PDB Chemical Component CDI

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CDI

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C4	C3	1.562	1.550
C4	O2	1.434	1.428
C4	HC41	1.115	1.090
C4	HC42	1.115	1.089
C3	OB4	1.458	1.440
C3	C2	1.571	1.528
C3	C5	1.556	1.520
OB4	PB	1.625	1.603
PB	OB2	1.587	1.621
PB	OB3	1.611	1.465
PB	OB1	1.536	1.621
OB2	HB2O	0.950	0.967
PA	OA3	1.614	1.608
PA	OA1	1.578	1.610
PA	OA2	1.589	1.482
PA	OB1	1.511	1.610
OA3	C1	1.460	1.414
OA1	HA1O	0.950	0.967
C1	C2	1.577	1.524
C1	HC11	1.115	1.102
C1	HC12	1.115	1.091
C2	O1	1.431	1.441
C2	HC2	1.115	1.095
O1	HO1	0.950	0.967
C5	HC51	1.115	1.090
C5	HC52	1.115	1.090
C5	HC53	1.115	1.090
O2	HO2	0.950	0.966

Bond Angles for CDI

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C3	C4	O2	110.8	109.5
C3	C4	HC41	111.7	109.5
C3	C4	HC42	111.7	109.5
C4	C3	OB4	107.9	106.3
C4	C3	C2	114.1	107.3
C4	C3	C5	107.9	107.2
O2	C4	HC41	111.8	109.4
O2	C4	HC42	111.7	109.5
C4	O2	HO2	110.8	106.8
HC41	C4	HC42	98.7	109.4
OB4	C3	C2	104.8	110.1
OB4	C3	C5	112.2	112.2
C3	OB4	PB	141.0	111.1
C2	C3	C5	110.0	113.3
C3	C2	C1	115.7	113.6
C3	C2	O1	110.8	108.4
C3	C2	HC2	102.9	109.6
C3	C5	HC51	112.8	109.4
C3	C5	HC52	108.0	109.5
C3	C5	HC53	112.8	109.5
OB4	PB	OB2	110.9	108.0
OB4	PB	OB3	111.7	113.1
OB4	PB	OB1	111.7	108.7
OB2	PB	OB3	109.9	108.5
OB2	PB	OB1	92.0	107.5
PB	OB2	HB2O	110.9	106.7
OB3	PB	OB1	118.9	110.8
PB	OB1	PA	123.1	105.8
OA3	PA	OA1	111.8	110.0
OA3	PA	OA2	112.9	109.7
OA3	PA	OB1	123.6	108.8
PA	OA3	C1	141.2	108.8
OA1	PA	OA2	109.2	109.3
OA1	PA	OB1	99.4	109.6
PA	OA1	HA1O	111.8	106.9
OA2	PA	OB1	98.3	109.5
OA3	C1	C2	116.1	113.6
OA3	C1	HC11	109.8	108.2
OA3	C1	HC12	109.8	110.0
C2	C1	HC11	109.8	108.2
C2	C1	HC12	109.8	110.5
C1	C2	O1	105.0	108.4
C1	C2	HC2	108.8	109.8
HC11	C1	HC12	100.4	105.9
O1	C2	HC2	113.9	106.7
C2	O1	HO1	110.8	106.8
HC51	C5	HC52	112.8	109.4
HC51	C5	HC53	97.7	109.5
HC52	C5	HC53	112.8	109.5

Torsion Angles for CDI

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O2	C4	C3	HC41	125.3	240.0
O2	C4	C3	HC42	234.7	120.1
C3	C4	O2	HO2	180.0	180.0
HC41	C4	C3	HC42	109.4	240.1
OB4	C3	C4	C2	116.0	117.8
OB4	C3	C4	C5	238.5	239.8
C4	C3	OB4	PB	109.8	185.9
C2	C3	C4	C5	122.5	122.0
C4	C3	C2	C1	178.6	225.8
C4	C3	C2	O1	297.9	346.4
C4	C3	C2	HC2	60.1	102.5
C4	C3	C5	HC51	54.7	300.0
C4	C3	C5	HC52	180.0	59.9
C4	C3	C5	HC53	305.2	179.9
C3	C4	O2	HC41	234.7	120.0
C3	C4	O2	HC42	125.2	239.9
O2	C4	C3	OB4	58.9	299.8
O2	C4	C3	C2	302.9	182.0
O2	C4	C3	C5	180.4	60.1
HC41	C4	O2	HC42	250.5	119.9
C3	C4	HC41	O2	124.8	240.0
C3	C4	HC41	HC42	242.4	120.0
HC41	C4	C3	OB4	293.6	59.8
HC41	C4	C3	C2	177.6	302.0
HC41	C4	C3	C5	55.1	180.0
O2	C4	HC41	HC42	117.6	240.0
HC41	C4	O2	HO2	305.3	60.0
C3	C4	HC42	O2	235.3	120.1
C3	C4	HC42	HC41	117.6	240.0
HC42	C4	C3	OB4	184.1	179.7
HC42	C4	C3	C2	68.2	62.0
HC42	C4	C3	C5	305.6	300.0
O2	C4	HC42	HC41	242.3	120.0
HC42	C4	O2	HO2	54.8	300.1
OB4	C3	C4	O2	58.9	299.8
OB4	C3	C4	HC41	293.6	59.8
OB4	C3	C4	HC42	184.1	179.7
C4	C3	OB4	C2	238.1	244.1
C4	C3	OB4	C5	118.8	116.9
C2	C3	OB4	C5	240.7	232.8
OB4	C3	C2	C1	60.8	110.5
OB4	C3	C2	O1	180.2	231.1
OB4	C3	C2	HC2	302.3	347.2
OB4	C3	C5	HC51	173.5	56.4
OB4	C3	C5	HC52	298.7	176.3
OB4	C3	C5	HC53	64.0	296.3
C3	OB4	PB	OB2	180.7	190.4
C3	OB4	PB	OB3	303.7	310.5
C3	OB4	PB	OB1	79.6	74.0
C2	C3	C4	O2	302.9	182.0
C2	C3	C4	HC41	177.6	302.0
C2	C3	C4	HC42	68.2	62.0
C4	C3	C2	OB4	117.8	115.3
C4	C3	C2	C5	238.6	241.9
OB4	C3	C2	C5	120.8	126.6
C2	C3	OB4	PB	231.7	301.8
C2	C3	C5	HC51	289.7	181.9
C2	C3	C5	HC52	55.0	301.8
C2	C3	C5	HC53	180.2	61.8
OA3	C1	C2	C3	302.6	298.7
C3	C2	C1	HC11	67.9	178.5
C3	C2	C1	HC12	177.3	63.0
C1	C2	C3	O1	240.6	239.4
C1	C2	C3	HC2	118.5	123.3
O1	C2	C3	HC2	237.9	243.9
C3	C2	O1	HO1	180.0	176.2
C5	C3	C4	O2	180.4	60.1
C5	C3	C4	HC41	55.1	180.0
C5	C3	C4	HC42	305.6	300.0
C4	C3	C5	OB4	241.3	243.6
C4	C3	C5	C2	125.0	118.1
OB4	C3	C5	C2	243.8	234.5
C5	C3	OB4	PB	351.0	69.0
C5	C3	C2	C1	300.0	343.8
C5	C3	C2	O1	59.4	104.4
C5	C3	C2	HC2	181.5	220.5
HC51	C5	C3	HC52	234.8	240.1
HC51	C5	C3	HC53	109.5	120.1
HC52	C5	C3	HC53	234.7	240.0
PB	OB4	C3	C2	231.7	301.8
PB	OB4	C3	C5	351.0	69.0
OB2	PB	OB4	OB3	237.0	239.9
OB2	PB	OB4	OB1	101.1	116.4
OB4	PB	OB2	HB2O	180.0	180.0
OB3	PB	OB4	OB1	224.1	236.4
OB4	PB	OB1	PA	28.9	241.6
OB4	PB	OB2	OB3	124.0	122.9
OB4	PB	OB2	OB1	245.8	242.9
OB3	PB	OB2	OB1	121.8	120.0
OB2	PB	OB1	PA	275.4	124.9
OB4	PB	OB3	OB2	236.4	240.2
OB4	PB	OB3	OB1	132.4	122.4
OB2	PB	OB3	OB1	256.0	242.1
OB3	PB	OB2	HB2O	56.0	57.2
OB3	PB	OB1	PA	161.3	6.5
OB4	PB	OB1	OB2	113.5	116.7
OB4	PB	OB1	OB3	227.6	235.1
OB2	PB	OB1	OB3	114.1	118.5
OB1	PB	OB2	HB2O	294.2	297.2
OA3	PA	OB1	PB	334.4	42.2
OA1	PA	OB1	PB	98.6	162.5
OA2	PA	OB1	PB	209.7	282.4
HB2O	OB2	PB	OB3	56.0	57.2
HB2O	OB2	PB	OB1	294.2	297.2
PB	OB1	PA	OA3	334.4	42.2
OA1	PA	OA3	OA2	123.5	120.2
OA1	PA	OA3	OB1	241.5	239.9
OA3	PA	OA1	HA1O	180.0	179.6
OA2	PA	OA3	OB1	118.0	119.7
PA	OA3	C1	C2	92.7	295.8
PA	OA3	C1	HC11	327.5	56.0
PA	OA3	C1	HC12	218.0	171.3
PB	OB1	PA	OA1	98.6	162.5
OA3	PA	OA1	OA2	234.4	239.5
OA3	PA	OA1	OB1	132.1	119.6
OA1	PA	OA3	C1	180.2	309.8
OA2	PA	OA1	OB1	257.7	240.0
PB	OB1	PA	OA2	209.7	282.4
OA3	PA	OA2	OA1	125.0	120.7
OA3	PA	OA2	OB1	228.0	240.8
OA2	PA	OA3	C1	56.7	189.6
OA1	PA	OA2	OB1	103.1	120.1
OA2	PA	OA1	HA1O	305.6	300.0
OA3	PA	OB1	OA1	235.8	239.6
OA3	PA	OB1	OA2	124.7	119.8
OB1	PA	OA3	C1	298.7	69.9
OA1	PA	OB1	OA2	248.9	240.1
OB1	PA	OA1	HA1O	47.9	60.0
C3	C2	C1	OA3	302.6	298.7
C1	OA3	PA	OA1	180.2	309.8
C1	OA3	PA	OA2	56.7	189.6
C1	OA3	PA	OB1	298.7	69.9
C2	C1	OA3	HC11	125.3	239.8
C2	C1	OA3	HC12	234.7	124.5
OA3	C1	C2	O1	180.1	178.1
OA3	C1	C2	HC2	57.7	61.9
HC11	C1	OA3	HC12	109.5	244.7
HA1O	OA1	PA	OA2	305.6	300.0
HA1O	OA1	PA	OB1	47.9	60.0
C1	C2	C3	C5	300.0	343.8
C3	C2	C1	O1	122.5	120.6
C3	C2	C1	HC2	244.9	236.8
OA3	C1	C2	HC11	234.7	120.2
OA3	C1	C2	HC12	125.3	235.7
HC11	C1	C2	HC12	250.6	115.5
O1	C2	C1	HC2	122.4	116.2
C1	C2	O1	HO1	305.6	300.0
OA3	C1	HC11	C2	128.8	236.4
OA3	C1	HC11	HC12	244.4	117.9
C2	C1	HC11	HC12	115.6	241.5
HC11	C1	C2	O1	305.4	57.9
HC11	C1	C2	HC2	183.0	301.6
OA3	C1	HC12	C2	231.2	126.3
OA3	C1	HC12	HC11	115.6	243.3
C2	C1	HC12	HC11	244.4	117.0
HC12	C1	C2	O1	54.8	302.3
HC12	C1	C2	HC2	292.4	186.1
O1	C2	C3	C5	59.4	104.4
C3	C2	O1	C1	234.4	236.2
C3	C2	O1	HC2	115.4	118.0
O1	C2	C1	HC11	305.4	57.9
O1	C2	C1	HC12	54.8	302.3
C1	C2	O1	HC2	241.0	241.7
HC2	C2	C3	C5	181.5	220.5
C3	C2	HC2	C1	123.2	125.5
C3	C2	HC2	O1	240.0	242.8
HC2	C2	C1	HC11	183.0	301.6
HC2	C2	C1	HC12	292.4	186.1
C1	C2	HC2	O1	116.8	117.3
HC2	C2	O1	HO1	64.6	58.2
HO1	O1	C2	HC2	64.6	58.2
C3	C5	HC51	HC52	122.6	119.9
C3	C5	HC51	HC53	241.3	239.9
HC52	C5	HC51	HC53	118.7	120.0
C3	C5	HC52	HC51	234.7	240.1
C3	C5	HC52	HC53	125.3	120.0
HC51	C5	HC52	HC53	250.5	240.0
C3	C5	HC53	HC51	118.7	120.0
C3	C5	HC53	HC52	237.4	240.0
HC51	C5	HC53	HC52	118.7	120.0
HO2	O2	C4	HC41	305.3	60.0
HO2	O2	C4	HC42	54.8	300.1