PDB Chemical Component CCZ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CCZ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OP2 |
P |
1.445 |
1.610 |
| C8 |
P |
1.878 |
1.823 |
| P |
OP3 |
1.510 |
1.609 |
| P |
OP1 |
1.516 |
1.481 |
| C2 |
C1 |
1.397 |
1.482 |
| N1 |
C1 |
1.340 |
1.302 |
| C1 |
N2 |
1.333 |
1.378 |
| N1 |
HN1 |
1.000 |
0.969 |
| C3 |
C2 |
1.380 |
1.394 |
| C2 |
C7 |
1.393 |
1.394 |
| N2 |
HN2 |
1.000 |
0.970 |
| N2 |
HN2A |
1.000 |
0.969 |
| C4 |
C3 |
1.381 |
1.380 |
| C3 |
H3 |
1.080 |
1.080 |
| C4 |
C5 |
1.372 |
1.384 |
| C4 |
H4 |
1.080 |
1.080 |
| C8 |
C5 |
1.532 |
1.507 |
| C5 |
C6 |
1.376 |
1.383 |
| C6 |
C7 |
1.405 |
1.380 |
| C6 |
H6 |
1.080 |
1.080 |
| C7 |
H7 |
1.080 |
1.080 |
| C8 |
H8 |
1.100 |
1.089 |
| C8 |
H8A |
1.100 |
1.090 |
| C02 |
C01 |
1.392 |
1.388 |
| C01 |
OP2 |
1.337 |
1.359 |
| C01 |
C06 |
1.404 |
1.387 |
| C03 |
C02 |
1.396 |
1.381 |
| C02 |
H02 |
1.080 |
1.080 |
| C03 |
C04 |
1.419 |
1.382 |
| C03 |
H03 |
1.080 |
1.080 |
| C04 |
C05 |
1.419 |
1.382 |
| C04 |
H04 |
1.080 |
1.080 |
| C05 |
C06 |
1.393 |
1.381 |
| C05 |
H05 |
1.080 |
1.080 |
| C06 |
H06 |
1.080 |
1.080 |
| OP3 |
HOP3 |
0.950 |
0.967 |
Bond Angles for CCZ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP2 |
P |
OP3 |
98.6 |
109.5 |
| C8 |
P |
OP3 |
107.5 |
109.5 |
| C8 |
P |
OP1 |
111.4 |
109.5 |
| OP1 |
P |
OP3 |
109.0 |
109.5 |
| P |
OP3 |
HOP3 |
109.5 |
114.0 |
| C2 |
C1 |
N2 |
122.9 |
120.0 |
| N1 |
C1 |
N2 |
115.9 |
120.0 |
| C1 |
N2 |
HN2 |
120.0 |
119.9 |
| C1 |
N2 |
HN2A |
120.0 |
120.0 |
| C3 |
C2 |
C7 |
116.8 |
119.8 |
| C2 |
C7 |
C6 |
122.8 |
119.9 |
| C2 |
C7 |
H7 |
118.6 |
120.1 |
| HN2 |
N2 |
HN2A |
120.0 |
120.0 |
| C4 |
C3 |
H3 |
119.4 |
120.0 |
| C5 |
C4 |
H4 |
119.4 |
119.9 |
| C4 |
C5 |
C6 |
120.2 |
120.2 |
| C5 |
C6 |
C7 |
117.9 |
120.2 |
| C5 |
C6 |
H6 |
121.0 |
119.9 |
| C7 |
C6 |
H6 |
121.0 |
119.9 |
| C6 |
C7 |
H7 |
118.6 |
120.0 |
| H8 |
C8 |
H8A |
112.9 |
109.5 |
| C02 |
C01 |
OP2 |
116.0 |
120.0 |
| C02 |
C01 |
C06 |
123.0 |
119.9 |
| C06 |
C01 |
OP2 |
120.9 |
120.1 |
| C01 |
C06 |
C05 |
117.5 |
119.9 |
| C01 |
C06 |
H06 |
121.2 |
120.0 |
| C03 |
C02 |
H02 |
120.0 |
120.1 |
| C04 |
C03 |
H03 |
121.1 |
120.0 |
| C03 |
C04 |
C05 |
121.4 |
120.1 |
| C03 |
C04 |
H04 |
119.3 |
120.0 |
| C05 |
C04 |
H04 |
119.3 |
120.0 |
| C04 |
C05 |
C06 |
120.1 |
120.1 |
| C04 |
C05 |
H05 |
119.9 |
120.0 |
| C06 |
C05 |
H05 |
120.0 |
119.9 |
| C05 |
C06 |
H06 |
121.2 |
120.0 |
Torsion Angles for CCZ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C8 |
P |
OP2 |
OP3 |
247.6 |
240.0 |
| OP1 |
P |
OP2 |
OP3 |
117.2 |
120.0 |
| OP2 |
P |
OP3 |
HOP3 |
124.3 |
300.0 |
| OP2 |
P |
C8 |
OP3 |
106.6 |
120.0 |
| OP1 |
P |
C8 |
OP3 |
240.7 |
240.0 |
| C8 |
P |
OP3 |
HOP3 |
239.1 |
60.0 |
| C8 |
P |
OP3 |
OP1 |
239.1 |
240.0 |
| OP2 |
P |
OP1 |
OP3 |
248.5 |
240.0 |
| C8 |
P |
OP1 |
OP3 |
118.4 |
120.0 |
| OP1 |
P |
OP3 |
HOP3 |
360.0 |
180.1 |
| N1 |
C1 |
C2 |
N2 |
183.2 |
180.0 |
| C2 |
C1 |
N2 |
HN2 |
183.1 |
180.0 |
| C2 |
C1 |
N2 |
HN2A |
3.1 |
0.0 |
| C2 |
C1 |
N1 |
N2 |
177.0 |
180.0 |
| N1 |
C1 |
N2 |
HN2 |
0.0 |
360.0 |
| N1 |
C1 |
N2 |
HN2A |
180.0 |
180.0 |
| HN2 |
N2 |
C1 |
HN2A |
180.0 |
179.9 |
| HN1 |
N1 |
C1 |
N2 |
0.0 |
360.0 |
| C3 |
C2 |
C7 |
C6 |
359.1 |
359.5 |
| C3 |
C2 |
C7 |
H7 |
179.1 |
179.7 |
| C7 |
C2 |
C1 |
N2 |
355.5 |
180.0 |
| C5 |
C6 |
C7 |
C2 |
359.7 |
0.6 |
| C2 |
C7 |
C6 |
H6 |
179.7 |
180.3 |
| C6 |
C7 |
C2 |
H7 |
180.0 |
179.7 |
| C1 |
N2 |
HN2 |
HN2A |
180.0 |
180.1 |
| C1 |
N2 |
HN2A |
HN2 |
180.0 |
179.9 |
| C4 |
C3 |
C2 |
C7 |
0.9 |
0.3 |
| H3 |
C3 |
C2 |
C7 |
180.9 |
180.2 |
| C5 |
C4 |
C3 |
H3 |
180.4 |
180.0 |
| C4 |
C5 |
C6 |
C7 |
1.6 |
359.6 |
| C4 |
C5 |
C6 |
H6 |
181.6 |
179.9 |
| H4 |
C4 |
C3 |
H3 |
0.4 |
0.1 |
| H4 |
C4 |
C5 |
C6 |
178.3 |
180.0 |
| C5 |
C8 |
P |
OP3 |
70.0 |
65.0 |
| C5 |
C8 |
P |
OP1 |
310.7 |
304.9 |
| C8 |
C5 |
C4 |
H4 |
355.3 |
359.9 |
| C8 |
C5 |
C6 |
H6 |
4.9 |
0.0 |
| C2 |
C7 |
C6 |
C5 |
359.7 |
0.6 |
| C6 |
C5 |
C4 |
H4 |
178.3 |
180.0 |
| C7 |
C6 |
C5 |
H6 |
180.0 |
179.7 |
| C5 |
C6 |
C7 |
H7 |
179.7 |
180.3 |
| C2 |
C7 |
C6 |
H7 |
180.0 |
180.3 |
| C5 |
C6 |
C7 |
H6 |
180.0 |
180.3 |
| C5 |
C6 |
H6 |
C7 |
180.0 |
179.7 |
| H6 |
C6 |
C7 |
H7 |
359.7 |
360.0 |
| C2 |
C7 |
H7 |
C6 |
180.0 |
179.7 |
| H7 |
C7 |
C6 |
H6 |
359.7 |
360.0 |
| H8 |
C8 |
P |
OP3 |
190.0 |
185.0 |
| H8 |
C8 |
P |
OP1 |
70.7 |
65.0 |
| H8A |
C8 |
P |
OP3 |
310.0 |
305.1 |
| H8A |
C8 |
P |
OP1 |
190.7 |
185.0 |
| C06 |
C01 |
C02 |
OP2 |
181.1 |
180.4 |
| C02 |
C01 |
C06 |
C05 |
356.6 |
359.3 |
| C02 |
C01 |
C06 |
H06 |
176.6 |
179.7 |
| C01 |
OP2 |
P |
OP3 |
213.8 |
295.0 |
| C02 |
C01 |
OP2 |
C06 |
181.1 |
180.4 |
| OP2 |
C01 |
C06 |
C05 |
177.7 |
179.7 |
| OP2 |
C01 |
C06 |
H06 |
357.7 |
0.1 |
| C02 |
C01 |
C06 |
OP2 |
178.8 |
179.6 |
| C04 |
C05 |
C06 |
C01 |
2.9 |
0.6 |
| C01 |
C06 |
C05 |
H05 |
182.9 |
180.3 |
| C05 |
C06 |
C01 |
H06 |
180.0 |
179.6 |
| C03 |
C02 |
C01 |
OP2 |
182.1 |
180.0 |
| C03 |
C02 |
C01 |
C06 |
3.2 |
0.3 |
| H02 |
C02 |
C01 |
OP2 |
2.1 |
359.9 |
| H02 |
C02 |
C01 |
C06 |
183.2 |
180.3 |
| C04 |
C03 |
C02 |
H02 |
177.6 |
180.1 |
| C05 |
C04 |
C03 |
H04 |
180.0 |
180.0 |
| C03 |
C04 |
C05 |
C06 |
357.6 |
359.7 |
| C03 |
C04 |
C05 |
H05 |
177.6 |
180.0 |
| H03 |
C03 |
C02 |
H02 |
357.6 |
360.0 |
| H03 |
C03 |
C04 |
C05 |
182.1 |
180.0 |
| H03 |
C03 |
C04 |
H04 |
2.1 |
0.0 |
| C01 |
C06 |
C05 |
C04 |
2.9 |
0.6 |
| C05 |
C04 |
C03 |
H03 |
182.1 |
180.0 |
| C03 |
C04 |
C05 |
H04 |
180.0 |
180.0 |
| C06 |
C05 |
C04 |
H05 |
180.0 |
179.7 |
| C04 |
C05 |
C06 |
H06 |
182.9 |
180.3 |
| H04 |
C04 |
C03 |
H03 |
2.1 |
0.0 |
| C03 |
C04 |
H04 |
C05 |
180.0 |
180.0 |
| H04 |
C04 |
C05 |
C06 |
177.6 |
179.7 |
| H04 |
C04 |
C05 |
H05 |
357.6 |
0.0 |
| C05 |
C06 |
C01 |
OP2 |
177.7 |
179.7 |
| C01 |
C06 |
C05 |
H06 |
180.0 |
180.4 |
| C06 |
C05 |
C04 |
H04 |
177.6 |
179.7 |
| C04 |
C05 |
C06 |
H05 |
180.0 |
180.3 |
| H05 |
C05 |
C04 |
H04 |
357.6 |
0.0 |
| C04 |
C05 |
H05 |
C06 |
180.0 |
179.7 |
| H05 |
C05 |
C06 |
H06 |
2.9 |
360.0 |
| H06 |
C06 |
C01 |
OP2 |
357.7 |
0.1 |
| C01 |
C06 |
H06 |
C05 |
180.0 |
179.6 |
| H06 |
C06 |
C05 |
H05 |
2.9 |
360.0 |