PDB Chemical Component CBI
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CBI
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O4 |
C4 |
1.406 |
1.429 |
| C6 |
O6 |
1.439 |
1.429 |
| C6 |
C5 |
1.523 |
1.530 |
| C4 |
C5 |
1.503 |
1.531 |
| C4 |
C3 |
1.531 |
1.532 |
| C5 |
O5 |
1.411 |
1.429 |
| C3 |
O3 |
1.429 |
1.429 |
| C3 |
C2 |
1.500 |
1.531 |
| O5 |
C1 |
1.425 |
1.430 |
| C1 |
C2 |
1.535 |
1.530 |
| C1 |
O4' |
1.419 |
1.429 |
| C2 |
O2 |
1.388 |
1.429 |
| O3' |
C3' |
1.431 |
1.429 |
| O6' |
C6' |
1.430 |
1.429 |
| O4' |
C4' |
1.425 |
1.428 |
| C4' |
C3' |
1.516 |
1.532 |
| C4' |
C5' |
1.518 |
1.531 |
| C3' |
C2' |
1.499 |
1.532 |
| C2' |
O2' |
1.414 |
1.429 |
| C2' |
C1' |
1.534 |
1.530 |
| C6' |
C5' |
1.523 |
1.530 |
| C5' |
O5' |
1.432 |
1.428 |
| O5' |
C1' |
1.412 |
1.430 |
| C1' |
O1' |
1.420 |
1.429 |
| C1 |
H1 |
1.100 |
1.090 |
| C2 |
H2 |
1.100 |
1.090 |
| C3 |
H3 |
1.100 |
1.090 |
| C4 |
H4 |
1.100 |
1.090 |
| C5 |
H5 |
1.100 |
1.090 |
| C6 |
H62 |
1.100 |
1.090 |
| C6 |
H61 |
1.100 |
1.089 |
| O2 |
HO2 |
0.951 |
0.967 |
| O3 |
HO3 |
0.950 |
0.967 |
| O4 |
HO4 |
0.950 |
0.967 |
| O6 |
HO6 |
0.950 |
0.968 |
| C1' |
H1' |
1.100 |
1.090 |
| C2' |
H2' |
1.100 |
1.091 |
| C3' |
H3' |
1.100 |
1.090 |
| C4' |
H4' |
1.100 |
1.091 |
| C5' |
H5' |
1.100 |
1.091 |
| C6' |
H6'2 |
1.100 |
1.090 |
| C6' |
H6'1 |
1.100 |
1.089 |
| O1' |
HO1' |
0.950 |
0.966 |
| O2' |
HO2' |
0.950 |
0.967 |
| O3' |
HO3' |
0.950 |
0.967 |
| O6' |
HO6' |
0.950 |
0.967 |
Bond Angles for CBI
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O4 |
C4 |
H4 |
112.6 |
109.6 |
| O6 |
C6 |
H62 |
109.2 |
109.5 |
| O6 |
C6 |
H61 |
109.2 |
109.5 |
| C6 |
O6 |
HO6 |
109.5 |
114.0 |
| C6 |
C5 |
O5 |
108.9 |
109.5 |
| C6 |
C5 |
H5 |
108.2 |
109.5 |
| C4 |
C5 |
O5 |
112.4 |
109.4 |
| C5 |
C4 |
H4 |
111.0 |
109.5 |
| C4 |
C5 |
H5 |
108.4 |
109.5 |
| C4 |
C3 |
O3 |
111.5 |
109.5 |
| C4 |
C3 |
H3 |
109.2 |
109.6 |
| C5 |
O5 |
C1 |
109.8 |
114.1 |
| O5 |
C5 |
H5 |
109.6 |
109.5 |
| O3 |
C3 |
H3 |
110.6 |
109.5 |
| C3 |
O3 |
HO3 |
109.5 |
114.0 |
| C3 |
C2 |
O2 |
111.5 |
109.5 |
| C3 |
C2 |
H2 |
109.9 |
109.6 |
| O5 |
C1 |
H1 |
111.6 |
109.5 |
| C1 |
C2 |
O2 |
106.9 |
109.5 |
| C1 |
C2 |
H2 |
109.5 |
109.5 |
| O2 |
C2 |
H2 |
111.6 |
109.5 |
| C2 |
O2 |
HO2 |
109.5 |
113.9 |
| O3' |
C3' |
H3' |
109.3 |
109.5 |
| O6' |
C6' |
H6'2 |
109.5 |
109.4 |
| O6' |
C6' |
H6'1 |
109.5 |
109.5 |
| O4' |
C4' |
H4' |
109.1 |
109.6 |
| C4' |
C3' |
H3' |
108.2 |
109.5 |
| C4' |
C5' |
O5' |
110.0 |
109.5 |
| C5' |
C4' |
H4' |
107.9 |
109.5 |
| C4' |
C5' |
H5' |
108.4 |
109.4 |
| C3' |
C2' |
O2' |
112.6 |
109.5 |
| C3' |
C2' |
C1' |
106.0 |
109.2 |
| C3' |
C2' |
H2' |
110.7 |
109.5 |
| C1' |
C2' |
O2' |
104.9 |
109.6 |
| O2' |
C2' |
H2' |
112.1 |
109.5 |
| C2' |
O2' |
HO2' |
109.5 |
113.9 |
| C2' |
C1' |
O1' |
110.0 |
109.5 |
| C2' |
C1' |
H1' |
109.0 |
109.5 |
| C1' |
C2' |
H2' |
110.2 |
109.5 |
| C6' |
C5' |
O5' |
109.1 |
109.5 |
| C6' |
C5' |
H5' |
108.3 |
109.4 |
| C5' |
O5' |
C1' |
109.2 |
114.1 |
| O5' |
C5' |
H5' |
109.6 |
109.5 |
| O5' |
C1' |
H1' |
110.8 |
109.5 |
| O1' |
C1' |
H1' |
110.6 |
109.4 |
| C1' |
O1' |
HO1' |
109.5 |
114.1 |
| H61 |
C6 |
H62 |
109.5 |
109.5 |
| H6'1 |
C6' |
H6'2 |
109.5 |
109.5 |
Torsion Angles for CBI
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O4 |
C4 |
C5 |
O5 |
187.2 |
182.5 |
| C5 |
C4 |
O4 |
H4 |
231.2 |
239.8 |
| O4 |
C4 |
C5 |
H5 |
308.5 |
302.5 |
| O4 |
C4 |
C3 |
H3 |
54.5 |
57.0 |
| O6 |
C6 |
C5 |
O5 |
295.2 |
65.1 |
| O6 |
C6 |
C5 |
H5 |
176.1 |
305.1 |
| H61 |
C6 |
O6 |
H62 |
119.6 |
240.0 |
| C4 |
C5 |
C6 |
O5 |
123.0 |
119.9 |
| C6 |
C5 |
C4 |
H4 |
296.7 |
302.3 |
| C4 |
C5 |
C6 |
H5 |
242.2 |
239.9 |
| C6 |
C5 |
O5 |
C1 |
188.5 |
181.1 |
| O5 |
C5 |
C6 |
H5 |
119.1 |
120.0 |
| O4 |
C4 |
C5 |
H4 |
129.5 |
120.2 |
| C6 |
C5 |
C4 |
O5 |
239.0 |
240.0 |
| C6 |
C5 |
C4 |
H5 |
117.7 |
120.1 |
| C5 |
C4 |
C3 |
O3 |
171.5 |
176.9 |
| C5 |
C4 |
C3 |
H3 |
294.0 |
297.0 |
| C4 |
C5 |
O5 |
C1 |
67.4 |
61.1 |
| O5 |
C5 |
C4 |
H5 |
238.7 |
240.0 |
| O3 |
C3 |
C4 |
H3 |
237.5 |
239.8 |
| C4 |
C3 |
O3 |
HO3 |
180.0 |
180.5 |
| C4 |
C3 |
C2 |
O2 |
188.0 |
183.1 |
| C4 |
C3 |
C2 |
H2 |
63.6 |
62.9 |
| C6 |
C5 |
O5 |
H5 |
241.8 |
240.0 |
| O5 |
C5 |
C4 |
H4 |
57.7 |
62.2 |
| C4 |
C5 |
O5 |
H5 |
120.6 |
120.0 |
| C5 |
O5 |
C1 |
H1 |
60.3 |
58.9 |
| C4 |
C3 |
O3 |
H3 |
121.7 |
120.3 |
| O3 |
C3 |
C2 |
O2 |
67.7 |
63.2 |
| O3 |
C3 |
C2 |
H2 |
303.4 |
303.1 |
| C1 |
C2 |
C3 |
O2 |
116.7 |
119.9 |
| C1 |
C2 |
C3 |
H2 |
241.0 |
240.1 |
| O2 |
C2 |
C3 |
H2 |
124.3 |
120.1 |
| C3 |
C2 |
O2 |
HO2 |
180.0 |
179.7 |
| C1 |
O5 |
C5 |
H5 |
306.7 |
301.1 |
| O5 |
C1 |
C2 |
H2 |
296.7 |
297.6 |
| C3 |
C2 |
C1 |
O2 |
240.3 |
240.1 |
| C3 |
C2 |
C1 |
H2 |
119.3 |
120.0 |
| O2 |
C2 |
C1 |
H2 |
238.9 |
239.9 |
| C1 |
C2 |
O2 |
HO2 |
63.1 |
60.0 |
| C1 |
O4' |
C4' |
H4' |
357.2 |
329.9 |
| C3 |
C2 |
O2 |
H2 |
236.6 |
239.8 |
| C1 |
C2 |
O2 |
H2 |
119.7 |
120.1 |
| C4' |
C3' |
O3' |
H3' |
118.9 |
120.2 |
| O3' |
C3' |
C2' |
H2' |
305.7 |
303.0 |
| O6' |
C6' |
C5' |
H5' |
177.5 |
305.0 |
| H6'1 |
C6' |
O6' |
H6'2 |
120.0 |
240.0 |
| O4' |
C4' |
C3' |
H3' |
52.0 |
57.0 |
| O4' |
C4' |
C5' |
O5' |
185.4 |
182.5 |
| C5' |
C4' |
O4' |
H4' |
241.0 |
239.9 |
| O4' |
C4' |
C5' |
H5' |
305.1 |
302.5 |
| O3' |
C3' |
C4' |
H3' |
240.5 |
239.8 |
| C4' |
C3' |
C2' |
O2' |
194.2 |
183.1 |
| C4' |
C3' |
C2' |
C1' |
308.3 |
303.0 |
| C4' |
C3' |
C2' |
H2' |
67.8 |
63.0 |
| O4' |
C4' |
C5' |
H4' |
119.7 |
120.2 |
| C5' |
C4' |
C3' |
H3' |
288.7 |
297.0 |
| C6' |
C5' |
C4' |
O5' |
238.9 |
240.0 |
| C6' |
C5' |
C4' |
H5' |
119.1 |
120.0 |
| C4' |
C5' |
O5' |
C1' |
63.3 |
61.1 |
| O5' |
C5' |
C4' |
H5' |
240.3 |
240.0 |
| C1' |
C2' |
C3' |
O2' |
114.1 |
119.9 |
| O2' |
C2' |
C3' |
H2' |
126.3 |
120.1 |
| C3' |
C2' |
O2' |
HO2' |
180.0 |
179.7 |
| C3' |
C2' |
C1' |
O1' |
178.8 |
177.6 |
| C3' |
C2' |
C1' |
H1' |
300.2 |
297.6 |
| C1' |
C2' |
C3' |
H2' |
240.5 |
240.1 |
| C3' |
C2' |
O2' |
C1' |
114.8 |
119.7 |
| C3' |
C2' |
O2' |
H2' |
234.4 |
239.9 |
| O2' |
C2' |
C1' |
O1' |
298.1 |
297.5 |
| O2' |
C2' |
C1' |
H1' |
59.6 |
57.5 |
| C1' |
C2' |
O2' |
H2' |
119.6 |
120.2 |
| C3' |
C2' |
C1' |
O2' |
240.7 |
240.1 |
| C3' |
C2' |
C1' |
H2' |
119.9 |
119.9 |
| O2' |
C2' |
C1' |
H2' |
239.2 |
239.8 |
| C1' |
C2' |
O2' |
HO2' |
65.1 |
60.0 |
| C5' |
O5' |
C1' |
C2' |
290.3 |
298.9 |
| O5' |
C1' |
C2' |
H1' |
121.8 |
120.0 |
| O1' |
C1' |
C2' |
H1' |
238.5 |
240.0 |
| C2' |
C1' |
O1' |
HO1' |
180.0 |
180.0 |
| C4' |
C5' |
C6' |
O5' |
121.6 |
120.0 |
| C6' |
C5' |
C4' |
H4' |
304.6 |
302.2 |
| C4' |
C5' |
C6' |
H5' |
240.8 |
240.0 |
| C6' |
C5' |
O5' |
C1' |
185.9 |
181.1 |
| O5' |
C5' |
C6' |
H5' |
119.2 |
120.0 |
| O5' |
C5' |
C4' |
H4' |
65.7 |
62.2 |
| C4' |
C5' |
O5' |
H5' |
119.0 |
120.0 |
| C6' |
C5' |
O5' |
H5' |
241.6 |
240.0 |
| C5' |
O5' |
C1' |
H1' |
51.1 |
58.9 |
| C2' |
C1' |
O5' |
H1' |
239.2 |
240.0 |
| O5' |
C1' |
C2' |
H2' |
302.2 |
297.7 |
| C1' |
O5' |
C5' |
H5' |
304.3 |
301.1 |
| O1' |
C1' |
O5' |
H1' |
120.1 |
120.0 |
| O5' |
C1' |
O1' |
HO1' |
299.3 |
299.9 |
| O1' |
C1' |
C2' |
O2' |
298.1 |
297.5 |
| C2' |
C1' |
O1' |
H1' |
120.5 |
120.0 |
| O1' |
C1' |
C2' |
H2' |
58.9 |
57.7 |
| C5' |
O5' |
C1' |
O1' |
171.2 |
178.9 |
| O5' |
C1' |
O1' |
H1' |
239.8 |
240.0 |
| H1 |
C1 |
C2 |
O2 |
52.0 |
57.5 |
| H1 |
C1 |
C2 |
H2 |
173.0 |
177.6 |
| C3 |
C2 |
H2 |
O2 |
124.3 |
120.1 |
| C1 |
C2 |
H2 |
O2 |
241.9 |
239.9 |
| H2 |
C2 |
O2 |
HO2 |
303.4 |
299.9 |
| C4 |
C3 |
H3 |
O3 |
237.0 |
239.8 |
| H3 |
C3 |
O3 |
HO3 |
58.3 |
60.2 |
| H3 |
C3 |
C2 |
O2 |
310.4 |
303.1 |
| H3 |
C3 |
C2 |
H2 |
186.0 |
182.9 |
| H4 |
C4 |
C5 |
O5 |
57.7 |
62.2 |
| H4 |
C4 |
C5 |
H5 |
179.0 |
182.2 |
| H4 |
C4 |
C3 |
O3 |
52.4 |
57.0 |
| H4 |
C4 |
C3 |
H3 |
174.8 |
177.2 |
| C6 |
C5 |
H5 |
O5 |
118.7 |
120.0 |
| C4 |
C5 |
H5 |
O5 |
237.0 |
240.0 |
| H5 |
C5 |
C4 |
H4 |
179.0 |
182.2 |
| H5 |
C5 |
O5 |
C1 |
306.7 |
301.1 |
| O6 |
C6 |
H62 |
H61 |
119.4 |
240.0 |
| H62 |
C6 |
O6 |
HO6 |
300.2 |
60.0 |
| H62 |
C6 |
C5 |
O5 |
175.0 |
185.0 |
| H62 |
C6 |
C5 |
H5 |
55.9 |
65.0 |
| O6 |
C6 |
H61 |
H62 |
240.6 |
120.0 |
| H61 |
C6 |
O6 |
HO6 |
59.8 |
300.0 |
| H61 |
C6 |
C5 |
O5 |
55.4 |
305.1 |
| H61 |
C6 |
C5 |
H5 |
296.3 |
185.1 |
| HO2 |
O2 |
C2 |
H2 |
303.4 |
299.9 |
| HO3 |
O3 |
C3 |
H3 |
58.3 |
60.2 |
| HO4 |
O4 |
C4 |
H4 |
308.8 |
300.2 |
| HO6 |
O6 |
C6 |
H62 |
300.2 |
60.0 |
| HO6 |
O6 |
C6 |
H61 |
59.8 |
300.0 |
| H1' |
C1' |
C2' |
O2' |
59.6 |
57.5 |
| C2' |
C1' |
H1' |
O1' |
238.9 |
240.0 |
| H1' |
C1' |
C2' |
H2' |
180.4 |
177.7 |
| H1' |
C1' |
O1' |
HO1' |
59.5 |
59.9 |
| C3' |
C2' |
H2' |
O2' |
126.6 |
120.1 |
| C3' |
C2' |
H2' |
C1' |
243.0 |
240.3 |
| C1' |
C2' |
H2' |
O2' |
243.6 |
239.8 |
| H2' |
C2' |
O2' |
HO2' |
305.6 |
299.8 |
| H2' |
C2' |
C1' |
O1' |
58.9 |
57.7 |
| H2' |
C2' |
C1' |
H1' |
180.4 |
177.7 |
| H3' |
C3' |
C2' |
O2' |
314.3 |
303.0 |
| H3' |
C3' |
C2' |
C1' |
68.4 |
62.9 |
| H3' |
C3' |
C2' |
H2' |
188.0 |
182.8 |
| H4' |
C4' |
C3' |
H3' |
170.7 |
177.2 |
| H4' |
C4' |
C5' |
O5' |
65.7 |
62.2 |
| H4' |
C4' |
C5' |
H5' |
185.5 |
182.3 |
| C4' |
C5' |
H5' |
O5' |
240.0 |
240.0 |
| H5' |
C5' |
C4' |
H4' |
185.5 |
182.3 |
| C6' |
C5' |
H5' |
O5' |
118.9 |
120.0 |
| H5' |
C5' |
O5' |
C1' |
304.3 |
301.1 |
| O6' |
C6' |
H6'2 |
H6'1 |
120.0 |
240.0 |
| H6'2 |
C6' |
C5' |
O5' |
176.7 |
185.0 |
| H6'2 |
C6' |
C5' |
H5' |
57.5 |
65.0 |
| O6' |
C6' |
H6'1 |
H6'2 |
240.0 |
120.0 |
| H6'1 |
C6' |
C5' |
O5' |
56.7 |
305.0 |
| H6'1 |
C6' |
C5' |
H5' |
297.5 |
185.0 |
| HO1' |
O1' |
C1' |
H1' |
59.5 |
59.9 |
| HO2' |
O2' |
C2' |
H2' |
305.6 |
299.8 |
| HO3' |
O3' |
C3' |
H3' |
61.1 |
60.2 |
| HO6' |
O6' |
C6' |
H6'2 |
300.0 |
60.0 |
| HO6' |
O6' |
C6' |
H6'1 |
60.0 |
300.0 |