PDB Chemical Component CDQ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CDQ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CL25 |
C1 |
1.737 |
1.736 |
| C6 |
C1 |
1.380 |
1.384 |
| C1 |
C2 |
1.385 |
1.384 |
| C2 |
C3 |
1.386 |
1.380 |
| C2 |
H2 |
1.080 |
1.080 |
| C4 |
C3 |
1.377 |
1.394 |
| C3 |
H3 |
1.080 |
1.080 |
| C5 |
C4 |
1.368 |
1.389 |
| C4 |
N10 |
1.403 |
1.396 |
| C6 |
C5 |
1.374 |
1.377 |
| C5 |
C7 |
1.479 |
1.512 |
| C6 |
H6 |
1.080 |
1.080 |
| C7 |
C8 |
1.513 |
1.514 |
| C7 |
H7 |
1.100 |
1.090 |
| C7 |
H7A |
1.100 |
1.090 |
| C8 |
O9 |
1.228 |
1.213 |
| C8 |
N10 |
1.390 |
1.344 |
| N10 |
C11 |
1.444 |
1.465 |
| C12 |
C11 |
1.513 |
1.508 |
| C11 |
H11 |
1.100 |
1.090 |
| C11 |
H11A |
1.101 |
1.090 |
| C13 |
C12 |
1.385 |
1.377 |
| C12 |
C17 |
1.389 |
1.398 |
| C14 |
C13 |
1.395 |
1.385 |
| C13 |
H13 |
1.080 |
1.080 |
| C14 |
C15 |
1.402 |
1.386 |
| C14 |
H14 |
1.081 |
1.080 |
| O24 |
C15 |
1.363 |
1.361 |
| C15 |
C16 |
1.395 |
1.390 |
| C16 |
C17 |
1.386 |
1.401 |
| C16 |
O21 |
1.405 |
1.358 |
| C17 |
C18 |
1.504 |
1.474 |
| O20 |
C18 |
1.269 |
1.215 |
| C18 |
O19 |
1.262 |
1.348 |
| O19 |
HO19 |
0.950 |
0.967 |
| C22 |
O21 |
1.437 |
1.431 |
| C23 |
C22 |
1.481 |
1.535 |
| C22 |
H22 |
1.101 |
1.090 |
| C22 |
H22A |
1.100 |
1.090 |
| O24 |
C23 |
1.486 |
1.432 |
| C23 |
H23 |
1.099 |
1.090 |
| C23 |
H23A |
1.100 |
1.089 |
Bond Angles for CDQ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C2 |
C3 |
121.2 |
120.4 |
| C1 |
C2 |
H2 |
119.4 |
119.9 |
| C3 |
C2 |
H2 |
119.4 |
119.8 |
| C2 |
C3 |
H3 |
121.4 |
120.0 |
| C4 |
C3 |
H3 |
121.4 |
119.9 |
| C5 |
C4 |
N10 |
108.6 |
110.3 |
| C4 |
N10 |
C8 |
110.1 |
112.2 |
| C4 |
N10 |
C11 |
124.6 |
123.9 |
| C6 |
C5 |
C7 |
126.7 |
132.8 |
| C5 |
C7 |
C8 |
101.8 |
104.1 |
| C5 |
C7 |
H7 |
112.1 |
110.5 |
| C5 |
C7 |
H7A |
112.1 |
110.5 |
| C8 |
C7 |
H7 |
112.1 |
110.5 |
| C8 |
C7 |
H7A |
112.1 |
110.5 |
| C7 |
C8 |
O9 |
124.0 |
126.4 |
| C7 |
C8 |
N10 |
107.5 |
107.1 |
| H7 |
C7 |
H7A |
106.7 |
110.6 |
| O9 |
C8 |
N10 |
128.5 |
126.5 |
| C8 |
N10 |
C11 |
122.5 |
123.9 |
| N10 |
C11 |
H11 |
107.6 |
109.4 |
| N10 |
C11 |
H11A |
107.6 |
109.5 |
| C12 |
C11 |
H11 |
107.6 |
109.4 |
| C12 |
C11 |
H11A |
107.6 |
109.5 |
| H11 |
C11 |
H11A |
111.2 |
109.5 |
| C13 |
C12 |
C17 |
121.4 |
120.0 |
| C12 |
C17 |
C16 |
119.4 |
119.7 |
| C12 |
C17 |
C18 |
118.4 |
120.1 |
| C14 |
C13 |
H13 |
119.6 |
119.9 |
| C15 |
C14 |
H14 |
121.7 |
119.8 |
| C14 |
C15 |
C16 |
123.3 |
119.9 |
| C15 |
C16 |
C17 |
118.5 |
119.7 |
| C15 |
C16 |
O21 |
123.5 |
120.8 |
| C17 |
C16 |
O21 |
118.1 |
119.4 |
| C16 |
C17 |
C18 |
122.2 |
120.2 |
| C17 |
C18 |
O19 |
119.3 |
120.0 |
| C18 |
O19 |
HO19 |
109.5 |
117.0 |
| C23 |
C22 |
H22 |
110.3 |
109.7 |
| C23 |
C22 |
H22A |
110.3 |
109.7 |
| H22 |
C22 |
H22A |
108.7 |
109.7 |
| O24 |
C23 |
H23 |
109.8 |
109.6 |
| O24 |
C23 |
H23A |
109.8 |
109.8 |
| H23 |
C23 |
H23A |
109.1 |
109.7 |
Torsion Angles for CDQ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CL25 |
C1 |
C2 |
H2 |
359.5 |
359.7 |
| C6 |
C1 |
C2 |
H2 |
179.3 |
180.1 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
H3 |
179.7 |
179.9 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.1 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
| H2 |
C2 |
C3 |
H3 |
359.7 |
359.9 |
| C4 |
C3 |
C2 |
H2 |
179.7 |
180.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
179.9 |
| H3 |
C3 |
C2 |
H2 |
359.7 |
359.9 |
| C5 |
C4 |
C3 |
H3 |
181.5 |
180.0 |
| C5 |
C4 |
N10 |
C8 |
6.5 |
359.9 |
| C5 |
C4 |
N10 |
C11 |
205.1 |
180.0 |
| N10 |
C4 |
C3 |
H3 |
358.8 |
0.0 |
| C7 |
C8 |
N10 |
C4 |
349.6 |
0.1 |
| O9 |
C8 |
N10 |
C4 |
168.8 |
180.0 |
| C8 |
N10 |
C4 |
C11 |
161.4 |
179.9 |
| C4 |
N10 |
C11 |
H11 |
193.8 |
205.4 |
| C4 |
N10 |
C11 |
H11A |
313.8 |
325.4 |
| C6 |
C5 |
C4 |
N10 |
180.4 |
180.0 |
| C6 |
C5 |
C7 |
C8 |
173.7 |
180.0 |
| C6 |
C5 |
C7 |
H7 |
293.7 |
298.6 |
| C6 |
C5 |
C7 |
H7A |
53.7 |
61.4 |
| C7 |
C5 |
C4 |
N10 |
0.3 |
0.1 |
| C8 |
C7 |
C5 |
H7 |
240.0 |
241.4 |
| C8 |
C7 |
C5 |
H7A |
120.0 |
118.6 |
| C5 |
C7 |
C8 |
O9 |
190.6 |
180.0 |
| C5 |
C7 |
C8 |
N10 |
9.9 |
360.0 |
| H7 |
C7 |
C5 |
H7A |
240.0 |
237.2 |
| H6 |
C6 |
C5 |
C7 |
0.8 |
360.0 |
| C4 |
N10 |
C8 |
C7 |
349.6 |
0.1 |
| C5 |
C7 |
C8 |
H7 |
120.0 |
118.6 |
| C5 |
C7 |
C8 |
H7A |
240.0 |
241.4 |
| H7 |
C7 |
C8 |
H7A |
120.0 |
122.8 |
| O9 |
C8 |
C7 |
N10 |
180.7 |
180.0 |
| C7 |
C8 |
N10 |
C11 |
151.4 |
180.0 |
| C5 |
C7 |
H7 |
C8 |
246.2 |
245.4 |
| C5 |
C7 |
H7 |
H7A |
123.1 |
122.7 |
| C8 |
C7 |
H7 |
H7A |
236.9 |
237.3 |
| H7 |
C7 |
C8 |
O9 |
70.6 |
61.4 |
| H7 |
C7 |
C8 |
N10 |
249.9 |
241.3 |
| C5 |
C7 |
H7A |
C8 |
113.8 |
114.6 |
| C5 |
C7 |
H7A |
H7 |
236.9 |
237.3 |
| C8 |
C7 |
H7A |
H7 |
123.1 |
122.7 |
| H7A |
C7 |
C8 |
O9 |
310.6 |
298.6 |
| H7A |
C7 |
C8 |
N10 |
129.9 |
118.6 |
| C4 |
N10 |
C8 |
O9 |
168.8 |
180.0 |
| O9 |
C8 |
C7 |
H7 |
70.6 |
61.4 |
| O9 |
C8 |
C7 |
H7A |
310.6 |
298.6 |
| C7 |
C8 |
O9 |
N10 |
179.1 |
180.0 |
| O9 |
C8 |
N10 |
C11 |
330.7 |
359.9 |
| C4 |
N10 |
C8 |
C11 |
198.2 |
180.1 |
| N10 |
C8 |
C7 |
H7 |
249.9 |
241.3 |
| N10 |
C8 |
C7 |
H7A |
129.9 |
118.6 |
| C7 |
C8 |
N10 |
O9 |
180.8 |
180.0 |
| C8 |
N10 |
C11 |
H11 |
34.6 |
25.5 |
| C8 |
N10 |
C11 |
H11A |
154.6 |
145.5 |
| C4 |
N10 |
C11 |
C8 |
159.2 |
179.9 |
| C12 |
C11 |
N10 |
H11 |
240.0 |
240.0 |
| C12 |
C11 |
N10 |
H11A |
120.0 |
120.1 |
| H11 |
C11 |
N10 |
H11A |
240.0 |
240.0 |
| N10 |
C11 |
C12 |
H11 |
120.0 |
120.0 |
| N10 |
C11 |
C12 |
H11A |
240.0 |
240.0 |
| H11 |
C11 |
C12 |
H11A |
120.0 |
120.0 |
| N10 |
C11 |
H11 |
H11A |
117.7 |
120.0 |
| C12 |
C11 |
H11 |
H11A |
242.3 |
240.0 |
| N10 |
C11 |
H11A |
H11 |
242.3 |
240.0 |
| C12 |
C11 |
H11A |
H11 |
117.7 |
120.0 |
| C13 |
C12 |
C11 |
H11 |
282.9 |
245.7 |
| C13 |
C12 |
C11 |
H11A |
162.9 |
125.7 |
| C13 |
C12 |
C17 |
C16 |
358.8 |
359.4 |
| C13 |
C12 |
C17 |
C18 |
180.4 |
179.8 |
| C17 |
C12 |
C11 |
H11 |
102.3 |
65.5 |
| C17 |
C12 |
C11 |
H11A |
342.3 |
305.5 |
| C15 |
C16 |
C17 |
C12 |
0.5 |
0.5 |
| C12 |
C17 |
C16 |
O21 |
179.4 |
180.0 |
| C16 |
C17 |
C12 |
C18 |
178.4 |
179.6 |
| C12 |
C17 |
C18 |
O19 |
263.5 |
274.7 |
| C14 |
C13 |
C12 |
C17 |
1.0 |
0.3 |
| H13 |
C13 |
C12 |
C17 |
181.0 |
180.3 |
| C15 |
C14 |
C13 |
H13 |
180.0 |
180.1 |
| C14 |
C15 |
C16 |
C17 |
0.4 |
359.9 |
| C14 |
C15 |
C16 |
O21 |
181.6 |
180.4 |
| H14 |
C14 |
C13 |
H13 |
360.0 |
0.0 |
| H14 |
C14 |
C15 |
C16 |
179.3 |
179.9 |
| O24 |
C15 |
C14 |
H14 |
0.7 |
359.7 |
| C12 |
C17 |
C16 |
C15 |
0.5 |
0.5 |
| C16 |
C15 |
C14 |
H14 |
179.3 |
179.9 |
| C17 |
C16 |
C15 |
O21 |
178.8 |
179.5 |
| C15 |
C16 |
C17 |
C18 |
178.9 |
180.1 |
| C12 |
C17 |
C16 |
C18 |
181.7 |
180.4 |
| C15 |
C16 |
C17 |
O21 |
181.1 |
180.5 |
| C16 |
C17 |
C18 |
O19 |
85.2 |
95.1 |
| C15 |
C16 |
O21 |
C17 |
178.8 |
179.5 |
| O21 |
C16 |
C17 |
C18 |
357.7 |
359.6 |
| C12 |
C17 |
C18 |
C16 |
178.3 |
179.6 |
| C18 |
C17 |
C16 |
O21 |
357.7 |
359.6 |
| C17 |
C18 |
O19 |
HO19 |
178.9 |
175.0 |
| O20 |
C18 |
O19 |
HO19 |
0.0 |
354.9 |
| H22 |
C22 |
C23 |
H22A |
120.0 |
120.6 |
| C23 |
C22 |
H22 |
H22A |
239.0 |
239.4 |
| C23 |
C22 |
H22A |
H22 |
121.0 |
120.6 |
| O24 |
C23 |
C22 |
H22 |
168.8 |
180.7 |
| O24 |
C23 |
C22 |
H22A |
48.8 |
60.1 |
| H23 |
C23 |
O24 |
H23A |
120.0 |
120.6 |
| H23 |
C23 |
C22 |
H22 |
288.8 |
300.3 |
| H23 |
C23 |
C22 |
H22A |
168.8 |
179.7 |
| O24 |
C23 |
H23 |
H23A |
239.6 |
239.4 |
| H23A |
C23 |
C22 |
H22 |
48.8 |
60.9 |
| H23A |
C23 |
C22 |
H22A |
288.8 |
300.3 |
| O24 |
C23 |
H23A |
H23 |
120.4 |
120.5 |