.8
C7	C6	N1	H6	114.2	119.5
N1	C6	C7	C8	314.8	185.9
N1	C6	C7	N2	77.4	305.9
N1	C6	C7	H7	197.6	65.9
S1	C6	C7	N1	228.3	239.1
S1	C6	C7	H6	113.2	119.5
N1	C6	C7	H6	244.9	240.4
C8	C7	C6	N2	237.4	240.0
C8	C7	C6	H7	117.2	120.0
C6	C7	C8	O3	127.4	120.0
C6	C7	C8	H8	307.4	300.0
N2	C7	C6	H7	239.8	240.0
C6	C7	N2	C9	100.1	155.0
C6	C7	N2	H9	280.1	335.0
S1	C6	H6	N1	124.9	120.9
S1	C6	H6	C7	241.0	240.4
N1	C6	H6	C7	116.1	119.6
H6	C6	C7	C8	69.9	305.4
H6	C6	C7	N2	192.5	65.4
H6	C6	C7	H7	312.7	185.5
C8	C7	C6	H6	69.9	305.4
C6	C7	C8	N2	122.3	120.0
C6	C7	C8	H7	243.5	240.0
N2	C7	C8	H7	121.2	120.0
C8	C7	N2	C9	220.3	275.0
C8	C7	N2	H9	40.3	95.0
O3	C8	C7	H8	180.0	180.0
N2	C7	C6	H6	192.5	65.4
C6	C7	N2	C8	239.8	240.0
C6	C7	N2	H7	119.0	120.0
C8	C7	N2	H7	239.2	240.0
N2	C7	C8	O3	5.1	0.0
N2	C7	C8	H8	185.1	180.0
C9	N2	C7	H9	180.0	180.1
C7	N2	C9	O4	12.8	4.7
C7	N2	C9	C10	191.4	184.8
H7	C7	C6	H6	312.7	185.5
C6	C7	H7	C8	116.4	120.0
C6	C7	H7	N2	238.9	240.0
C8	C7	H7	N2	122.5	120.0
H7	C7	C8	O3	243.9	240.0
H7	C7	C8	H8	63.9	60.0
H7	C7	N2	C9	341.1	35.0
H7	C7	N2	H9	161.1	214.9
O3	C8	C7	N2	5.1	0.0
O3	C8	C7	H7	243.9	240.0
C7	C8	O3	H8	180.0	180.0
H8	C8	C7	N2	185.1	180.0
H8	C8	C7	H7	63.9	60.0
C7	C8	H8	O3	180.0	180.0
C9	N2	C7	H7	341.1	35.0
C7	N2	C9	H9	180.0	179.9
O4	C9	N2	C10	181.4	179.9
N2	C9	C10	N3	231.9	174.3
N2	C9	C10	C12	53.6	354.3
H9	N2	C7	H7	161.1	214.9
C7	N2	H9	C9	180.0	180.1
H9	N2	C9	O4	192.8	184.8
H9	N2	C9	C10	11.4	4.8
O4	C9	N2	H9	192.8	184.8
N2	C9	O4	C10	178.4	180.1
O4	C9	C10	N3	50.5	354.3
O4	C9	C10	C12	232.2	174.3
C10	C9	N2	H9	11.4	4.8
N2	C9	C10	O4	181.5	179.9
N3	C10	C9	C12	178.3	180.0
C9	C10	N3	O5	25.6	5.5
C9	C10	C12	C13	27.4	186.5
C9	C10	C12	N5	203.4	6.1
C9	C10	N3	C12	181.5	180.0
N3	C10	C12	C13	209.0	6.5
N3	C10	C12	N5	24.9	186.1
C10	N3	O5	C11	167.8	180.0
C9	C10	C12	N3	178.5	180.0
C12	C10	N3	O5	204.1	185.5
C13	C12	C10	N5	184.0	180.3
C10	C12	C13	S2	192.3	180.0
C10	C12	C13	H13	12.4	359.9
C10	C12	N5	C14	171.0	179.8
O5	N3	C10	C12	204.1	185.5
N3	O5	C11	H10	180.0	300.0
N3	O5	C11	H11	300.0	60.0
N3	O5	C11	H12	60.0	180.0
H10	C11	O5	H11	240.0	240.0
H10	C11	O5	H12	120.0	120.0
H11	C11	O5	H12	240.0	240.0
O5	C11	H10	H11	120.0	120.0
O5	C11	H10	H12	240.0	240.0
H11	C11	H10	H12	120.0	120.0
O5	C11	H11	H10	240.0	240.0
O5	C11	H11	H12	120.0	120.0
H10	C11	H11	H12	240.0	240.0
O5	C11	H12	H10	120.0	120.0
O5	C11	H12	H11	240.0	240.0
H10	C11	H12	H11	120.0	120.0
C10	C12	C13	N5	176.8	179.7
C13	C12	N5	C14	347.6	359.5
S2	C13	C12	H13	180.0	180.1
C12	C13	S2	C14	348.0	360.0
C10	C12	N5	C13	183.5	180.3
N5	C12	C13	S2	15.5	0.3
N5	C12	C13	H13	195.6	180.2
S2	C14	N5	C12	4.1	0.5
N4	C14	N5	C12	184.8	180.2
S2	C13	C12	N5	15.5	0.3
C12	C13	S2	H13	180.0	179.9
C13	S2	C14	N4	184.1	180.0
C13	S2	C14	N5	4.7	359.7
H13	C13	C12	N5	195.6	180.2
C12	C13	H13	S2	180.0	180.1
H13	C13	S2	C14	167.9	180.1
C12	N5	C14	S2	4.1	0.5
C14	S2	C13	H13	167.9	180.1
N4	C14	S2	N5	179.4	180.3
S2	C14	N4	H14	0.0	0.0
S2	C14	N4	H15	120.0	180.0
C12	N5	C14	N4	184.8	180.2
S2	C14	N4	N5	180.7	179.7
H14	N4	C14	H15	240.0	180.0
S2	C14	N5	N4	179.4	180.3
N5	C14	N4	H14	179.3	180.3
N5	C14	N4	H15	299.3	0.3
H14	N4	C14	N5	179.3	180.3
C14	N4	H14	H15	120.0	180.0
H15	N4	C14	N5	299.3	0.3
C14	N4	H15	H14	240.0	180.0