PDB Chemical Component CDH

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CDH

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O43 C31 1.245 1.225
C31 O42 1.248 1.355
C31 C30 1.537 1.518
O42 H42 0.950 0.981
C30 C32 1.614 1.509
C30 N29 1.458 1.444
C30 H30 1.100 1.097
C32 C37 1.213 1.344
C32 C33 1.522 1.505
C37 H371 1.080 1.085
C37 H372 1.080 1.085
C33 H331 1.100 1.094
C33 H332 1.100 1.096
C33 H333 1.100 1.094
N29 C13 1.354 1.388
N29 H29 1.000 1.016
C13 O18 1.211 1.230
C13 C12 1.534 1.528
C12 C16 1.546 1.531
C12 N30   1.443
C12 H121 1.100 1.097
C16 S 1.115 1.823
C16 H161 1.100 1.094
C16 H162 1.100 1.095
S HS 1.300 1.339
N30 C25   1.387
N30 H30N   1.016
C25 O25   1.228
C25 C24   1.518
C24 C23   1.528
C24 H241   1.097
C24 H242   1.096
C23 C22   1.535
C23 H231   1.096
C23 H232   1.097
C22 C21   1.536
C22 H221   1.098
C22 H222   1.098
C21 N31   1.461
C21 C20   1.515
C21 H211   1.096
N31 H311   0.996
N31 H312   0.997
C20 O20   1.223
C20 O21   1.359
O21 H21   0.982

Bond Angles for CDH

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O43 C31 O42 122.5 122.9
O43 C31 C30 117.3 124.1
O42 C31 C30 120.1 113.0
C31 O42 H42 109.5 112.0
C31 C30 C32 110.4 110.4
C31 C30 N29 108.0 112.7
C31 C30 H30 116.5 106.5
C32 C30 N29 123.3 110.3
C32 C30 H30 97.7 111.4
C30 C32 C37 128.9 120.8
C30 C32 C33 115.5 118.6
N29 C30 H30 100.7 105.5
C30 N29 C13 125.0 122.7
C30 N29 H29 117.5 117.8
C37 C32 C33 115.6 120.6
C32 C37 H371 110.8 121.5
C32 C37 H372 124.6 121.4
C32 C33 H331 109.5 110.8
C32 C33 H332 109.5 111.9
C32 C33 H333 109.5 110.8
H371 C37 H372 124.6 117.2
H331 C33 H332 109.5 107.3
H331 C33 H333 109.5 108.7
H332 C33 H333 109.5 107.3
C13 N29 H29 117.5 119.4
N29 C13 O18 120.9 124.8
N29 C13 C12 115.5 112.3
O18 C13 C12 123.6 123.0
C13 C12 C16 112.4 113.3
C13 C12 N30   108.9
C13 C12 H121 140.9 107.6
C16 C12 N30   112.4
C16 C12 H121 99.6 108.6
C12 C16 S 111.2 113.7
C12 C16 H161 108.9 110.6
C12 C16 H162 108.5 109.9
N30 C12 H121   105.6
C12 N30 C25   122.1
C12 N30 H30N   118.3
S C16 H161 108.9 107.4
S C16 H162 108.5 107.4
C16 S HS 109.5 95.8
H161 C16 H162 110.8 107.6
C25 N30 H30N   119.7
N30 C25 O25   125.0
N30 C25 C24   111.6
O25 C25 C24   123.4
C25 C24 C23   112.4
C25 C24 H241   108.2
C25 C24 H242   108.3
C23 C24 H241   109.9
C23 C24 H242   110.0
C24 C23 C22   111.1
C24 C23 H231   109.2
C24 C23 H232   109.3
H241 C24 H242   108.0
C22 C23 H231   110.1
C22 C23 H232   110.0
C23 C22 C21   114.5
C23 C22 H221   109.0
C23 C22 H222   108.7
H231 C23 H232   106.9
C21 C22 H221   108.9
C21 C22 H222   109.2
C22 C21 N31   111.5
C22 C21 C20   112.2
C22 C21 H211   109.3
H221 C22 H222   106.2
N31 C21 C20   108.3
N31 C21 H211   107.9
C21 N31 H311   118.0
C21 N31 H312   118.0
C20 C21 H211   107.5
C21 C20 O20   126.3
C21 C20 O21   110.5
H311 N31 H312   122.5
O20 C20 O21   123.2
C20 O21 H21   111.9

Torsion Angles for CDH

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O42 C31 O43 C30 180.1 182.5
O43 C31 O42 H42 0.0 0.0
O43 C31 C30 C32 32.6 61.0
O43 C31 C30 N29 170.0 184.8
O43 C31 C30 H30 282.3 300.0
O43 C31 O42 C30 179.9 177.7
O42 C31 C30 C32 212.4 238.7
O42 C31 C30 N29 349.9 2.5
O42 C31 C30 H30 102.2 117.7
O43 C31 C30 O42 180.1 182.3
C30 C31 O42 H42 180.1 182.3
C32 C30 C31 N29 222.6 236.2
C32 C30 C31 H30 110.2 121.0
C31 C30 C32 C37 16.5 242.1
C31 C30 C32 C33 196.2 61.2
N29 C30 C31 H30 247.7 244.9
C31 C30 N29 C13 83.5 145.7
C31 C30 N29 H29 263.5 328.5
H42 O42 C31 C30 180.1 182.3
C31 C30 C32 N29 129.7 125.2
C31 C30 C32 H30 237.9 241.9
N29 C30 C32 H30 108.2 116.7
C32 C30 N29 C13 214.2 269.6
C32 C30 N29 H29 34.2 92.4
C37 C32 C30 C33 180.4 180.8
C30 C32 C37 H371 180.0 359.2
C30 C32 C37 H372 0.0 179.2
C30 C32 C33 H331 194.1 304.7
C30 C32 C33 H332 314.1 185.1
C30 C32 C33 H333 74.2 65.4
C31 C30 N29 C32 229.3 236.1
C31 C30 N29 H30 122.6 115.7
C32 C30 N29 H30 253.3 239.6
N29 C30 C32 C37 246.8 116.9
N29 C30 C32 C33 66.4 296.0
C13 N29 C30 H29 180.0 177.2
C30 N29 C13 O18 324.8 360.0
C30 N29 C13 C12 146.4 178.9
C31 C30 H30 C32 117.5 120.4
C31 C30 H30 N29 243.5 240.1
C32 C30 H30 N29 126.1 119.7
H30 C30 C32 C37 138.6 0.1
H30 C30 C32 C33 318.2 179.3
H30 C30 N29 C13 320.9 30.0
H30 C30 N29 H29 140.9 212.8
C37 C32 C30 N29 246.8 116.9
C37 C32 C30 H30 138.6 0.1
C30 C32 C37 C33 179.6 179.2
C37 C32 C33 H331 13.8 123.9
C37 C32 C33 H332 133.8 4.2
C37 C32 C33 H333 253.8 244.5
H371 C37 C32 H372 180.0 179.9
C33 C32 C30 N29 66.4 296.0
C33 C32 C30 H30 318.2 179.3
C30 C32 C33 C37 180.3 180.8
C33 C32 C37 H371 0.4 180.0
C33 C32 C37 H372 180.4 0.1
H331 C33 C32 H332 240.0 119.7
H331 C33 C32 H333 120.0 239.4
H332 C33 C32 H333 240.0 119.7
H371 C37 C32 C33 0.4 180.0
C32 C37 H371 H372 180.0 180.1
H372 C37 C32 C33 180.4 0.1
C32 C37 H372 H371 180.0 179.9
C32 C33 H331 H332 120.0 237.6
C32 C33 H331 H333 240.0 121.9
H332 C33 H331 H333 120.0 244.3
C32 C33 H332 H331 240.0 121.7
C32 C33 H332 H333 120.0 238.3
H331 C33 H332 H333 240.0 116.6
C32 C33 H333 H331 120.0 238.1
C32 C33 H333 H332 240.0 122.4
H331 C33 H333 H332 120.0 244.3
C13 N29 C30 H30 320.9 30.0
C30 N29 C13 H29 180.0 182.8
O18 C13 N29 C12 178.4 181.1
N29 C13 C12 C16 10.5 301.0
N29 C13 C12 N30   175.0
N29 C13 C12 H121 153.1 61.1
H29 N29 C30 H30 140.9 212.8
C30 N29 H29 C13 180.0 177.3
H29 N29 C13 O18 144.8 177.2
H29 N29 C13 C12 326.3 356.1
O18 C13 N29 H29 144.8 177.2
N29 C13 O18 C12 181.7 178.8
O18 C13 C12 C16 192.2 119.9
O18 C13 C12 N30   354.0
O18 C13 C12 H121 334.7 240.0
C12 C13 N29 H29 326.3 356.1
N29 C13 C12 O18 178.4 181.1
C16 C12 C13 N30   125.9
C16 C12 C13 H121 217.4 239.9
C13 C12 C16 S 305.3 299.0
C13 C12 C16 H161 65.3 60.0
C13 C12 C16 H162 186.0 178.6
N30 C12 C13 H121   114.0
C13 C12 N30 C25   214.7
C13 C12 N30 H30N   35.4
C13 C12 C16 N30   236.0
C13 C12 C16 H121 157.2 119.5
N30 C12 C16 H121   243.5
C16 C12 N30 C25   88.2
C16 C12 N30 H30N   269.0
S C16 C12 H161 240.0 239.0
S C16 C12 H162 119.3 120.4
C12 C16 S HS 187.5 132.5
H161 C16 C12 H162 239.3 241.4
C13 C12 N30 C16   126.5
C13 C12 N30 H121   244.8
C16 C12 N30 H121   118.3
N30 C12 C16 S   63.1
N30 C12 C16 H161   184.0
N30 C12 C16 H162   302.6
C25 N30 C12 H30N   179.3
C12 N30 C25 O25   0.1
C12 N30 C25 C24   180.1
C13 C12 H121 C16 214.7 237.0
C13 C12 H121 N30   116.2
C16 C12 H121 N30   239.2
H121 C12 C16 S 148.1 179.5
H121 C12 C16 H161 268.1 300.5
H121 C12 C16 H162 28.8 59.1
H121 C12 N30 C25   329.9
H121 C12 N30 H30N   150.7
S C16 C12 N30   63.1
S C16 C12 H121 148.1 179.5
C12 C16 S H161 120.0 122.7
C12 C16 S H162 240.7 238.2
H161 C16 S H162 120.7 115.5
H161 C16 C12 N30   184.0
H161 C16 C12 H121 268.1 300.5
C12 C16 H161 S 238.6 235.4
C12 C16 H161 H162 119.3 120.0
S C16 H161 H162 240.7 244.7
H161 C16 S HS 67.5 9.8
H162 C16 C12 N30   302.6
H162 C16 C12 H121 28.8 59.1
C12 C16 H162 S 120.9 124.2
C12 C16 H162 H161 240.5 239.5
S C16 H162 H161 119.5 115.4
H162 C16 S HS 306.8 254.3
HS S C16 H161 67.5 9.8
HS S C16 H162 306.8 254.3
C25 N30 C12 H121   329.9
C12 N30 C25 H30N   180.8
O25 C25 N30 C24   180.0
N30 C25 C24 C23   180.0
N30 C25 C24 H241   58.4
N30 C25 C24 H242   301.7
H30N N30 C12 H121   150.7
C12 N30 H30N C25   179.3
H30N N30 C25 O25   179.3
H30N N30 C25 C24   359.3
O25 C25 N30 H30N   179.3
N30 C25 O25 C24   180.0
O25 C25 C24 C23   360.0
O25 C25 C24 H241   238.4
O25 C25 C24 H242   121.7
C24 C25 N30 H30N   359.3
N30 C25 C24 O25   180.0
C23 C24 C25 H241   121.6
C23 C24 C25 H242   238.3
C25 C24 C23 C22   181.8
C25 C24 C23 H231   60.1
C25 C24 C23 H232   303.5
H241 C24 C25 H242   116.7
C25 C24 C23 H241   239.4
C25 C24 C23 H242   120.7
H241 C24 C23 H242   241.3
C22 C23 C24 H231   121.7
C22 C23 C24 H232   238.3
C24 C23 C22 C21   177.8
C24 C23 C22 H221   300.1
C24 C23 C22 H222   55.4
H231 C23 C24 H232   116.6
C25 C24 H241 C23   123.1
C25 C24 H241 H242   243.1
C23 C24 H241 H242   120.0
H241 C24 C23 C22   302.4
H241 C24 C23 H231   180.6
H241 C24 C23 H232   64.0
C25 C24 H242 C23   236.8
C25 C24 H242 H241   116.9
C23 C24 H242 H241   240.1
H242 C24 C23 C22   61.1
H242 C24 C23 H231   299.4
H242 C24 C23 H232   182.8
C22 C23 C24 H241   302.4
C22 C23 C24 H242   61.1
C24 C23 C22 H231   238.8
C24 C23 C22 H232   121.2
H231 C23 C22 H232   242.4
C21 C22 C23 H221   237.7
C21 C22 C23 H222   122.4
C23 C22 C21 N31   63.8
C23 C22 C21 C20   302.2
C23 C22 C21 H211   183.0
H221 C22 C23 H222   244.7
H231 C23 C24 H241   180.6
H231 C23 C24 H242   299.4
C24 C23 H231 C22   122.3
C24 C23 H231 H232   241.9
C22 C23 H231 H232   119.5
H231 C23 C22 C21   299.0
H231 C23 C22 H221   61.3
H231 C23 C22 H222   176.6
H232 C23 C24 H241   64.0
H232 C23 C24 H242   182.8
C24 C23 H232 C22   237.7
C24 C23 H232 H231   118.1
C22 C23 H232 H231   240.4
H232 C23 C22 C21   56.6
H232 C23 C22 H221   178.9
H232 C23 C22 H222   294.2
C21 C22 C23 H231   299.0
C21 C22 C23 H232   56.6
C23 C22 C21 H221   122.3
C23 C22 C21 H222   237.9
H221 C22 C21 H222   115.6
N31 C21 C22 C20   121.6
N31 C21 C22 H211   240.8
C22 C21 N31 H311   269.0
C22 C21 N31 H312   102.4
C20 C21 C22 H211   119.2
C22 C21 C20 O20   119.7
C22 C21 C20 O21   299.0
H221 C22 C23 H231   61.3
H221 C22 C23 H232   178.9
C23 C22 H221 C21   234.4
C23 C22 H221 H222   116.9
C21 C22 H221 H222   242.5
H221 C22 C21 N31   301.5
H221 C22 C21 C20   179.9
H221 C22 C21 H211   60.7
H222 C22 C23 H231   176.6
H222 C22 C23 H232   294.2
C23 C22 H222 C21   125.6
C23 C22 H222 H221   242.9
C21 C22 H222 H221   117.3
H222 C22 C21 N31   186.0
H222 C22 C21 C20   64.4
H222 C22 C21 H211   305.2
N31 C21 C22 H221   301.5
N31 C21 C22 H222   186.0
C22 C21 N31 C20   236.1
C22 C21 N31 H211   120.1
C20 C21 N31 H211   243.9
N31 C21 C20 O20   356.2
N31 C21 C20 O21   175.5
H311 N31 C21 H312   166.6
C20 C21 C22 H221   179.9
C20 C21 C22 H222   64.4
C22 C21 C20 N31   123.4
C22 C21 C20 H211   239.7
N31 C21 C20 H211   116.3
C20 C21 N31 H311   32.8
C20 C21 N31 H312   226.3
O20 C20 C21 O21   180.7
C21 C20 O21 H21   180.8
H211 C21 C22 H221   60.7
H211 C21 C22 H222   305.2
C22 C21 H211 N31   238.6
C22 C21 H211 C20   122.0
N31 C21 H211 C20   243.4
H211 C21 N31 H311   148.9
H211 C21 N31 H312   342.4
H211 C21 C20 O20   239.9
H211 C21 C20 O21   59.2
H311 N31 C21 C20   32.8
H311 N31 C21 H211   148.9
C21 N31 H311 H312   194.1
H312 N31 C21 C20   226.3
H312 N31 C21 H211   342.4
C21 N31 H312 H311   165.9
O20 C20 C21 H211   239.9
C21 C20 O20 O21   179.2
O20 C20 O21 H21   0.1
O21 C20 C21 H211   59.2
C21 C20 O21 O20   180.7