PDB Chemical Component CDB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CDB

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C2	1.413	1.318
N1	C6	1.386	1.319
N1	H1	1.020	0.970
C2	C3	1.459	1.383
C2	C11	1.532	1.507
C3	C4	1.450	1.386
C3	H3	1.103	1.080
C4	C5	1.457	1.386
C4	H4	1.104	1.080
C5	C6	1.451	1.382
C5	H5	1.103	1.080
C6	H6	1.103	1.080
C11	C12	1.526	1.530
C11	F13	1.357	1.398
C11	F1	1.342	1.399
C12	N18	1.476	1.465
C12	H121	1.115	1.091
C12	H122	1.115	1.090
N18	C21	1.379	1.389
N18	H18	1.020	0.970
C21	C22	1.498	1.467
C21	N26	1.361	1.315
C22	N23	1.391	1.352
C22	O28	1.233	1.219
N23	C24	1.446	1.364
N23	C33	1.484	1.464
C24	C25	1.410	1.350
C24	C29	1.481	1.507
C25	N26	1.337	1.333
C25	H25	1.102	1.080
N26	H26	1.019	0.970
C29	H291	1.115	1.089
C29	H292	1.116	1.090
C29	H293	1.115	1.091
C33	C34	1.522	1.507
C33	H331	1.115	1.091
C33	H332	1.115	1.089
C34	N37	1.364	1.348
C34	O38	1.226	1.212
N37	C39	1.479	1.465
N37	H37	1.019	0.971
C39	C40	1.530	1.507
C39	H391	1.115	1.091
C39	H392	1.115	1.090
C40	C43	1.420	1.384
C40	N46	1.387	1.319
C43	C44	1.438	1.388
C43	F47	1.340	1.351
C44	C45	1.442	1.386
C44	C1	1.488	1.508
C45	C50	1.438	1.382
C45	H45	1.103	1.080
N46	C50	1.387	1.319
C50	H50	1.103	1.080
C1	H11	1.115	1.090
C1	H12	1.114	1.090
C1	H13	1.116	1.090

Bond Angles for CDB

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	124.9	121.7
C2	N1	H1	118.6	119.2
N1	C2	C3	120.5	120.8
N1	C2	C11	117.5	119.6
C6	N1	H1	116.5	119.1
N1	C6	C5	116.5	120.7
N1	C6	H6	119.6	119.6
C3	C2	C11	121.8	119.6
C2	C3	C4	116.1	119.2
C2	C3	H3	122.2	120.4
C2	C11	C12	112.3	109.5
C2	C11	F13	114.3	109.5
C2	C11	F1	107.9	109.5
C4	C3	H3	121.6	120.5
C3	C4	C5	121.1	118.4
C3	C4	H4	119.2	120.8
C5	C4	H4	119.7	120.8
C4	C5	C6	120.8	119.2
C4	C5	H5	119.8	120.5
C6	C5	H5	119.4	120.4
C5	C6	H6	123.9	119.6
C12	C11	F13	108.5	109.4
C12	C11	F1	105.4	109.4
C11	C12	N18	113.0	109.5
C11	C12	H121	110.9	109.5
C11	C12	H122	110.9	109.5
F13	C11	F1	108.1	109.5
N18	C12	H121	110.8	109.5
N18	C12	H122	110.9	109.5
C12	N18	C21	125.0	120.0
C12	N18	H18	106.7	120.0
H121	C12	H122	99.5	109.4
C21	N18	H18	106.7	120.0
N18	C21	C22	117.8	120.4
N18	C21	N26	122.2	120.4
C22	C21	N26	119.9	119.1
C21	C22	N23	116.2	118.4
C21	C22	O28	122.7	120.8
C21	N26	C25	123.3	120.8
C21	N26	H26	119.3	119.6
N23	C22	O28	121.1	120.8
C22	N23	C24	121.0	119.1
C22	N23	C33	118.1	120.4
C24	N23	C33	120.9	120.5
N23	C24	C25	119.2	120.9
N23	C24	C29	123.0	119.6
N23	C33	C34	109.8	109.5
N23	C33	H331	112.1	109.5
N23	C33	H332	112.1	109.5
C25	C24	C29	117.8	119.5
C24	C25	N26	120.3	121.7
C24	C25	H25	122.5	119.1
C24	C29	H291	123.0	109.5
C24	C29	H292	107.4	109.5
C24	C29	H293	107.4	109.4
N26	C25	H25	117.2	119.2
C25	N26	H26	117.4	119.6
H291	C29	H292	107.4	109.5
H291	C29	H293	107.4	109.5
H292	C29	H293	102.3	109.4
C34	C33	H331	112.1	109.5
C34	C33	H332	112.1	109.5
C33	C34	N37	115.8	120.0
C33	C34	O38	120.2	120.0
H331	C33	H332	98.3	109.4
N37	C34	O38	124.0	120.0
C34	N37	C39	120.7	120.0
C34	N37	H37	115.6	120.0
C39	N37	H37	123.7	120.0
N37	C39	C40	113.8	109.5
N37	C39	H391	110.7	109.4
N37	C39	H392	110.7	109.5
C40	C39	H391	110.6	109.5
C40	C39	H392	110.6	109.5
C39	C40	C43	120.1	119.6
C39	C40	N46	121.9	119.6
H391	C39	H392	99.6	109.5
C43	C40	N46	118.0	120.8
C40	C43	C44	119.9	119.1
C40	C43	F47	118.5	120.4
C40	N46	C50	124.5	121.7
C44	C43	F47	121.6	120.5
C43	C44	C45	120.4	118.4
C43	C44	C1	120.7	120.8
C45	C44	C1	118.8	120.8
C44	C45	C50	117.8	119.2
C44	C45	H45	121.2	120.4
C44	C1	H11	120.7	109.5
C44	C1	H12	108.2	109.5
C44	C1	H13	108.2	109.4
C50	C45	H45	121.0	120.4
C45	C50	N46	119.3	120.8
C45	C50	H50	122.1	119.6
N46	C50	H50	118.6	119.6
H11	C1	H12	108.2	109.5
H11	C1	H13	108.1	109.5
H12	C1	H13	101.8	109.5

Torsion Angles for CDB

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	N1	C2	H1	179.9	179.5
C2	N1	C6	C5	1.4	0.4
C2	N1	C6	H6	181.4	180.2
C3	C2	N1	C11	184.4	179.8
N1	C2	C3	C4	0.7	0.2
N1	C2	C3	H3	180.7	180.2
N1	C2	C11	C12	290.9	89.8
N1	C2	C11	F13	166.8	329.8
N1	C2	C11	F1	46.6	209.7
C2	N1	C6	H1	180.1	180.5
C6	N1	C2	C3	357.9	359.6
C6	N1	C2	C11	173.5	179.8
C4	C5	C6	N1	0.6	359.8
N1	C6	C5	H5	180.7	179.8
C5	C6	N1	H6	180.0	180.2
C2	N1	H1	C6	179.9	179.6
H1	N1	C2	C3	178.0	180.0
H1	N1	C2	C11	353.6	0.2
H1	N1	C6	C5	181.3	180.0
H1	N1	C6	H6	1.3	359.8
C3	C2	N1	C6	357.9	359.6
C3	C2	N1	H1	178.0	180.0
N1	C2	C3	C11	175.4	180.2
C3	C2	C11	C12	106.4	270.0
C3	C2	C11	F13	342.3	150.0
C3	C2	C11	F1	222.1	29.9
C4	C3	C2	H3	180.0	180.0
C2	C3	C4	C5	1.2	0.0
C2	C3	C4	H4	181.1	180.0
C11	C2	N1	C6	173.5	179.8
C11	C2	N1	H1	353.6	0.2
N1	C2	C11	C3	184.5	179.8
C11	C2	C3	C4	185.3	180.0
C11	C2	C3	H3	5.3	0.0
C12	C11	C2	F13	124.1	120.0
C12	C11	C2	F1	244.3	240.0
C2	C11	C12	N18	288.1	180.0
C2	C11	C12	H121	53.3	60.0
C2	C11	C12	H122	162.9	300.0
F13	C11	C2	F1	120.2	120.1
C4	C3	C2	C11	185.3	180.0
C2	C3	C4	H3	180.0	180.0
C5	C4	C3	H4	180.1	180.0
C3	C4	C5	C6	358.1	360.0
C3	C4	C5	H5	178.1	180.0
H3	C3	C2	C11	5.3	0.0
C2	C3	H3	C4	180.0	180.0
H3	C3	C4	C5	181.2	180.0
H3	C3	C4	H4	1.1	360.0
N1	C6	C5	C4	0.6	359.8
C5	C4	C3	H3	181.2	180.0
C3	C4	C5	H4	179.9	180.0
C6	C5	C4	H5	180.0	180.0
C4	C5	C6	H6	180.6	180.0
H4	C4	C3	H3	1.1	360.0
C3	C4	H4	C5	180.1	180.0
H4	C4	C5	C6	178.2	180.0
H4	C4	C5	H5	358.1	360.0
C5	C6	N1	H1	181.3	180.0
N1	C6	C5	H6	180.0	179.8
C6	C5	C4	H4	178.2	180.0
C4	C5	C6	H5	180.0	180.0
H5	C5	C4	H4	358.1	360.0
C4	C5	H5	C6	180.0	180.0
H5	C5	C6	H6	0.7	0.0
H6	C6	N1	H1	1.3	359.8
N1	C6	H6	C5	180.0	180.2
H6	C6	C5	H5	0.7	0.0
C2	C11	C12	F13	232.8	239.9
C2	C11	C12	F1	117.2	120.0
F13	C11	C12	F1	244.4	240.1
N18	C12	C11	H121	234.8	120.0
N18	C12	C11	H122	125.2	240.0
C11	C12	N18	C21	101.7	180.0
C11	C12	N18	H18	336.4	359.9
H121	C12	C11	H122	250.4	120.0
C2	C11	F13	C12	126.1	120.0
C2	C11	F13	F1	239.9	239.9
C12	C11	F13	F1	113.8	119.9
F13	C11	C12	N18	55.3	300.1
F13	C11	C12	H121	180.6	180.0
F13	C11	C12	H122	290.1	60.1
C2	C11	F1	C12	239.9	240.0
C2	C11	F1	F13	124.0	120.1
C12	C11	F1	F13	244.2	240.1
F1	C11	C12	N18	170.9	60.0
F1	C11	C12	H121	296.1	300.0
F1	C11	C12	H122	45.7	180.0
N18	C12	C11	F13	55.3	300.1
N18	C12	C11	F1	170.9	60.0
C11	C12	N18	H121	125.3	240.0
C11	C12	N18	H122	234.7	120.0
H121	C12	N18	H122	109.5	240.1
C21	N18	C12	H18	125.3	180.1
C12	N18	C21	C22	186.1	180.0
C12	N18	C21	N26	4.6	360.0
H121	C12	C11	F13	180.6	180.0
H121	C12	C11	F1	296.1	300.0
C11	C12	H121	N18	233.6	120.0
C11	C12	H121	H122	116.9	240.0
N18	C12	H121	H122	243.3	120.0
H121	C12	N18	C21	336.4	300.1
H121	C12	N18	H18	211.2	120.0
H122	C12	C11	F13	290.1	60.1
H122	C12	C11	F1	45.7	180.0
C11	C12	H122	N18	126.4	240.0
C11	C12	H122	H121	243.1	120.0
N18	C12	H122	H121	116.7	240.0
H122	C12	N18	C21	227.0	60.0
H122	C12	N18	H18	101.7	239.9
C21	N18	C12	H121	336.4	300.1
C21	N18	C12	H122	227.0	60.0
C12	N18	C21	H18	234.7	179.9
C22	C21	N18	N26	181.5	180.0
N18	C21	C22	N23	177.8	179.7
N18	C21	C22	O28	357.8	360.0
N18	C21	N26	C25	179.9	180.1
N18	C21	N26	H26	359.9	360.0
H18	N18	C12	H121	211.2	120.0
H18	N18	C12	H122	101.7	239.9
C12	N18	H18	C21	135.7	180.1
H18	N18	C21	C22	311.3	0.1
H18	N18	C21	N26	129.8	180.0
C22	C21	N18	H18	311.3	0.1
N18	C21	C22	N26	178.6	180.0
C22	C21	N26	C25	358.4	0.0
C22	C21	N26	H26	178.4	179.9
N23	C22	C21	O28	180.0	179.7
C21	C22	N23	C24	2.4	0.5
C21	C22	N23	C33	180.3	180.0
N26	C21	N18	H18	129.8	180.0
N18	C21	N26	C22	181.5	180.0
N26	C21	C22	N23	359.3	359.7
N26	C21	C22	O28	179.2	180.0
C24	C25	N26	C21	2.1	0.0
C21	N26	C25	H25	182.2	180.0
C25	N26	C21	H26	180.0	180.1
N23	C22	C21	N26	359.3	359.7
C21	C22	N23	O28	180.0	180.3
C24	N23	C22	C33	182.2	180.5
C22	N23	C24	C25	358.0	359.5
C22	N23	C24	C29	178.5	179.7
C22	N23	C33	C34	306.5	90.0
C22	N23	C33	H331	71.8	210.0
C22	N23	C33	H332	181.3	329.9
O28	C22	C21	N26	179.2	180.0
C21	C22	O28	N23	180.1	179.7
O28	C22	N23	C24	182.5	180.2
O28	C22	N23	C33	0.3	359.7
C24	N23	C22	O28	182.5	180.2
C22	N23	C24	C33	177.7	179.5
C24	N23	C33	C34	124.3	269.5
C24	N23	C33	H331	249.6	29.5
C24	N23	C33	H332	359.1	149.5
C25	C24	N23	C29	179.5	179.8
N23	C24	C25	N26	359.7	0.2
N23	C24	C25	H25	179.7	180.2
N23	C24	C29	H291	180.0	179.7
N23	C24	C29	H292	305.3	299.8
N23	C24	C29	H293	54.7	59.8
C33	N23	C22	O28	0.3	359.7
C22	N23	C33	C24	182.2	180.5
C33	N23	C24	C25	180.2	180.0
C33	N23	C24	C29	0.7	0.2
C34	C33	N23	H331	234.8	240.0
C34	C33	N23	H332	125.2	120.1
N23	C33	C34	N37	136.7	180.0
N23	C33	C34	O38	315.9	0.0
H331	C33	N23	H332	250.5	240.0
C21	N26	C25	C24	2.1	0.0
C25	C24	N23	C33	180.2	180.0
N23	C24	C25	C29	180.5	180.2
C25	C24	C29	H291	0.5	359.9
C25	C24	C29	H292	125.8	120.0
C25	C24	C29	H293	235.2	239.9
N26	C25	C24	H25	180.0	180.0
C24	C25	N26	H26	182.1	180.1
C29	C24	N23	C33	0.7	0.2
N23	C24	C29	C25	179.5	179.8
C29	C24	C25	N26	179.2	180.0
C29	C24	C25	H25	359.2	0.0
H291	C29	C24	H292	234.7	239.9
H291	C29	C24	H293	125.3	120.0
H292	C29	C24	H293	250.6	240.1
C21	N26	C25	H26	180.0	179.9
N26	C25	C24	C29	179.2	180.0
C24	C25	N26	H25	180.0	180.0
H25	C25	C24	C29	359.2	0.0
C24	C25	H25	N26	180.0	180.0
H25	C25	N26	H26	2.1	0.1
C21	N26	H26	C25	180.0	180.1
H26	N26	C25	H25	2.1	0.1
C24	C29	H291	H292	125.3	120.1
C24	C29	H291	H293	234.7	240.0
H292	C29	H291	H293	109.4	120.0
C24	C29	H292	H291	225.8	239.9
C24	C29	H292	H293	112.9	119.9
H291	C29	H292	H293	247.1	240.0
C24	C29	H293	H291	134.2	120.0
C24	C29	H293	H292	247.1	240.0
H291	C29	H293	H292	112.9	120.0
N23	C33	C34	H331	125.3	120.0
N23	C33	C34	H332	234.7	240.0
H331	C33	C34	H332	109.4	120.0
N37	C34	C33	O38	180.9	180.0
C33	C34	N37	C39	182.7	180.0
C33	C34	N37	H37	2.7	0.0
N23	C33	H331	C34	236.0	240.0
N23	C33	H331	H332	118.1	120.0
C34	C33	H331	H332	242.0	240.0
H331	C33	C34	N37	11.5	60.0
H331	C33	C34	O38	190.6	240.0
N23	C33	H332	C34	124.0	120.0
N23	C33	H332	H331	241.9	240.0
C34	C33	H332	H331	118.0	120.0
H332	C33	C34	N37	262.0	300.0
H332	C33	C34	O38	81.2	120.1
N37	C34	C33	H331	11.5	60.0
N37	C34	C33	H332	262.0	300.0
C33	C34	N37	O38	179.1	180.0
C39	N37	C34	H37	180.0	180.0
C34	N37	C39	C40	127.2	180.0
C34	N37	C39	H391	252.4	300.0
C34	N37	C39	H392	1.9	60.0
O38	C34	C33	H331	190.6	240.0
O38	C34	C33	H332	81.2	120.1
C33	C34	O38	N37	180.9	180.0
O38	C34	N37	C39	3.6	360.0
O38	C34	N37	H37	183.6	180.0
C39	N37	C34	O38	3.6	360.0
C34	N37	C39	H37	180.1	180.0
C40	C39	N37	H391	234.7	240.0
C40	C39	N37	H392	125.3	120.0
N37	C39	C40	C43	49.2	269.7
N37	C39	C40	N46	230.2	90.0
H391	C39	N37	H392	250.5	240.0
H37	N37	C34	O38	183.6	180.0
C34	N37	H37	C39	179.9	180.0
H37	N37	C39	C40	307.1	0.0
H37	N37	C39	H391	72.4	120.0
H37	N37	C39	H392	181.8	240.0
C40	C39	N37	H37	307.1	0.0
N37	C39	C40	H391	125.3	120.0
N37	C39	C40	H392	234.7	240.0
H391	C39	C40	H392	109.4	120.0
C43	C40	C39	N46	179.0	179.7
C39	C40	C43	C44	181.5	179.7
C39	C40	C43	F47	1.4	0.3
C39	C40	N46	C50	178.3	180.0
H391	C39	N37	H37	72.4	120.0
N37	C39	H391	C40	233.0	240.0
N37	C39	H391	H392	116.5	120.0
C40	C39	H391	H392	243.5	240.0
H391	C39	C40	C43	283.9	149.7
H391	C39	C40	N46	104.9	330.0
H392	C39	N37	H37	181.8	240.0
N37	C39	H392	C40	127.0	120.0
N37	C39	H392	H391	243.5	240.0
C40	C39	H392	H391	116.5	120.0
H392	C39	C40	C43	174.5	29.7
H392	C39	C40	N46	355.5	210.0
C43	C40	C39	H391	283.9	149.7
C43	C40	C39	H392	174.5	29.7
C39	C40	C43	N46	180.9	180.4
C43	C40	N46	C50	359.3	0.4
C44	C43	C40	F47	180.1	179.4
C40	C43	C44	C45	0.1	0.6
C40	C43	C44	C1	180.6	180.3
N46	C40	C39	H391	104.9	330.0
N46	C40	C39	H392	355.5	210.0
C39	C40	N46	C43	179.0	179.6
N46	C40	C43	C44	0.6	359.4
N46	C40	C43	F47	180.5	180.0
C45	C50	N46	C40	0.2	359.9
C40	N46	C50	H50	180.1	180.0
C44	C43	C40	N46	0.6	359.4
C40	C43	C44	F47	179.9	180.6
C45	C44	C43	C1	179.5	180.3
C43	C44	C45	C50	359.3	359.7
C43	C44	C45	H45	179.4	179.7
C43	C44	C1	H11	179.9	270.3
C43	C44	C1	H12	305.3	30.3
C43	C44	C1	H13	54.8	150.3
F47	C43	C40	N46	180.5	180.0
C40	C43	F47	C44	180.1	179.4
F47	C43	C44	C45	180.2	180.0
F47	C43	C44	C1	0.7	359.7
C45	C44	C43	F47	180.2	180.0
C43	C44	C45	C1	180.4	179.7
C45	C44	C1	H11	0.4	90.0
C45	C44	C1	H12	125.7	210.0
C45	C44	C1	H13	235.2	330.0
C50	C45	C44	H45	180.0	179.9
C44	C45	C50	N46	0.5	0.0
C44	C45	C50	H50	180.6	180.0
C1	C44	C43	F47	0.7	359.7
C43	C44	C1	C45	179.6	180.3
C1	C44	C45	C50	178.9	180.0
C1	C44	C45	H45	358.9	0.0
H11	C1	C44	H12	234.6	240.0
H11	C1	C44	H13	125.1	120.0
H12	C1	C44	H13	250.5	240.0
C40	N46	C50	C45	0.2	359.9
C50	C45	C44	C1	178.9	180.0
C44	C45	C50	H45	180.0	180.1
N46	C50	C45	H50	180.0	180.1
H45	C45	C44	C1	358.9	0.0
C44	C45	H45	C50	180.0	179.9
H45	C45	C50	N46	180.5	180.0
H45	C45	C50	H50	0.6	359.9
N46	C50	C45	H45	180.5	180.0
C45	C50	N46	H50	180.0	179.9
H50	C50	C45	H45	0.6	359.9
C45	C50	H50	N46	180.0	180.1
C44	C1	H11	H12	125.3	120.0
C44	C1	H11	H13	234.8	240.0
H12	C1	H11	H13	109.5	120.0
C44	C1	H12	H11	227.6	240.0
C44	C1	H12	H13	113.8	120.0
H11	C1	H12	H13	246.3	240.0
C44	C1	H13	H11	132.3	120.0
C44	C1	H13	H12	246.2	240.0
H11	C1	H13	H12	113.9	120.0