PDB Chemical Component CEB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CEB
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C2 |
1.309 |
1.323 |
N1 |
C6 |
1.362 |
1.330 |
C2 |
CL2 |
1.746 |
1.736 |
C2 |
N3 |
1.319 |
1.322 |
N3 |
C4 |
1.366 |
1.330 |
C4 |
N5 |
1.330 |
1.328 |
C4 |
N7 |
1.341 |
1.381 |
N5 |
C6 |
1.339 |
1.328 |
C6 |
N13 |
1.349 |
1.380 |
N7 |
C8 |
1.456 |
1.464 |
N7 |
HN7 |
1.020 |
0.970 |
C8 |
C9 |
1.497 |
1.471 |
C8 |
C10 |
1.532 |
1.530 |
C8 |
C12 |
1.545 |
1.529 |
C9 |
N9 |
1.166 |
1.136 |
C10 |
C11 |
1.512 |
1.530 |
C10 |
H101 |
1.114 |
1.090 |
C10 |
H102 |
1.115 |
1.089 |
C11 |
H111 |
1.115 |
1.090 |
C11 |
H112 |
1.116 |
1.089 |
C11 |
H113 |
1.115 |
1.091 |
C12 |
H121 |
1.116 |
1.090 |
C12 |
H122 |
1.116 |
1.090 |
C12 |
H123 |
1.115 |
1.090 |
N13 |
C14 |
1.464 |
1.465 |
N13 |
HN3 |
1.020 |
0.970 |
C14 |
C15 |
1.492 |
1.530 |
C14 |
H141 |
1.115 |
1.089 |
C14 |
H142 |
1.115 |
1.089 |
C15 |
H151 |
1.115 |
1.090 |
C15 |
H152 |
1.114 |
1.091 |
C15 |
H153 |
1.115 |
1.089 |
Bond Angles for CEB
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C6 |
111.6 |
120.1 |
N1 |
C2 |
CL2 |
114.2 |
119.9 |
N1 |
C2 |
N3 |
131.1 |
120.1 |
N1 |
C6 |
N5 |
125.5 |
119.9 |
N1 |
C6 |
N13 |
115.3 |
120.0 |
CL2 |
C2 |
N3 |
114.7 |
119.9 |
C2 |
N3 |
C4 |
111.4 |
120.0 |
N3 |
C4 |
N5 |
125.5 |
120.0 |
N3 |
C4 |
N7 |
116.5 |
120.0 |
N5 |
C4 |
N7 |
118.0 |
120.0 |
C4 |
N5 |
C6 |
114.9 |
119.8 |
C4 |
N7 |
C8 |
127.1 |
120.0 |
C4 |
N7 |
HN7 |
106.0 |
120.0 |
N5 |
C6 |
N13 |
119.2 |
120.0 |
C6 |
N13 |
C14 |
125.0 |
120.0 |
C6 |
N13 |
HN3 |
106.7 |
120.0 |
C8 |
N7 |
HN7 |
106.0 |
120.0 |
N7 |
C8 |
C9 |
113.3 |
109.5 |
N7 |
C8 |
C10 |
109.7 |
109.5 |
N7 |
C8 |
C12 |
109.1 |
109.5 |
C9 |
C8 |
C10 |
101.7 |
109.4 |
C9 |
C8 |
C12 |
108.3 |
109.5 |
C8 |
C9 |
N9 |
178.2 |
179.9 |
C10 |
C8 |
C12 |
114.7 |
109.5 |
C8 |
C10 |
C11 |
115.7 |
109.5 |
C8 |
C10 |
H101 |
110.0 |
109.5 |
C8 |
C10 |
H102 |
109.9 |
109.5 |
C8 |
C12 |
H121 |
109.1 |
109.5 |
C8 |
C12 |
H122 |
112.4 |
109.5 |
C8 |
C12 |
H123 |
112.4 |
109.5 |
C11 |
C10 |
H101 |
109.9 |
109.5 |
C11 |
C10 |
H102 |
109.9 |
109.5 |
C10 |
C11 |
H111 |
115.7 |
109.5 |
C10 |
C11 |
H112 |
110.0 |
109.5 |
C10 |
C11 |
H113 |
110.0 |
109.5 |
H101 |
C10 |
H102 |
100.3 |
109.5 |
H111 |
C11 |
H112 |
109.9 |
109.5 |
H111 |
C11 |
H113 |
109.9 |
109.5 |
H112 |
C11 |
H113 |
100.3 |
109.4 |
H121 |
C12 |
H122 |
112.3 |
109.4 |
H121 |
C12 |
H123 |
112.3 |
109.5 |
H122 |
C12 |
H123 |
98.1 |
109.5 |
C14 |
N13 |
HN3 |
106.7 |
120.0 |
N13 |
C14 |
C15 |
111.2 |
109.5 |
N13 |
C14 |
H141 |
111.5 |
109.4 |
N13 |
C14 |
H142 |
111.5 |
109.5 |
C15 |
C14 |
H141 |
111.6 |
109.4 |
C15 |
C14 |
H142 |
111.6 |
109.5 |
C14 |
C15 |
H151 |
111.2 |
109.5 |
C14 |
C15 |
H152 |
111.5 |
109.5 |
C14 |
C15 |
H153 |
111.5 |
109.5 |
H141 |
C14 |
H142 |
98.8 |
109.5 |
H151 |
C15 |
H152 |
111.6 |
109.4 |
H151 |
C15 |
H153 |
111.6 |
109.5 |
H152 |
C15 |
H153 |
98.8 |
109.4 |
Torsion Angles for CEB
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C6 |
N5 |
359.8 |
0.3 |
C2 |
N1 |
C6 |
N13 |
179.8 |
180.0 |
CL2 |
C2 |
N1 |
N3 |
179.2 |
180.1 |
N1 |
C2 |
N3 |
C4 |
0.3 |
0.1 |
C6 |
N1 |
C2 |
CL2 |
178.9 |
180.0 |
C6 |
N1 |
C2 |
N3 |
359.7 |
359.9 |
C4 |
N5 |
C6 |
N1 |
0.6 |
359.5 |
N5 |
C6 |
N1 |
N13 |
180.1 |
180.3 |
N1 |
C6 |
N13 |
C14 |
0.1 |
0.0 |
N1 |
C6 |
N13 |
HN3 |
234.8 |
179.9 |
CL2 |
C2 |
N1 |
C6 |
178.9 |
180.0 |
N1 |
C2 |
CL2 |
N3 |
180.6 |
179.9 |
CL2 |
C2 |
N3 |
C4 |
181.1 |
180.0 |
N3 |
C2 |
N1 |
C6 |
359.7 |
359.9 |
N1 |
C2 |
N3 |
CL2 |
179.2 |
180.1 |
C2 |
N3 |
C4 |
N5 |
0.2 |
359.6 |
C2 |
N3 |
C4 |
N7 |
180.7 |
180.0 |
N5 |
C4 |
N3 |
N7 |
179.5 |
179.6 |
N3 |
C4 |
N5 |
C6 |
359.4 |
0.6 |
N3 |
C4 |
N7 |
C8 |
0.7 |
359.9 |
N3 |
C4 |
N7 |
HN7 |
235.5 |
179.9 |
N1 |
C6 |
N5 |
C4 |
0.6 |
359.5 |
N3 |
C4 |
N5 |
N7 |
180.5 |
180.4 |
N5 |
C4 |
N7 |
C8 |
181.2 |
180.3 |
N5 |
C4 |
N7 |
HN7 |
56.0 |
0.3 |
C4 |
N5 |
C6 |
N13 |
180.6 |
179.7 |
N3 |
C4 |
N7 |
N5 |
179.5 |
179.6 |
N7 |
C4 |
N5 |
C6 |
178.9 |
180.2 |
C8 |
N7 |
C4 |
HN7 |
125.2 |
180.0 |
C4 |
N7 |
C8 |
C9 |
297.3 |
300.0 |
C4 |
N7 |
C8 |
C10 |
184.4 |
180.0 |
C4 |
N7 |
C8 |
C12 |
58.0 |
60.0 |
N1 |
C6 |
N5 |
N13 |
179.9 |
179.7 |
C6 |
N5 |
C4 |
N7 |
178.9 |
180.2 |
N5 |
C6 |
N13 |
C14 |
180.0 |
179.7 |
N5 |
C6 |
N13 |
HN3 |
54.8 |
359.7 |
N1 |
C6 |
N13 |
N5 |
180.1 |
180.3 |
C14 |
N13 |
C6 |
HN3 |
125.2 |
180.1 |
C6 |
N13 |
C14 |
C15 |
202.7 |
180.0 |
C6 |
N13 |
C14 |
H141 |
328.0 |
60.0 |
C6 |
N13 |
C14 |
H142 |
77.4 |
300.0 |
C4 |
N7 |
C8 |
HN7 |
234.8 |
180.0 |
C9 |
C8 |
N7 |
C10 |
112.9 |
120.0 |
C9 |
C8 |
N7 |
C12 |
239.3 |
240.0 |
N7 |
C8 |
C9 |
N9 |
250.9 |
349.8 |
C10 |
C8 |
N7 |
C12 |
126.4 |
120.0 |
N7 |
C8 |
C10 |
C11 |
229.4 |
180.0 |
N7 |
C8 |
C10 |
H101 |
354.7 |
300.0 |
N7 |
C8 |
C10 |
H102 |
104.2 |
60.0 |
N7 |
C8 |
C12 |
H121 |
180.0 |
60.0 |
N7 |
C8 |
C12 |
H122 |
305.2 |
180.0 |
N7 |
C8 |
C12 |
H123 |
54.8 |
300.0 |
C4 |
N7 |
HN7 |
C8 |
137.3 |
180.0 |
HN7 |
N7 |
C8 |
C9 |
62.5 |
120.0 |
HN7 |
N7 |
C8 |
C10 |
309.6 |
0.0 |
HN7 |
N7 |
C8 |
C12 |
183.2 |
240.0 |
C9 |
C8 |
N7 |
HN7 |
62.5 |
120.0 |
N7 |
C8 |
C9 |
C10 |
242.3 |
240.0 |
N7 |
C8 |
C9 |
C12 |
121.1 |
120.0 |
C10 |
C8 |
C9 |
C12 |
238.8 |
240.0 |
C9 |
C8 |
C10 |
C11 |
109.2 |
60.0 |
C9 |
C8 |
C10 |
H101 |
234.5 |
180.0 |
C9 |
C8 |
C10 |
H102 |
344.0 |
300.0 |
C9 |
C8 |
C12 |
H121 |
303.7 |
180.0 |
C9 |
C8 |
C12 |
H122 |
68.9 |
300.0 |
C9 |
C8 |
C12 |
H123 |
178.4 |
60.1 |
C10 |
C8 |
N7 |
HN7 |
309.6 |
0.0 |
N7 |
C8 |
C10 |
C9 |
120.2 |
120.0 |
N7 |
C8 |
C10 |
C12 |
236.8 |
240.0 |
C9 |
C8 |
C10 |
C12 |
116.6 |
120.0 |
C10 |
C8 |
C9 |
N9 |
8.6 |
109.8 |
C10 |
C8 |
C12 |
H121 |
56.5 |
300.0 |
C10 |
C8 |
C12 |
H122 |
181.7 |
60.0 |
C10 |
C8 |
C12 |
H123 |
291.2 |
180.0 |
C11 |
C10 |
C8 |
H101 |
234.8 |
240.0 |
C11 |
C10 |
C8 |
H102 |
125.2 |
120.0 |
C8 |
C10 |
C11 |
H111 |
180.0 |
180.0 |
C8 |
C10 |
C11 |
H112 |
305.2 |
300.0 |
C8 |
C10 |
C11 |
H113 |
54.7 |
60.0 |
H101 |
C10 |
C8 |
H102 |
250.4 |
240.0 |
C12 |
C8 |
N7 |
HN7 |
183.2 |
240.0 |
N7 |
C8 |
C12 |
C9 |
236.3 |
239.9 |
N7 |
C8 |
C12 |
C10 |
123.5 |
120.0 |
C9 |
C8 |
C12 |
C10 |
247.2 |
240.1 |
C12 |
C8 |
C9 |
N9 |
129.8 |
229.7 |
C12 |
C8 |
C10 |
C11 |
352.6 |
300.0 |
C12 |
C8 |
C10 |
H101 |
117.8 |
60.0 |
C12 |
C8 |
C10 |
H102 |
227.4 |
180.0 |
H121 |
C12 |
C8 |
H122 |
234.8 |
240.0 |
H121 |
C12 |
C8 |
H123 |
125.3 |
120.0 |
H122 |
C12 |
C8 |
H123 |
250.5 |
240.0 |
N9 |
C9 |
C8 |
C10 |
8.6 |
109.8 |
N9 |
C9 |
C8 |
C12 |
129.8 |
229.7 |
C11 |
C10 |
C8 |
C12 |
352.6 |
300.0 |
C8 |
C10 |
C11 |
H101 |
125.3 |
120.0 |
C8 |
C10 |
C11 |
H102 |
234.8 |
240.0 |
H101 |
C10 |
C11 |
H102 |
109.5 |
120.0 |
H111 |
C11 |
C10 |
H112 |
234.8 |
240.0 |
H111 |
C11 |
C10 |
H113 |
125.3 |
120.0 |
H112 |
C11 |
C10 |
H113 |
250.5 |
240.0 |
H101 |
C10 |
C8 |
C12 |
117.8 |
60.0 |
C8 |
C10 |
H101 |
C11 |
231.5 |
240.0 |
C8 |
C10 |
H101 |
H102 |
115.8 |
120.0 |
C11 |
C10 |
H101 |
H102 |
244.3 |
240.0 |
H101 |
C10 |
C11 |
H111 |
54.7 |
60.0 |
H101 |
C10 |
C11 |
H112 |
180.0 |
180.0 |
H101 |
C10 |
C11 |
H113 |
289.5 |
300.0 |
H102 |
C10 |
C8 |
C12 |
227.4 |
180.0 |
C8 |
C10 |
H102 |
C11 |
128.4 |
120.0 |
C8 |
C10 |
H102 |
H101 |
244.2 |
240.0 |
C11 |
C10 |
H102 |
H101 |
115.8 |
120.0 |
H102 |
C10 |
C11 |
H111 |
305.2 |
300.0 |
H102 |
C10 |
C11 |
H112 |
70.5 |
60.0 |
H102 |
C10 |
C11 |
H113 |
179.9 |
180.0 |
H111 |
C11 |
C10 |
H101 |
54.7 |
60.0 |
H111 |
C11 |
C10 |
H102 |
305.2 |
300.0 |
C10 |
C11 |
H111 |
H112 |
125.3 |
120.0 |
C10 |
C11 |
H111 |
H113 |
234.7 |
240.0 |
H112 |
C11 |
H111 |
H113 |
109.5 |
120.0 |
H112 |
C11 |
C10 |
H101 |
180.0 |
180.0 |
H112 |
C11 |
C10 |
H102 |
70.5 |
60.0 |
C10 |
C11 |
H112 |
H111 |
231.5 |
240.0 |
C10 |
C11 |
H112 |
H113 |
115.8 |
120.0 |
H111 |
C11 |
H112 |
H113 |
244.3 |
240.0 |
H113 |
C11 |
C10 |
H101 |
289.5 |
300.0 |
H113 |
C11 |
C10 |
H102 |
179.9 |
180.0 |
C10 |
C11 |
H113 |
H111 |
128.5 |
120.0 |
C10 |
C11 |
H113 |
H112 |
244.2 |
240.0 |
H111 |
C11 |
H113 |
H112 |
115.7 |
120.0 |
C8 |
C12 |
H121 |
H122 |
125.3 |
120.0 |
C8 |
C12 |
H121 |
H123 |
234.7 |
240.0 |
H122 |
C12 |
H121 |
H123 |
109.4 |
120.0 |
C8 |
C12 |
H122 |
H121 |
236.6 |
240.0 |
C8 |
C12 |
H122 |
H123 |
118.4 |
120.0 |
H121 |
C12 |
H122 |
H123 |
241.8 |
240.0 |
C8 |
C12 |
H123 |
H121 |
123.5 |
120.0 |
C8 |
C12 |
H123 |
H122 |
241.7 |
240.0 |
H121 |
C12 |
H123 |
H122 |
118.2 |
119.9 |
C6 |
N13 |
C14 |
HN3 |
234.8 |
179.9 |
C15 |
C14 |
N13 |
H141 |
234.7 |
119.9 |
C15 |
C14 |
N13 |
H142 |
125.3 |
240.0 |
N13 |
C14 |
C15 |
H151 |
180.0 |
180.0 |
N13 |
C14 |
C15 |
H152 |
305.3 |
300.0 |
N13 |
C14 |
C15 |
H153 |
54.8 |
60.0 |
H141 |
C14 |
N13 |
H142 |
250.6 |
120.0 |
C6 |
N13 |
HN3 |
C14 |
135.7 |
180.1 |
HN3 |
N13 |
C14 |
C15 |
327.9 |
0.0 |
HN3 |
N13 |
C14 |
H141 |
93.2 |
240.1 |
HN3 |
N13 |
C14 |
H142 |
202.6 |
120.0 |
C15 |
C14 |
N13 |
HN3 |
327.9 |
0.0 |
N13 |
C14 |
C15 |
H141 |
125.2 |
240.1 |
N13 |
C14 |
C15 |
H142 |
234.7 |
120.0 |
H141 |
C14 |
C15 |
H142 |
109.5 |
239.9 |
H151 |
C15 |
C14 |
H152 |
234.7 |
240.0 |
H151 |
C15 |
C14 |
H153 |
125.2 |
120.0 |
H152 |
C15 |
C14 |
H153 |
250.5 |
240.0 |
H141 |
C14 |
N13 |
HN3 |
93.2 |
240.1 |
N13 |
C14 |
H141 |
C15 |
234.9 |
119.9 |
N13 |
C14 |
H141 |
H142 |
117.4 |
240.0 |
C15 |
C14 |
H141 |
H142 |
242.5 |
120.0 |
H141 |
C14 |
C15 |
H151 |
54.8 |
300.0 |
H141 |
C14 |
C15 |
H152 |
180.0 |
59.9 |
H141 |
C14 |
C15 |
H153 |
289.5 |
179.9 |
H142 |
C14 |
N13 |
HN3 |
202.6 |
120.0 |
N13 |
C14 |
H142 |
C15 |
125.1 |
240.0 |
N13 |
C14 |
H142 |
H141 |
242.6 |
120.0 |
C15 |
C14 |
H142 |
H141 |
117.5 |
240.0 |
H142 |
C14 |
C15 |
H151 |
305.3 |
60.0 |
H142 |
C14 |
C15 |
H152 |
70.5 |
180.0 |
H142 |
C14 |
C15 |
H153 |
180.0 |
300.0 |
H151 |
C15 |
C14 |
H141 |
54.8 |
300.0 |
H151 |
C15 |
C14 |
H142 |
305.3 |
60.0 |
C14 |
C15 |
H151 |
H152 |
125.2 |
120.0 |
C14 |
C15 |
H151 |
H153 |
234.8 |
240.0 |
H152 |
C15 |
H151 |
H153 |
109.6 |
120.0 |
H152 |
C15 |
C14 |
H141 |
180.0 |
59.9 |
H152 |
C15 |
C14 |
H142 |
70.5 |
180.0 |
C14 |
C15 |
H152 |
H151 |
235.0 |
240.0 |
C14 |
C15 |
H152 |
H153 |
117.4 |
120.0 |
H151 |
C15 |
H152 |
H153 |
242.5 |
240.0 |
H153 |
C15 |
C14 |
H141 |
289.5 |
179.9 |
H153 |
C15 |
C14 |
H142 |
180.0 |
300.0 |
C14 |
C15 |
H153 |
H151 |
125.0 |
120.0 |
C14 |
C15 |
H153 |
H152 |
242.6 |
240.0 |
H151 |
C15 |
H153 |
H152 |
117.5 |
120.0 |