PDB Chemical Component CDE
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CDE
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.441 |
1.468 |
| N |
H |
1.019 |
1.008 |
| N |
H2 |
1.021 |
1.009 |
| CA |
CB |
1.521 |
1.529 |
| CA |
C |
1.511 |
1.530 |
| CA |
HA |
1.115 |
1.089 |
| CB |
CG1 |
1.513 |
1.529 |
| CB |
CG2 |
1.481 |
1.529 |
| CB |
HB |
1.116 |
1.090 |
| CG1 |
HG11 |
1.115 |
1.090 |
| CG1 |
HG12 |
1.115 |
1.091 |
| CG1 |
HG13 |
1.114 |
1.089 |
| CG2 |
HG21 |
1.115 |
1.091 |
| CG2 |
HG22 |
1.115 |
1.089 |
| CG2 |
HG23 |
1.116 |
1.090 |
| C |
HC1 |
1.114 |
1.090 |
| C |
HC2 |
1.115 |
1.091 |
| C |
HC3 |
1.115 |
1.089 |
Bond Angles for CDE
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
110.9 |
106.7 |
| CA |
N |
H2 |
111.7 |
106.7 |
| N |
CA |
CB |
110.8 |
109.5 |
| N |
CA |
C |
106.1 |
109.5 |
| N |
CA |
HA |
111.1 |
109.5 |
| H |
N |
H2 |
111.7 |
106.7 |
| CB |
CA |
C |
110.4 |
109.5 |
| CB |
CA |
HA |
106.9 |
109.5 |
| CA |
CB |
CG1 |
111.3 |
109.5 |
| CA |
CB |
CG2 |
108.6 |
109.5 |
| CA |
CB |
HB |
108.8 |
109.5 |
| C |
CA |
HA |
111.6 |
109.5 |
| CA |
C |
HC1 |
106.1 |
109.5 |
| CA |
C |
HC2 |
113.4 |
109.5 |
| CA |
C |
HC3 |
113.4 |
109.5 |
| CG1 |
CB |
CG2 |
109.4 |
109.4 |
| CG1 |
CB |
HB |
108.0 |
109.5 |
| CB |
CG1 |
HG11 |
111.3 |
109.6 |
| CB |
CG1 |
HG12 |
111.5 |
109.4 |
| CB |
CG1 |
HG13 |
111.5 |
109.5 |
| CG2 |
CB |
HB |
110.7 |
109.4 |
| CB |
CG2 |
HG21 |
108.6 |
109.5 |
| CB |
CG2 |
HG22 |
112.6 |
109.5 |
| CB |
CG2 |
HG23 |
112.5 |
109.5 |
| HG11 |
CG1 |
HG12 |
111.5 |
109.4 |
| HG11 |
CG1 |
HG13 |
111.6 |
109.5 |
| HG12 |
CG1 |
HG13 |
98.9 |
109.4 |
| HG21 |
CG2 |
HG22 |
112.6 |
109.4 |
| HG21 |
CG2 |
HG23 |
112.5 |
109.5 |
| HG22 |
CG2 |
HG23 |
97.9 |
109.5 |
| HC1 |
C |
HC2 |
113.5 |
109.5 |
| HC1 |
C |
HC3 |
113.5 |
109.5 |
| HC2 |
C |
HC3 |
97.0 |
109.4 |
Torsion Angles for CDE
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.3 |
113.8 |
| CB |
CA |
N |
C |
240.1 |
240.0 |
| CB |
CA |
N |
HA |
118.7 |
120.0 |
| N |
CA |
CB |
CG1 |
134.9 |
300.1 |
| N |
CA |
CB |
CG2 |
255.4 |
60.0 |
| N |
CA |
CB |
HB |
16.0 |
180.0 |
| C |
CA |
N |
HA |
238.6 |
240.0 |
| N |
CA |
C |
HC1 |
180.0 |
60.0 |
| N |
CA |
C |
HC2 |
305.3 |
180.0 |
| N |
CA |
C |
HC3 |
54.7 |
300.0 |
| CA |
N |
H |
H2 |
234.7 |
246.2 |
| H |
N |
CA |
CB |
180.0 |
53.8 |
| H |
N |
CA |
C |
299.9 |
173.8 |
| H |
N |
CA |
HA |
61.3 |
293.8 |
| CA |
N |
H2 |
H |
124.9 |
113.8 |
| H2 |
N |
CA |
CB |
54.7 |
299.9 |
| H2 |
N |
CA |
C |
174.6 |
60.0 |
| H2 |
N |
CA |
HA |
296.0 |
180.0 |
| CB |
CA |
N |
H |
180.0 |
53.8 |
| CB |
CA |
N |
H2 |
54.7 |
299.9 |
| N |
CA |
CB |
C |
117.3 |
120.0 |
| N |
CA |
CB |
HA |
238.8 |
240.0 |
| C |
CA |
CB |
HA |
121.5 |
120.0 |
| CB |
CA |
C |
HC1 |
300.2 |
180.0 |
| CB |
CA |
C |
HC2 |
65.4 |
300.0 |
| CB |
CA |
C |
HC3 |
174.9 |
60.0 |
| CG1 |
CB |
CA |
CG2 |
239.5 |
240.0 |
| CG1 |
CB |
CA |
HB |
118.9 |
120.1 |
| CA |
CB |
CG1 |
HG11 |
180.0 |
180.0 |
| CA |
CB |
CG1 |
HG12 |
305.3 |
300.0 |
| CA |
CB |
CG1 |
HG13 |
54.7 |
59.9 |
| CG2 |
CB |
CA |
HB |
239.4 |
240.0 |
| CA |
CB |
CG2 |
HG21 |
180.0 |
300.0 |
| CA |
CB |
CG2 |
HG22 |
305.3 |
60.0 |
| CA |
CB |
CG2 |
HG23 |
54.8 |
180.0 |
| C |
CA |
N |
H |
299.9 |
173.8 |
| C |
CA |
N |
H2 |
174.6 |
60.0 |
| N |
CA |
C |
CB |
239.8 |
240.0 |
| N |
CA |
C |
HA |
121.1 |
120.0 |
| CB |
CA |
C |
HA |
241.3 |
240.0 |
| C |
CA |
CB |
CG1 |
17.6 |
180.0 |
| C |
CA |
CB |
CG2 |
138.1 |
300.0 |
| C |
CA |
CB |
HB |
258.7 |
60.0 |
| HC1 |
C |
CA |
HC2 |
234.8 |
240.0 |
| HC1 |
C |
CA |
HC3 |
125.3 |
120.1 |
| HC2 |
C |
CA |
HC3 |
250.6 |
240.0 |
| HA |
CA |
N |
H |
61.3 |
293.8 |
| HA |
CA |
N |
H2 |
296.0 |
180.0 |
| N |
CA |
HA |
CB |
121.0 |
120.0 |
| N |
CA |
HA |
C |
241.8 |
240.0 |
| CB |
CA |
HA |
C |
120.8 |
120.0 |
| HA |
CA |
CB |
CG1 |
256.1 |
60.0 |
| HA |
CA |
CB |
CG2 |
16.6 |
180.0 |
| HA |
CA |
CB |
HB |
137.2 |
300.0 |
| HA |
CA |
C |
HC1 |
58.9 |
300.0 |
| HA |
CA |
C |
HC2 |
184.2 |
60.0 |
| HA |
CA |
C |
HC3 |
293.6 |
180.0 |
| CG1 |
CB |
CA |
C |
17.6 |
180.0 |
| CG1 |
CB |
CA |
HA |
256.1 |
60.0 |
| CA |
CB |
CG1 |
CG2 |
120.0 |
120.0 |
| CA |
CB |
CG1 |
HB |
240.6 |
239.9 |
| CG2 |
CB |
CG1 |
HB |
120.6 |
119.9 |
| CG1 |
CB |
CG2 |
HG21 |
301.7 |
60.0 |
| CG1 |
CB |
CG2 |
HG22 |
67.0 |
180.0 |
| CG1 |
CB |
CG2 |
HG23 |
176.5 |
300.0 |
| HG11 |
CG1 |
CB |
HG12 |
234.8 |
240.0 |
| HG11 |
CG1 |
CB |
HG13 |
125.3 |
120.1 |
| HG12 |
CG1 |
CB |
HG13 |
250.5 |
240.1 |
| CG2 |
CB |
CA |
C |
138.1 |
300.0 |
| CG2 |
CB |
CA |
HA |
16.6 |
180.0 |
| CA |
CB |
CG2 |
CG1 |
238.3 |
240.0 |
| CA |
CB |
CG2 |
HB |
119.4 |
120.0 |
| CG1 |
CB |
CG2 |
HB |
241.1 |
240.0 |
| CG2 |
CB |
CG1 |
HG11 |
60.0 |
60.0 |
| CG2 |
CB |
CG1 |
HG12 |
185.2 |
180.0 |
| CG2 |
CB |
CG1 |
HG13 |
294.7 |
299.9 |
| HG21 |
CG2 |
CB |
HG22 |
234.7 |
240.0 |
| HG21 |
CG2 |
CB |
HG23 |
125.2 |
120.0 |
| HG22 |
CG2 |
CB |
HG23 |
250.5 |
240.0 |
| HB |
CB |
CA |
C |
258.7 |
60.0 |
| HB |
CB |
CA |
HA |
137.2 |
300.0 |
| CA |
CB |
HB |
CG1 |
121.0 |
120.1 |
| CA |
CB |
HB |
CG2 |
240.7 |
240.0 |
| CG1 |
CB |
HB |
CG2 |
119.8 |
119.9 |
| HB |
CB |
CG1 |
HG11 |
299.4 |
300.1 |
| HB |
CB |
CG1 |
HG12 |
64.6 |
60.1 |
| HB |
CB |
CG1 |
HG13 |
174.1 |
180.0 |
| HB |
CB |
CG2 |
HG21 |
60.5 |
180.0 |
| HB |
CB |
CG2 |
HG22 |
185.9 |
300.0 |
| HB |
CB |
CG2 |
HG23 |
295.4 |
60.0 |
| HG11 |
CG1 |
CB |
CG2 |
60.0 |
60.0 |
| HG11 |
CG1 |
CB |
HB |
299.4 |
300.1 |
| CB |
CG1 |
HG11 |
HG12 |
125.2 |
120.0 |
| CB |
CG1 |
HG11 |
HG13 |
234.7 |
239.9 |
| HG12 |
CG1 |
HG11 |
HG13 |
109.5 |
119.9 |
| HG12 |
CG1 |
CB |
CG2 |
185.2 |
180.0 |
| HG12 |
CG1 |
CB |
HB |
64.6 |
60.1 |
| CB |
CG1 |
HG12 |
HG11 |
234.9 |
239.9 |
| CB |
CG1 |
HG12 |
HG13 |
117.4 |
120.0 |
| HG11 |
CG1 |
HG12 |
HG13 |
242.5 |
240.0 |
| HG13 |
CG1 |
CB |
CG2 |
294.7 |
299.9 |
| HG13 |
CG1 |
CB |
HB |
174.1 |
180.0 |
| CB |
CG1 |
HG13 |
HG11 |
125.2 |
120.2 |
| CB |
CG1 |
HG13 |
HG12 |
242.6 |
240.1 |
| HG11 |
CG1 |
HG13 |
HG12 |
117.5 |
119.9 |
| HG21 |
CG2 |
CB |
HB |
60.5 |
180.0 |
| CB |
CG2 |
HG21 |
HG22 |
125.3 |
120.0 |
| CB |
CG2 |
HG21 |
HG23 |
234.8 |
240.0 |
| HG22 |
CG2 |
HG21 |
HG23 |
109.5 |
120.0 |
| HG22 |
CG2 |
CB |
HB |
185.9 |
300.0 |
| CB |
CG2 |
HG22 |
HG21 |
236.9 |
240.0 |
| CB |
CG2 |
HG22 |
HG23 |
118.5 |
120.0 |
| HG21 |
CG2 |
HG22 |
HG23 |
241.6 |
240.0 |
| HG23 |
CG2 |
CB |
HB |
295.4 |
60.0 |
| CB |
CG2 |
HG23 |
HG21 |
123.0 |
120.0 |
| CB |
CG2 |
HG23 |
HG22 |
241.5 |
239.9 |
| HG21 |
CG2 |
HG23 |
HG22 |
118.5 |
119.9 |
| HC1 |
C |
CA |
HA |
58.9 |
300.0 |
| CA |
C |
HC1 |
HC2 |
125.2 |
120.0 |
| CA |
C |
HC1 |
HC3 |
234.7 |
240.0 |
| HC2 |
C |
HC1 |
HC3 |
109.5 |
120.0 |
| HC2 |
C |
CA |
HA |
184.2 |
60.0 |
| CA |
C |
HC2 |
HC1 |
238.8 |
240.0 |
| CA |
C |
HC2 |
HC3 |
119.3 |
120.0 |
| HC1 |
C |
HC2 |
HC3 |
240.5 |
240.0 |
| HC3 |
C |
CA |
HA |
293.6 |
180.0 |
| CA |
C |
HC3 |
HC1 |
121.2 |
120.0 |
| CA |
C |
HC3 |
HC2 |
240.7 |
240.0 |
| HC1 |
C |
HC3 |
HC2 |
119.4 |
120.0 |