PDB Chemical Component CD2
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CD2
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C1 |
1.400 |
1.393 |
| C4 |
C1 |
1.397 |
1.361 |
| C1 |
H1 |
1.080 |
1.080 |
| C3 |
C2 |
1.390 |
1.362 |
| C2 |
H2 |
1.080 |
1.080 |
| C6 |
C3 |
1.397 |
1.405 |
| C3 |
H3 |
1.080 |
1.080 |
| C5 |
C4 |
1.388 |
1.406 |
| C4 |
H4 |
1.080 |
1.080 |
| C6 |
C5 |
1.392 |
1.418 |
| N10 |
C5 |
1.337 |
1.337 |
| C7 |
C6 |
1.389 |
1.406 |
| C8 |
C7 |
1.382 |
1.387 |
| C7 |
H7 |
1.080 |
1.080 |
| C11 |
C8 |
1.489 |
1.483 |
| C8 |
C9 |
1.390 |
1.404 |
| C9 |
N10 |
1.335 |
1.309 |
| C9 |
H9 |
1.080 |
1.080 |
| C16 |
C11 |
1.393 |
1.391 |
| N12 |
C11 |
1.349 |
1.328 |
| C13 |
N12 |
1.333 |
1.317 |
| C14 |
C13 |
1.383 |
1.381 |
| C13 |
H13 |
1.080 |
1.080 |
| C14 |
C15 |
1.380 |
1.398 |
| C14 |
H14 |
1.080 |
1.080 |
| C17 |
C15 |
1.483 |
1.484 |
| C15 |
C16 |
1.390 |
1.396 |
| C16 |
H16 |
1.080 |
1.080 |
| C18 |
C17 |
1.375 |
1.407 |
| C17 |
N19 |
1.341 |
1.317 |
| C21 |
C18 |
1.375 |
1.382 |
| C18 |
H18 |
1.080 |
1.080 |
| N20 |
N19 |
1.396 |
1.285 |
| C21 |
N20 |
1.328 |
1.366 |
| N20 |
C24 |
1.478 |
1.465 |
| C22 |
C21 |
1.498 |
1.471 |
| O27 |
C22 |
1.254 |
1.216 |
| O25 |
C22 |
1.260 |
1.348 |
| C24 |
C23 |
1.533 |
1.530 |
| N26 |
C23 |
1.446 |
1.469 |
| C23 |
H23 |
1.100 |
1.090 |
| C23 |
H23A |
1.100 |
1.090 |
| C24 |
H24 |
1.100 |
1.090 |
| C24 |
H24A |
1.100 |
1.090 |
| O25 |
HO25 |
0.950 |
0.967 |
| N26 |
HN26 |
1.000 |
1.009 |
| N26 |
HN2A |
1.000 |
1.009 |
Bond Angles for CD2
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
H1 |
119.6 |
119.4 |
| C4 |
C1 |
H1 |
119.7 |
119.5 |
| C3 |
C2 |
H2 |
120.1 |
119.6 |
| C6 |
C3 |
H3 |
120.4 |
120.2 |
| C5 |
C4 |
H4 |
120.4 |
120.0 |
| C8 |
C7 |
H7 |
120.4 |
121.0 |
| C8 |
C9 |
N10 |
121.7 |
121.6 |
| C8 |
C9 |
H9 |
119.2 |
119.2 |
| N10 |
C9 |
H9 |
119.1 |
119.2 |
| C14 |
C13 |
H13 |
119.6 |
119.5 |
| C15 |
C14 |
H14 |
120.1 |
120.4 |
| C14 |
C15 |
C16 |
118.7 |
118.3 |
| C15 |
C16 |
H16 |
120.2 |
120.5 |
| C18 |
C17 |
N19 |
107.6 |
107.6 |
| C21 |
C18 |
H18 |
125.3 |
127.4 |
| C21 |
N20 |
C24 |
132.0 |
125.1 |
| N20 |
C24 |
C23 |
113.5 |
109.5 |
| N20 |
C24 |
H24 |
108.2 |
109.4 |
| N20 |
C24 |
H24A |
108.1 |
109.5 |
| C24 |
C23 |
H23 |
109.3 |
109.5 |
| C24 |
C23 |
H23A |
109.3 |
109.5 |
| N26 |
C23 |
H23 |
109.2 |
109.4 |
| N26 |
C23 |
H23A |
109.2 |
109.5 |
| H23 |
C23 |
H23A |
109.7 |
109.4 |
| H24 |
C24 |
H24A |
110.7 |
109.5 |
| HN26 |
N26 |
HN2A |
109.5 |
111.0 |
Torsion Angles for CD2
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
C1 |
C2 |
H1 |
180.0 |
180.2 |
| C2 |
C1 |
C4 |
H1 |
180.0 |
179.8 |
| C3 |
C2 |
C1 |
H1 |
180.0 |
180.0 |
| H2 |
C2 |
C1 |
H1 |
0.0 |
0.0 |
| C6 |
C3 |
C2 |
H2 |
180.3 |
180.0 |
| H3 |
C3 |
C2 |
H2 |
0.4 |
0.0 |
| C5 |
C4 |
C1 |
H1 |
179.6 |
180.0 |
| H4 |
C4 |
C1 |
H1 |
359.6 |
359.9 |
| C5 |
C6 |
C3 |
H3 |
179.6 |
179.7 |
| C6 |
C5 |
C4 |
H4 |
180.4 |
180.0 |
| N10 |
C5 |
C4 |
H4 |
360.0 |
0.0 |
| C7 |
C6 |
C3 |
H3 |
359.7 |
0.0 |
| C11 |
C8 |
C7 |
H7 |
359.9 |
360.0 |
| C11 |
C8 |
C9 |
H9 |
0.2 |
360.0 |
| C9 |
C8 |
C7 |
H7 |
179.1 |
180.0 |
| N10 |
C9 |
C8 |
H9 |
180.0 |
179.5 |
| C8 |
C9 |
N10 |
H9 |
180.0 |
180.5 |
| C8 |
C9 |
H9 |
N10 |
180.0 |
179.5 |
| C15 |
C14 |
C13 |
H13 |
179.4 |
180.0 |
| C14 |
C15 |
C16 |
H16 |
180.1 |
180.1 |
| H14 |
C14 |
C13 |
H13 |
359.4 |
0.1 |
| H14 |
C14 |
C15 |
C16 |
180.4 |
179.7 |
| C17 |
C15 |
C14 |
H14 |
358.9 |
0.0 |
| C17 |
C15 |
C16 |
H16 |
1.6 |
359.8 |
| C16 |
C15 |
C14 |
H14 |
180.4 |
179.7 |
| H18 |
C18 |
C17 |
N19 |
178.9 |
180.2 |
| N20 |
C21 |
C18 |
H18 |
181.2 |
179.9 |
| C21 |
N20 |
C24 |
C23 |
214.9 |
269.9 |
| C21 |
N20 |
C24 |
H24 |
335.0 |
29.9 |
| C21 |
N20 |
C24 |
H24A |
95.0 |
149.8 |
| N20 |
C24 |
C23 |
H23 |
180.1 |
300.0 |
| N20 |
C24 |
C23 |
H23A |
300.1 |
60.0 |
| H24 |
C24 |
N20 |
H24A |
240.0 |
240.0 |
| C22 |
C21 |
C18 |
H18 |
0.4 |
0.1 |
| C22 |
C21 |
N20 |
C24 |
1.6 |
360.0 |
| N20 |
C24 |
C23 |
H24 |
120.0 |
120.0 |
| N20 |
C24 |
C23 |
H24A |
240.0 |
240.0 |
| N26 |
C23 |
C24 |
H23 |
240.0 |
240.0 |
| N26 |
C23 |
C24 |
H23A |
120.0 |
120.1 |
| H23 |
C23 |
C24 |
H23A |
240.0 |
240.0 |
| C24 |
C23 |
N26 |
H23 |
120.0 |
120.0 |
| C24 |
C23 |
N26 |
H23A |
240.0 |
239.9 |
| H23 |
C23 |
N26 |
H23A |
120.0 |
119.9 |
| C24 |
C23 |
H23 |
H23A |
119.8 |
120.0 |
| N26 |
C23 |
H23 |
H23A |
240.3 |
240.0 |
| C24 |
C23 |
H23A |
H23 |
240.2 |
240.0 |
| N26 |
C23 |
H23A |
H23 |
119.7 |
119.9 |
| N20 |
C24 |
H24 |
C23 |
236.7 |
240.0 |
| N20 |
C24 |
H24 |
H24A |
118.3 |
120.0 |
| H24 |
C24 |
C23 |
H23 |
60.0 |
180.0 |
| H24 |
C24 |
C23 |
H23A |
180.1 |
300.0 |
| N20 |
C24 |
H24A |
C23 |
123.3 |
120.0 |
| N20 |
C24 |
H24A |
H24 |
241.7 |
240.0 |
| H24A |
C24 |
C23 |
H23 |
300.1 |
60.0 |
| H24A |
C24 |
C23 |
H23A |
60.1 |
180.0 |
| HN26 |
N26 |
C23 |
H23 |
60.0 |
296.0 |
| HN26 |
N26 |
C23 |
H23A |
300.0 |
176.1 |
| HN2A |
N26 |
C23 |
H23 |
180.0 |
60.0 |
| HN2A |
N26 |
C23 |
H23A |
60.0 |
300.1 |