PDB Chemical Component CDT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CDT
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| NT |
CT |
1.348 |
1.348 |
| NT |
HT1 |
1.021 |
0.969 |
| NT |
HT2 |
1.019 |
0.970 |
| CT |
OT |
1.226 |
1.216 |
| CT |
N |
1.363 |
1.347 |
| N |
CA |
1.480 |
1.464 |
| N |
HN1 |
1.020 |
0.970 |
| CA |
CB |
1.544 |
1.529 |
| CA |
C |
1.522 |
1.507 |
| CA |
HA |
1.115 |
1.090 |
| CB |
CG |
1.550 |
1.529 |
| CB |
HB1 |
1.116 |
1.090 |
| CB |
HB2 |
1.114 |
1.090 |
| CG |
SD |
1.826 |
1.814 |
| CG |
HG1 |
1.116 |
1.090 |
| CG |
HG2 |
1.115 |
1.089 |
| SD |
CE |
1.815 |
1.813 |
| CE |
HE1 |
1.114 |
1.090 |
| CE |
HE2 |
1.115 |
1.090 |
| CE |
HE3 |
1.116 |
1.089 |
| C |
O |
1.213 |
1.208 |
| C |
OXT |
1.332 |
1.341 |
| OXT |
HXT |
0.950 |
0.968 |
Bond Angles for CDT
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CT |
NT |
HT1 |
119.6 |
120.0 |
| CT |
NT |
HT2 |
108.5 |
119.9 |
| NT |
CT |
OT |
119.7 |
119.9 |
| NT |
CT |
N |
119.3 |
120.1 |
| HT1 |
NT |
HT2 |
108.6 |
120.0 |
| OT |
CT |
N |
121.0 |
120.0 |
| CT |
N |
CA |
122.9 |
120.0 |
| CT |
N |
HN1 |
114.3 |
120.0 |
| CA |
N |
HN1 |
122.9 |
120.0 |
| N |
CA |
CB |
108.5 |
109.5 |
| N |
CA |
C |
110.0 |
109.5 |
| N |
CA |
HA |
110.1 |
109.4 |
| CB |
CA |
C |
110.3 |
109.5 |
| CB |
CA |
HA |
109.7 |
109.4 |
| CA |
CB |
CG |
112.7 |
109.5 |
| CA |
CB |
HB1 |
111.1 |
109.4 |
| CA |
CB |
HB2 |
111.1 |
109.5 |
| C |
CA |
HA |
108.2 |
109.5 |
| CA |
C |
O |
120.8 |
120.0 |
| CA |
C |
OXT |
119.1 |
120.0 |
| CG |
CB |
HB1 |
111.0 |
109.5 |
| CG |
CB |
HB2 |
111.0 |
109.5 |
| CB |
CG |
SD |
111.8 |
109.5 |
| CB |
CG |
HG1 |
111.3 |
109.4 |
| CB |
CG |
HG2 |
111.3 |
109.5 |
| HB1 |
CB |
HB2 |
99.3 |
109.4 |
| SD |
CG |
HG1 |
111.4 |
109.4 |
| SD |
CG |
HG2 |
111.4 |
109.4 |
| CG |
SD |
CE |
101.2 |
100.0 |
| HG1 |
CG |
HG2 |
99.0 |
109.5 |
| SD |
CE |
HE1 |
101.2 |
109.5 |
| SD |
CE |
HE2 |
115.4 |
109.5 |
| SD |
CE |
HE3 |
115.4 |
109.5 |
| HE1 |
CE |
HE2 |
115.5 |
109.5 |
| HE1 |
CE |
HE3 |
115.4 |
109.5 |
| HE2 |
CE |
HE3 |
95.0 |
109.4 |
| O |
C |
OXT |
120.1 |
120.0 |
| C |
OXT |
HXT |
119.1 |
120.0 |
Torsion Angles for CDT
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HT1 |
NT |
CT |
HT2 |
125.3 |
180.0 |
| OT |
CT |
NT |
N |
180.7 |
180.0 |
| NT |
CT |
N |
CA |
174.7 |
180.0 |
| NT |
CT |
N |
HN1 |
354.7 |
0.1 |
| CT |
NT |
HT1 |
HT2 |
234.8 |
180.0 |
| HT1 |
NT |
CT |
OT |
180.0 |
360.0 |
| HT1 |
NT |
CT |
N |
359.3 |
180.0 |
| CT |
NT |
HT2 |
HT1 |
131.5 |
180.0 |
| HT2 |
NT |
CT |
OT |
54.7 |
180.0 |
| HT2 |
NT |
CT |
N |
234.0 |
360.0 |
| OT |
CT |
NT |
HT1 |
180.0 |
360.0 |
| OT |
CT |
NT |
HT2 |
54.7 |
180.0 |
| NT |
CT |
OT |
N |
179.3 |
180.0 |
| OT |
CT |
N |
CA |
354.0 |
359.9 |
| OT |
CT |
N |
HN1 |
173.9 |
180.0 |
| N |
CT |
NT |
HT1 |
359.3 |
180.0 |
| N |
CT |
NT |
HT2 |
234.0 |
360.0 |
| NT |
CT |
N |
OT |
180.7 |
180.0 |
| CA |
N |
CT |
HN1 |
180.0 |
179.9 |
| CT |
N |
CA |
CB |
202.9 |
210.1 |
| CT |
N |
CA |
C |
82.2 |
90.0 |
| CT |
N |
CA |
HA |
323.0 |
330.0 |
| CT |
N |
CA |
HN1 |
180.0 |
180.1 |
| CB |
CA |
N |
C |
120.7 |
120.1 |
| CB |
CA |
N |
HA |
239.9 |
240.0 |
| N |
CA |
CB |
CG |
176.3 |
60.0 |
| N |
CA |
CB |
HB1 |
301.6 |
300.0 |
| N |
CA |
CB |
HB2 |
51.1 |
180.1 |
| C |
CA |
N |
HA |
119.2 |
120.0 |
| N |
CA |
C |
O |
40.7 |
210.0 |
| N |
CA |
C |
OXT |
220.5 |
30.0 |
| CT |
N |
HN1 |
CA |
180.0 |
179.9 |
| HN1 |
N |
CA |
CB |
22.9 |
30.0 |
| HN1 |
N |
CA |
C |
262.2 |
269.9 |
| HN1 |
N |
CA |
HA |
143.0 |
149.9 |
| CB |
CA |
N |
HN1 |
22.9 |
30.0 |
| N |
CA |
CB |
C |
239.5 |
240.0 |
| N |
CA |
CB |
HA |
120.4 |
120.0 |
| C |
CA |
CB |
HA |
240.9 |
240.0 |
| CB |
CA |
C |
O |
281.1 |
90.0 |
| CB |
CA |
C |
OXT |
100.9 |
270.0 |
| CG |
CB |
CA |
HB1 |
234.8 |
120.0 |
| CG |
CB |
CA |
HB2 |
125.3 |
239.9 |
| CA |
CB |
CG |
SD |
297.3 |
180.0 |
| CA |
CB |
CG |
HG1 |
62.6 |
60.1 |
| CA |
CB |
CG |
HG2 |
172.1 |
300.0 |
| HB1 |
CB |
CA |
HB2 |
250.5 |
119.9 |
| C |
CA |
N |
HN1 |
262.2 |
269.9 |
| N |
CA |
C |
CB |
119.6 |
120.0 |
| N |
CA |
C |
HA |
239.7 |
240.0 |
| CB |
CA |
C |
HA |
120.1 |
120.0 |
| C |
CA |
CB |
CG |
296.8 |
180.0 |
| C |
CA |
CB |
HB1 |
62.1 |
60.0 |
| C |
CA |
CB |
HB2 |
171.6 |
300.1 |
| O |
C |
CA |
OXT |
180.2 |
180.0 |
| CA |
C |
OXT |
HXT |
180.1 |
179.9 |
| HA |
CA |
N |
HN1 |
143.0 |
149.9 |
| N |
CA |
HA |
CB |
240.7 |
240.0 |
| N |
CA |
HA |
C |
120.2 |
120.0 |
| CB |
CA |
HA |
C |
239.6 |
240.0 |
| HA |
CA |
CB |
CG |
56.0 |
300.0 |
| HA |
CA |
CB |
HB1 |
181.2 |
180.0 |
| HA |
CA |
CB |
HB2 |
290.7 |
60.1 |
| HA |
CA |
C |
O |
161.1 |
330.0 |
| HA |
CA |
C |
OXT |
340.9 |
150.0 |
| CG |
CB |
CA |
C |
296.8 |
180.0 |
| CG |
CB |
CA |
HA |
56.0 |
300.0 |
| CA |
CB |
CG |
HB1 |
125.3 |
240.0 |
| CA |
CB |
CG |
HB2 |
234.7 |
120.1 |
| HB1 |
CB |
CG |
HB2 |
109.4 |
240.1 |
| SD |
CG |
CB |
HG1 |
234.7 |
120.0 |
| SD |
CG |
CB |
HG2 |
125.3 |
240.0 |
| CB |
CG |
SD |
CE |
305.1 |
180.0 |
| HG1 |
CG |
CB |
HG2 |
250.6 |
120.0 |
| HB1 |
CB |
CA |
C |
62.1 |
60.0 |
| HB1 |
CB |
CA |
HA |
181.2 |
180.0 |
| CA |
CB |
HB1 |
CG |
233.8 |
120.0 |
| CA |
CB |
HB1 |
HB2 |
117.0 |
240.0 |
| CG |
CB |
HB1 |
HB2 |
243.1 |
120.0 |
| HB1 |
CB |
CG |
SD |
172.1 |
300.0 |
| HB1 |
CB |
CG |
HG1 |
297.4 |
180.0 |
| HB1 |
CB |
CG |
HG2 |
46.8 |
60.0 |
| HB2 |
CB |
CA |
C |
171.6 |
300.1 |
| HB2 |
CB |
CA |
HA |
290.7 |
60.1 |
| CA |
CB |
HB2 |
CG |
126.2 |
239.9 |
| CA |
CB |
HB2 |
HB1 |
243.1 |
119.9 |
| CG |
CB |
HB2 |
HB1 |
116.9 |
240.1 |
| HB2 |
CB |
CG |
SD |
62.6 |
59.9 |
| HB2 |
CB |
CG |
HG1 |
187.9 |
299.9 |
| HB2 |
CB |
CG |
HG2 |
297.3 |
179.9 |
| SD |
CG |
CB |
HB1 |
172.1 |
300.0 |
| SD |
CG |
CB |
HB2 |
62.6 |
59.9 |
| CB |
CG |
SD |
HG1 |
125.2 |
240.0 |
| CB |
CG |
SD |
HG2 |
234.7 |
120.0 |
| HG1 |
CG |
SD |
HG2 |
109.5 |
240.0 |
| CG |
SD |
CE |
HE1 |
180.0 |
180.0 |
| CG |
SD |
CE |
HE2 |
305.3 |
300.0 |
| CG |
SD |
CE |
HE3 |
54.7 |
59.9 |
| HG1 |
CG |
CB |
HB1 |
297.4 |
180.0 |
| HG1 |
CG |
CB |
HB2 |
187.9 |
299.9 |
| CB |
CG |
HG1 |
SD |
234.5 |
120.0 |
| CB |
CG |
HG1 |
HG2 |
117.2 |
240.0 |
| SD |
CG |
HG1 |
HG2 |
242.7 |
120.0 |
| HG1 |
CG |
SD |
CE |
179.9 |
300.0 |
| HG2 |
CG |
CB |
HB1 |
46.8 |
60.0 |
| HG2 |
CG |
CB |
HB2 |
297.3 |
179.9 |
| CB |
CG |
HG2 |
SD |
125.6 |
239.9 |
| CB |
CG |
HG2 |
HG1 |
242.8 |
120.0 |
| SD |
CG |
HG2 |
HG1 |
117.3 |
240.0 |
| HG2 |
CG |
SD |
CE |
70.4 |
60.0 |
| CE |
SD |
CG |
HG1 |
179.9 |
300.0 |
| CE |
SD |
CG |
HG2 |
70.4 |
60.0 |
| HE1 |
CE |
SD |
HE2 |
234.6 |
240.0 |
| HE1 |
CE |
SD |
HE3 |
125.3 |
120.1 |
| HE2 |
CE |
SD |
HE3 |
250.6 |
240.1 |
| SD |
CE |
HE1 |
HE2 |
125.3 |
120.0 |
| SD |
CE |
HE1 |
HE3 |
234.8 |
240.0 |
| HE2 |
CE |
HE1 |
HE3 |
109.5 |
120.0 |
| SD |
CE |
HE2 |
HE1 |
242.4 |
240.0 |
| SD |
CE |
HE2 |
HE3 |
121.2 |
120.0 |
| HE1 |
CE |
HE2 |
HE3 |
238.8 |
240.0 |
| SD |
CE |
HE3 |
HE1 |
117.5 |
120.0 |
| SD |
CE |
HE3 |
HE2 |
238.8 |
240.1 |
| HE1 |
CE |
HE3 |
HE2 |
121.3 |
120.0 |
| O |
C |
CA |
HA |
161.1 |
330.0 |
| CA |
C |
O |
OXT |
179.8 |
180.0 |
| O |
C |
OXT |
HXT |
359.9 |
359.9 |
| OXT |
C |
CA |
HA |
340.9 |
150.0 |
| CA |
C |
OXT |
O |
180.2 |
180.0 |