PDB Chemical Component CDV
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CDV
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| NT |
CT |
1.355 |
1.347 |
| NT |
HT1 |
1.020 |
0.970 |
| NT |
HT2 |
1.019 |
0.970 |
| CT |
OT |
1.222 |
1.215 |
| CT |
N |
1.371 |
1.348 |
| N |
CA |
1.459 |
1.464 |
| N |
HN1 |
1.020 |
0.970 |
| CA |
CB |
1.546 |
1.530 |
| CA |
C |
1.520 |
1.507 |
| CA |
HA |
1.115 |
1.090 |
| CB |
CG1 |
1.525 |
1.530 |
| CB |
CG2 |
1.533 |
1.528 |
| CB |
HB |
1.116 |
1.090 |
| CG1 |
HG11 |
1.115 |
1.090 |
| CG1 |
HG12 |
1.115 |
1.090 |
| CG1 |
HG13 |
1.114 |
1.090 |
| CG2 |
HG21 |
1.115 |
1.090 |
| CG2 |
HG22 |
1.114 |
1.090 |
| CG2 |
HG23 |
1.115 |
1.090 |
| C |
O |
1.217 |
1.208 |
| C |
OXT |
1.337 |
1.342 |
| OXT |
HXT |
0.951 |
0.967 |
Bond Angles for CDV
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CT |
NT |
HT1 |
119.2 |
120.0 |
| CT |
NT |
HT2 |
108.7 |
120.0 |
| NT |
CT |
OT |
119.2 |
120.0 |
| NT |
CT |
N |
119.7 |
120.0 |
| HT1 |
NT |
HT2 |
108.7 |
120.0 |
| OT |
CT |
N |
121.2 |
120.0 |
| CT |
N |
CA |
122.9 |
120.1 |
| CT |
N |
HN1 |
115.3 |
120.0 |
| CA |
N |
HN1 |
121.8 |
120.0 |
| N |
CA |
CB |
109.1 |
109.5 |
| N |
CA |
C |
108.8 |
109.5 |
| N |
CA |
HA |
110.6 |
109.4 |
| CB |
CA |
C |
110.9 |
109.5 |
| CB |
CA |
HA |
108.5 |
109.5 |
| CA |
CB |
CG1 |
109.8 |
109.4 |
| CA |
CB |
CG2 |
111.4 |
109.5 |
| CA |
CB |
HB |
107.6 |
109.4 |
| C |
CA |
HA |
108.9 |
109.5 |
| CA |
C |
O |
120.7 |
120.0 |
| CA |
C |
OXT |
119.3 |
120.0 |
| CG1 |
CB |
CG2 |
108.2 |
109.5 |
| CG1 |
CB |
HB |
110.7 |
109.4 |
| CB |
CG1 |
HG11 |
109.8 |
109.4 |
| CB |
CG1 |
HG12 |
112.1 |
109.5 |
| CB |
CG1 |
HG13 |
112.0 |
109.4 |
| CG2 |
CB |
HB |
109.1 |
109.5 |
| CB |
CG2 |
HG21 |
111.4 |
109.4 |
| CB |
CG2 |
HG22 |
111.5 |
109.5 |
| CB |
CG2 |
HG23 |
111.5 |
109.5 |
| HG11 |
CG1 |
HG12 |
112.0 |
109.5 |
| HG11 |
CG1 |
HG13 |
112.2 |
109.4 |
| HG12 |
CG1 |
HG13 |
98.4 |
109.6 |
| HG21 |
CG2 |
HG22 |
111.6 |
109.4 |
| HG21 |
CG2 |
HG23 |
111.4 |
109.5 |
| HG22 |
CG2 |
HG23 |
98.9 |
109.5 |
| O |
C |
OXT |
120.0 |
120.0 |
| C |
OXT |
HXT |
119.3 |
119.9 |
Torsion Angles for CDV
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HT1 |
NT |
CT |
HT2 |
125.3 |
180.1 |
| OT |
CT |
NT |
N |
180.3 |
179.9 |
| NT |
CT |
N |
CA |
176.4 |
180.0 |
| NT |
CT |
N |
HN1 |
356.4 |
0.0 |
| CT |
NT |
HT1 |
HT2 |
234.8 |
179.9 |
| HT1 |
NT |
CT |
OT |
180.0 |
0.0 |
| HT1 |
NT |
CT |
N |
359.7 |
180.1 |
| CT |
NT |
HT2 |
HT1 |
131.1 |
180.1 |
| HT2 |
NT |
CT |
OT |
54.7 |
179.9 |
| HT2 |
NT |
CT |
N |
234.4 |
360.0 |
| OT |
CT |
NT |
HT1 |
180.0 |
0.0 |
| OT |
CT |
NT |
HT2 |
54.7 |
179.9 |
| NT |
CT |
OT |
N |
179.7 |
180.1 |
| OT |
CT |
N |
CA |
356.1 |
0.1 |
| OT |
CT |
N |
HN1 |
176.1 |
180.1 |
| N |
CT |
NT |
HT1 |
359.7 |
180.1 |
| N |
CT |
NT |
HT2 |
234.4 |
360.0 |
| NT |
CT |
N |
OT |
180.3 |
179.9 |
| CA |
N |
CT |
HN1 |
180.0 |
180.0 |
| CT |
N |
CA |
CB |
202.3 |
209.9 |
| CT |
N |
CA |
C |
81.2 |
90.0 |
| CT |
N |
CA |
HA |
321.7 |
330.0 |
| CT |
N |
CA |
HN1 |
180.0 |
180.0 |
| CB |
CA |
N |
C |
121.1 |
120.0 |
| CB |
CA |
N |
HA |
240.6 |
240.0 |
| N |
CA |
CB |
CG1 |
63.1 |
180.0 |
| N |
CA |
CB |
CG2 |
183.0 |
300.0 |
| N |
CA |
CB |
HB |
302.6 |
60.0 |
| C |
CA |
N |
HA |
119.6 |
120.0 |
| N |
CA |
C |
O |
40.5 |
210.0 |
| N |
CA |
C |
OXT |
220.1 |
30.0 |
| CT |
N |
HN1 |
CA |
180.0 |
180.0 |
| HN1 |
N |
CA |
CB |
22.3 |
29.9 |
| HN1 |
N |
CA |
C |
261.3 |
269.9 |
| HN1 |
N |
CA |
HA |
141.7 |
149.9 |
| CB |
CA |
N |
HN1 |
22.3 |
29.9 |
| N |
CA |
CB |
C |
240.2 |
240.0 |
| N |
CA |
CB |
HA |
120.7 |
120.0 |
| C |
CA |
CB |
HA |
240.5 |
240.0 |
| CB |
CA |
C |
O |
280.5 |
90.0 |
| CB |
CA |
C |
OXT |
100.1 |
270.0 |
| CG1 |
CB |
CA |
CG2 |
240.1 |
239.9 |
| CG1 |
CB |
CA |
HB |
120.6 |
119.9 |
| CA |
CB |
CG1 |
HG11 |
180.0 |
180.0 |
| CA |
CB |
CG1 |
HG12 |
305.2 |
300.0 |
| CA |
CB |
CG1 |
HG13 |
54.7 |
60.1 |
| CG2 |
CB |
CA |
HB |
240.5 |
240.0 |
| CA |
CB |
CG2 |
HG21 |
179.9 |
300.0 |
| CA |
CB |
CG2 |
HG22 |
305.3 |
59.9 |
| CA |
CB |
CG2 |
HG23 |
54.8 |
180.0 |
| C |
CA |
N |
HN1 |
261.3 |
269.9 |
| N |
CA |
C |
CB |
120.0 |
120.0 |
| N |
CA |
C |
HA |
239.3 |
240.0 |
| CB |
CA |
C |
HA |
119.3 |
120.0 |
| C |
CA |
CB |
CG1 |
182.9 |
300.0 |
| C |
CA |
CB |
CG2 |
302.8 |
60.0 |
| C |
CA |
CB |
HB |
62.4 |
180.0 |
| O |
C |
CA |
OXT |
180.4 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| HA |
CA |
N |
HN1 |
141.7 |
149.9 |
| N |
CA |
HA |
CB |
240.3 |
240.0 |
| N |
CA |
HA |
C |
119.5 |
120.0 |
| CB |
CA |
HA |
C |
239.2 |
240.0 |
| HA |
CA |
CB |
CG1 |
302.5 |
60.0 |
| HA |
CA |
CB |
CG2 |
62.4 |
180.1 |
| HA |
CA |
CB |
HB |
181.9 |
300.1 |
| HA |
CA |
C |
O |
161.2 |
330.0 |
| HA |
CA |
C |
OXT |
340.8 |
150.0 |
| CG1 |
CB |
CA |
C |
182.9 |
300.0 |
| CG1 |
CB |
CA |
HA |
302.5 |
60.0 |
| CA |
CB |
CG1 |
CG2 |
121.8 |
120.1 |
| CA |
CB |
CG1 |
HB |
241.4 |
240.1 |
| CG2 |
CB |
CG1 |
HB |
119.6 |
120.0 |
| CG1 |
CB |
CG2 |
HG21 |
300.8 |
60.0 |
| CG1 |
CB |
CG2 |
HG22 |
66.1 |
180.0 |
| CG1 |
CB |
CG2 |
HG23 |
175.6 |
300.0 |
| HG11 |
CG1 |
CB |
HG12 |
234.8 |
240.0 |
| HG11 |
CG1 |
CB |
HG13 |
125.3 |
119.9 |
| HG12 |
CG1 |
CB |
HG13 |
250.5 |
239.9 |
| CG2 |
CB |
CA |
C |
302.8 |
60.0 |
| CG2 |
CB |
CA |
HA |
62.4 |
180.1 |
| CA |
CB |
CG2 |
CG1 |
239.2 |
240.0 |
| CA |
CB |
CG2 |
HB |
118.6 |
120.0 |
| CG1 |
CB |
CG2 |
HB |
239.4 |
240.0 |
| CG2 |
CB |
CG1 |
HG11 |
58.3 |
59.9 |
| CG2 |
CB |
CG1 |
HG12 |
183.4 |
180.0 |
| CG2 |
CB |
CG1 |
HG13 |
292.9 |
300.1 |
| HG21 |
CG2 |
CB |
HG22 |
234.6 |
240.0 |
| HG21 |
CG2 |
CB |
HG23 |
125.2 |
120.0 |
| HG22 |
CG2 |
CB |
HG23 |
250.5 |
240.0 |
| HB |
CB |
CA |
C |
62.4 |
180.0 |
| HB |
CB |
CA |
HA |
181.9 |
300.1 |
| CA |
CB |
HB |
CG1 |
120.0 |
119.9 |
| CA |
CB |
HB |
CG2 |
239.1 |
240.0 |
| CG1 |
CB |
HB |
CG2 |
119.0 |
120.0 |
| HB |
CB |
CG1 |
HG11 |
298.7 |
299.9 |
| HB |
CB |
CG1 |
HG12 |
63.9 |
59.9 |
| HB |
CB |
CG1 |
HG13 |
173.4 |
180.0 |
| HB |
CB |
CG2 |
HG21 |
61.3 |
180.0 |
| HB |
CB |
CG2 |
HG22 |
186.7 |
300.0 |
| HB |
CB |
CG2 |
HG23 |
296.2 |
60.0 |
| HG11 |
CG1 |
CB |
CG2 |
58.3 |
59.9 |
| HG11 |
CG1 |
CB |
HB |
298.7 |
299.9 |
| CB |
CG1 |
HG11 |
HG12 |
125.2 |
120.0 |
| CB |
CG1 |
HG11 |
HG13 |
234.7 |
240.1 |
| HG12 |
CG1 |
HG11 |
HG13 |
109.5 |
120.1 |
| HG12 |
CG1 |
CB |
CG2 |
183.4 |
180.0 |
| HG12 |
CG1 |
CB |
HB |
63.9 |
59.9 |
| CB |
CG1 |
HG12 |
HG11 |
236.1 |
240.0 |
| CB |
CG1 |
HG12 |
HG13 |
118.0 |
120.0 |
| HG11 |
CG1 |
HG12 |
HG13 |
241.9 |
240.0 |
| HG13 |
CG1 |
CB |
CG2 |
292.9 |
300.1 |
| HG13 |
CG1 |
CB |
HB |
173.4 |
180.0 |
| CB |
CG1 |
HG13 |
HG11 |
124.0 |
119.9 |
| CB |
CG1 |
HG13 |
HG12 |
242.0 |
240.0 |
| HG11 |
CG1 |
HG13 |
HG12 |
118.0 |
120.1 |
| HG21 |
CG2 |
CB |
HB |
61.3 |
180.0 |
| CB |
CG2 |
HG21 |
HG22 |
125.3 |
120.0 |
| CB |
CG2 |
HG21 |
HG23 |
234.8 |
240.0 |
| HG22 |
CG2 |
HG21 |
HG23 |
109.5 |
120.0 |
| HG22 |
CG2 |
CB |
HB |
186.7 |
300.0 |
| CB |
CG2 |
HG22 |
HG21 |
234.8 |
240.0 |
| CB |
CG2 |
HG22 |
HG23 |
117.4 |
120.1 |
| HG21 |
CG2 |
HG22 |
HG23 |
242.6 |
240.0 |
| HG23 |
CG2 |
CB |
HB |
296.2 |
60.0 |
| CB |
CG2 |
HG23 |
HG21 |
125.1 |
120.0 |
| CB |
CG2 |
HG23 |
HG22 |
242.6 |
239.9 |
| HG21 |
CG2 |
HG23 |
HG22 |
117.5 |
120.0 |
| O |
C |
CA |
HA |
161.2 |
330.0 |
| CA |
C |
O |
OXT |
179.6 |
180.0 |
| O |
C |
OXT |
HXT |
359.7 |
0.0 |
| OXT |
C |
CA |
HA |
340.8 |
150.0 |
| CA |
C |
OXT |
O |
180.4 |
180.0 |