PDB Chemical Component CB9

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CB9

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C O 1.224 1.207
C CA 1.536 1.507
N CA 1.486 1.465
N CAT 1.348 1.348
CA CB 1.549 1.530
CB NAP 1.445 1.490
CB SAQ 1.763 1.841
CAA CAZ 1.524 1.530
CAB CAZ 1.523 1.530
OAD CAR 1.251 1.209
OAE CAS 1.240 1.208
OAF CAT 1.216 1.213
OAG CAR 1.251 1.342
OAH CAS 1.243 1.343
CAJ CAK 1.389 1.382
CAJ CAL 1.396 1.383
CAK CAM 1.391 1.382
CAL CAN 1.394 1.382
CAM CAU 1.399 1.382
CAN CAU 1.394 1.382
NAP CAX 1.439 1.466
SAQ CAZ 1.772 1.837
CAR CAX 1.500 1.507
CAS CAY 1.505 1.507
CAT CAY 1.517 1.507
CAU CAY 1.488 1.507
CAX CAZ 1.531 1.540
C H 1.080 1.079
N HN 1.000 0.970
CA HA 1.100 1.090
CB HB 1.100 1.090
CAA HAA 1.100 1.090
CAA HAAA 1.100 1.091
CAA HAAB 1.100 1.089
CAB HAB 1.100 1.090
CAB HABA 1.100 1.089
CAB HABB 1.100 1.091
OAG HOAG 0.950 0.967
OAH HOAH 0.950 0.968
CAJ HAJ 1.080 1.080
CAK HAK 1.080 1.080
CAL HAL 1.080 1.080
CAM HAM 1.080 1.081
CAN HAN 1.080 1.080
NAP HNAP 1.000 1.009
CAX HAX 1.100 1.090
CAY HAY 1.100 1.090

Bond Angles for CB9

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O C CA 115.5 120.0
O C H 122.3 120.0
C CA N 113.1 109.5
C CA CB 107.0 109.5
CA C H 122.3 120.0
C CA HA 107.5 109.5
CA N CAT 116.3 120.0
N CA CB 113.4 109.4
CA N HN 121.9 120.0
N CA HA 108.1 109.5
N CAT OAF 119.8 120.0
N CAT CAY 126.1 120.0
CAT N HN 121.8 120.0
CA CB NAP 112.1 111.1
CA CB SAQ 116.0 111.1
CB CA HA 107.4 109.4
CA CB HB 108.9 111.0
NAP CB SAQ 102.5 100.9
CB NAP CAX 116.1 110.9
NAP CB HB 110.4 111.1
CB NAP HNAP 107.8 110.9
CB SAQ CAZ 97.6 94.9
SAQ CB HB 106.6 111.2
CAA CAZ CAB 110.0 110.6
CAA CAZ SAQ 109.2 110.6
CAA CAZ CAX 110.7 110.6
CAZ CAA HAA 109.5 109.5
CAZ CAA HAAA 109.5 109.5
CAZ CAA HAAB 109.5 109.5
CAB CAZ SAQ 109.4 110.6
CAB CAZ CAX 112.4 110.7
CAZ CAB HAB 109.5 109.4
CAZ CAB HABA 109.5 109.5
CAZ CAB HABB 109.5 109.5
OAD CAR OAG 123.6 120.0
OAD CAR CAX 117.9 120.0
OAE CAS OAH 122.1 120.1
OAE CAS CAY 121.0 120.0
OAF CAT CAY 114.1 120.0
OAG CAR CAX 118.5 120.0
CAR OAG HOAG 109.5 117.0
OAH CAS CAY 116.9 120.0
CAS OAH HOAH 109.5 116.9
CAK CAJ CAL 120.1 120.0
CAJ CAK CAM 119.4 120.0
CAK CAJ HAJ 120.0 120.0
CAJ CAK HAK 120.3 120.0
CAJ CAL CAN 120.6 120.0
CAL CAJ HAJ 120.0 120.0
CAJ CAL HAL 119.7 120.0
CAK CAM CAU 120.8 120.1
CAM CAK HAK 120.3 120.0
CAK CAM HAM 119.6 120.0
CAL CAN CAU 119.4 120.1
CAN CAL HAL 119.7 120.1
CAL CAN HAN 120.3 120.0
CAM CAU CAN 119.7 119.9
CAM CAU CAY 117.3 120.0
CAU CAM HAM 119.6 119.9
CAN CAU CAY 122.9 120.0
CAU CAN HAN 120.3 120.0
NAP CAX CAR 111.8 108.8
NAP CAX CAZ 104.1 112.9
CAX NAP HNAP 107.8 111.0
NAP CAX HAX 109.0 108.8
SAQ CAZ CAX 104.9 103.5
CAR CAX CAZ 115.6 108.8
CAR CAX HAX 108.2 108.7
CAS CAY CAT 114.8 109.5
CAS CAY CAU 110.2 109.5
CAS CAY HAY 105.0 109.5
CAT CAY CAU 115.5 109.5
CAT CAY HAY 104.9 109.5
CAU CAY HAY 105.2 109.5
CAZ CAX HAX 107.8 108.7
HAA CAA HAAA 109.4 109.4
HAA CAA HAAB 109.5 109.5
HAAA CAA HAAB 109.5 109.4
HAB CAB HABA 109.5 109.5
HAB CAB HABB 109.4 109.4
HABA CAB HABB 109.5 109.5

Torsion Angles for CB9

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O C CA N 343.0 360.0
O C CA CB 108.6 120.0
CA C O H 180.0 180.3
O C CA HA 223.7 240.0
O C CA H 180.0 179.7
C CA N CAT 210.1 275.0
N CA C CB 234.4 240.0
C CA N HN 30.1 95.0
N CA C HA 119.3 120.0
C CA CB NAP 334.9 60.0
C CA CB SAQ 217.6 308.5
CB CA C HA 244.9 240.0
C CA CB HB 97.4 184.2
C CA N CB 122.1 120.0
N CA C H 163.0 180.3
C CA N HA 241.0 240.0
CA N CAT OAF 359.2 359.9
CA N CAT CAY 180.3 180.0
CAT N CA HN 180.0 180.0
N CA CB NAP 100.3 180.0
N CA CB SAQ 343.0 68.5
CB CA N HA 119.0 120.0
N CA CB HB 222.8 304.3
CAT N CA CB 88.0 155.0
CA N CAT HN 180.0 180.0
CAT N CA HA 329.0 35.0
OAF CAT N CAY 178.9 179.9
CAS CAY CAT N 274.6 60.0
N CAT CAY CAU 44.7 180.0
N CAT CAY HAY 159.9 300.0
C CA CB N 234.6 240.0
CB CA C H 288.6 300.3
C CA CB HA 115.2 120.0
CB CA N CAT 88.0 155.0
CB CA N HN 268.0 334.9
N CA CB HA 240.6 240.0
NAP CB CA SAQ 117.3 111.5
CA CB NAP CAX 266.3 199.7
NAP CB CA HB 237.5 235.8
CA CB NAP HNAP 27.2 323.5
CA CB SAQ CAZ 115.0 152.5
SAQ CB CA HB 120.2 124.3
CA CB NAP SAQ 234.9 242.1
NAP CB CA HA 219.7 300.0
CA CB NAP HB 121.7 124.2
NAP CB SAQ CAZ 352.5 34.6
SAQ CB NAP HB 246.8 242.0
CB NAP CAX CAR 191.4 270.9
CB NAP CAX CAZ 316.9 31.9
CAX NAP CB HNAP 239.1 236.1
CB NAP CAX HAX 71.8 152.6
CA CB SAQ NAP 122.5 117.9
SAQ CB CA HA 102.4 188.5
CA CB SAQ HB 238.5 235.8
SAQ CB NAP CAX 31.4 317.5
NAP CB SAQ HB 116.0 117.9
SAQ CB NAP HNAP 152.3 81.4
CAA CAZ SAQ CB 226.8 223.1
CAB CAZ SAQ CB 106.3 100.3
CB SAQ CAZ CAX 345.5 341.6
CB SAQ CAZ CAA 226.8 223.1
CAB CAZ CAA SAQ 120.2 122.9
CAB CAZ CAA CAX 235.2 236.9
CAA CAZ CAB HAB 180.0 60.7
CAA CAZ CAB HABA 300.0 180.7
CAA CAZ CAB HABB 60.0 300.8
NAP CAX CAZ CAA 149.7 114.6
SAQ CAZ CAA CAX 115.1 114.1
CAR CAX CAZ CAA 272.8 235.5
CAA CAZ CAX HAX 34.0 353.8
HAA CAA CAZ HAAA 240.1 240.0
HAA CAA CAZ HAAB 120.0 120.1
HAAA CAA CAZ HAAB 240.0 240.1
CB SAQ CAZ CAB 106.3 100.3
CAA CAZ CAB SAQ 240.0 237.1
CAA CAZ CAB CAX 123.8 123.0
CAB CAZ CAA HAA 180.0 59.3
CAB CAZ CAA HAAA 300.0 179.3
CAB CAZ CAA HAAB 60.0 299.2
NAP CAX CAZ CAB 273.2 237.6
SAQ CAZ CAB CAX 243.9 245.9
CAR CAX CAZ CAB 36.2 358.5
CAB CAZ CAX HAX 157.5 116.8
HAB CAB CAZ HABA 240.0 240.0
HAB CAB CAZ HABB 120.0 119.9
HABA CAB CAZ HABB 240.0 239.9
OAG CAR OAD CAX 181.6 180.1
OAD CAR OAG HOAG 360.0 360.0
NAP CAX CAR OAD 208.8 18.6
OAD CAR CAX CAZ 89.9 255.2
OAD CAR CAX HAX 328.9 137.0
OAH CAS OAE CAY 179.9 180.0
OAE CAS OAH HOAH 360.0 0.0
OAE CAS CAY CAT 28.5 360.0
OAE CAS CAY CAU 256.0 240.0
OAE CAS CAY HAY 143.2 120.0
N CAT OAF CAY 180.9 180.1
OAF CAT N HN 179.2 180.0
CAS CAY CAT OAF 95.6 240.0
OAF CAT CAY CAU 225.7 0.0
OAF CAT CAY HAY 340.9 120.0
OAD CAR OAG CAX 178.4 179.9
NAP CAX CAR OAG 27.3 198.5
OAG CAR CAX CAZ 268.4 75.2
OAG CAR CAX HAX 147.4 316.9
OAE CAS OAH CAY 180.1 180.0
OAH CAS CAY CAT 208.7 180.0
OAH CAS CAY CAU 76.1 60.0
OAH CAS CAY HAY 323.3 300.0
CAK CAJ CAL CAN 360.0 359.8
CAL CAJ CAK HAJ 180.0 180.4
CAK CAJ CAL HAL 180.0 180.0
CAJ CAK CAM CAU 359.2 360.0
CAM CAK CAJ HAK 180.0 180.1
CAJ CAK CAM HAM 179.2 179.9
CAL CAJ CAK CAM 0.1 0.1
CAK CAJ CAL HAJ 180.0 179.6
CAL CAJ CAK HAK 180.1 180.0
CAJ CAL CAN CAU 0.7 0.1
CAN CAL CAJ HAL 180.0 179.8
CAJ CAL CAN HAN 180.7 180.1
CAM CAK CAJ CAL 0.1 0.1
CAM CAK CAJ HAJ 180.1 179.7
CAJ CAK CAM HAK 180.0 179.9
CAK CAM CAU CAN 1.5 360.0
CAK CAM CAU CAY 178.9 180.0
CAU CAM CAK HAM 180.0 180.0
CAN CAL CAJ HAJ 180.0 180.2
CAJ CAL CAN HAL 180.0 180.2
CAM CAU CAN CAL 358.6 360.0
CAL CAN CAU CAY 181.3 180.0
CAU CAN CAL HAN 180.0 180.1
CAU CAM CAK HAK 179.2 180.1
CAK CAM CAU HAM 180.0 180.0
CAL CAN CAU CAM 358.6 360.0
CAN CAU CAM CAY 182.6 180.0
CAM CAU CAN HAN 178.6 180.0
CAS CAY CAU CAM 222.0 240.0
CAT CAY CAU CAM 89.8 120.0
CAM CAU CAY HAY 334.6 0.0
CAU CAN CAL HAL 180.7 179.9
CAL CAN CAU HAN 180.0 179.9
CAM CAU CAN CAY 177.3 180.0
CAN CAU CAM HAM 181.5 180.0
CAS CAY CAU CAN 39.3 60.0
CAT CAY CAU CAN 267.1 300.0
CAN CAU CAY HAY 152.0 180.0
CAX NAP CB SAQ 31.4 317.5
CAX NAP CB HB 144.6 75.5
CB NAP CAX HNAP 121.0 123.9
CAA CAZ CAX NAP 149.7 114.6
CAB CAZ CAX NAP 273.2 237.6
OAD CAR CAX NAP 208.8 18.6
OAG CAR CAX NAP 27.3 198.5
SAQ CAZ CAX NAP 32.0 356.1
CAR CAX NAP CAZ 234.5 239.1
CAR CAX NAP HAX 119.6 118.3
CAZ CAX NAP HAX 245.1 239.3
CAZ SAQ CB HB 236.5 276.7
CAA CAZ SAQ CAB 120.5 122.8
CAA CAZ SAQ CAX 241.3 241.5
SAQ CAZ CAA HAA 59.9 296.4
SAQ CAZ CAA HAAA 179.8 56.4
SAQ CAZ CAA HAAB 299.8 176.4
CAB CAZ SAQ CAX 120.8 118.6
SAQ CAZ CAB HAB 300.0 183.5
SAQ CAZ CAB HABA 60.0 303.6
SAQ CAZ CAB HABB 180.0 63.6
NAP CAX CAZ SAQ 32.0 356.1
CAR CAX CAZ SAQ 155.1 117.0
SAQ CAZ CAX HAX 276.3 235.3
CAA CAZ CAX CAR 272.8 235.5
CAB CAZ CAX CAR 36.2 358.5
OAD CAR CAX OAG 181.5 180.1
CAX CAR OAG HOAG 181.5 180.0
NAP CAX CAR CAZ 118.9 123.4
CAR CAX NAP HNAP 70.4 147.1
NAP CAX CAR HAX 239.9 241.6
SAQ CAZ CAX CAR 155.1 117.0
CAZ CAX CAR HAX 121.0 118.3
N CAT CAY CAS 274.6 60.0
OAE CAS CAY OAH 179.9 180.0
OAF CAT CAY CAS 95.6 240.0
CAY CAS OAH HOAH 179.9 180.0
CAM CAU CAY CAS 222.0 240.0
CAN CAU CAY CAS 39.3 60.0
CAT CAY CAS CAU 132.6 120.0
CAT CAY CAS HAY 245.4 240.0
CAU CAY CAS HAY 112.8 120.0
N CAT CAY OAF 179.0 179.9
CAY CAT N HN 0.3 0.1
CAM CAU CAY CAT 89.8 120.0
CAN CAU CAY CAT 267.1 300.0
CAS CAY CAT CAU 230.0 240.0
CAS CAY CAT HAY 114.7 120.0
CAU CAY CAT HAY 244.7 240.0
CAM CAU CAY CAN 182.7 180.0
CAY CAU CAM HAM 358.9 0.0
CAY CAU CAN HAN 1.3 0.0
CAS CAY CAU CAT 132.2 120.0
CAS CAY CAU HAY 247.3 240.0
CAT CAY CAU HAY 115.1 120.0
CAA CAZ CAX CAB 236.5 237.0
CAA CAZ CAX SAQ 117.7 118.5
CAX CAZ CAA HAA 304.8 182.4
CAX CAZ CAA HAAA 64.8 302.3
CAX CAZ CAA HAAB 184.8 62.3
CAB CAZ CAX SAQ 241.2 241.5
CAX CAZ CAB HAB 56.2 297.6
CAX CAZ CAB HABA 176.2 57.7
CAX CAZ CAB HABB 296.2 177.8
NAP CAX CAZ CAR 237.0 239.1
CAZ CAX NAP HNAP 195.9 268.0
NAP CAX CAZ HAX 115.7 120.8
CAR CAX CAZ HAX 238.7 241.7
O C H CA 180.0 180.3
H C CA N 163.0 180.3
H C CA CB 288.6 300.3
H C CA HA 43.7 60.3
CA N HN CAT 180.0 180.0
HN N CA CB 268.0 334.9
HN N CA HA 149.0 215.0
HN N CAT OAF 179.2 180.0
HN N CAT CAY 0.3 0.1
C CA HA N 122.4 120.0
C CA HA CB 245.1 240.0
HA CA C H 43.7 60.3
HA CA N CAT 329.0 35.0
N CA HA CB 122.7 120.0
HA CA N HN 149.0 215.0
HA CA CB NAP 219.7 300.0
HA CA CB SAQ 102.4 188.5
HA CA CB HB 342.2 64.2
CA CB HB NAP 236.5 235.8
CA CB HB SAQ 125.9 124.2
HB CB CA HA 342.2 64.2
NAP CB HB SAQ 249.5 248.5
HB CB NAP CAX 144.6 75.5
HB CB NAP HNAP 265.5 199.4
HB CB SAQ CAZ 236.5 276.7
HAA CAA CAZ CAB 180.0 59.3
HAA CAA CAZ SAQ 59.9 296.4
HAA CAA CAZ CAX 304.8 182.4
CAZ CAA HAA HAAA 120.0 120.0
CAZ CAA HAA HAAB 240.0 239.9
HAAA CAA HAA HAAB 120.0 119.9
HAAA CAA CAZ CAB 300.0 179.3
HAAA CAA CAZ SAQ 179.8 56.4
HAAA CAA CAZ CAX 64.8 302.3
CAZ CAA HAAA HAA 240.0 240.0
CAZ CAA HAAA HAAB 120.0 120.0
HAA CAA HAAA HAAB 240.0 240.0
HAAB CAA CAZ CAB 60.0 299.2
HAAB CAA CAZ SAQ 299.8 176.4
HAAB CAA CAZ CAX 184.8 62.3
CAZ CAA HAAB HAA 120.0 120.1
CAZ CAA HAAB HAAA 240.0 240.0
HAA CAA HAAB HAAA 120.0 119.9
HAB CAB CAZ SAQ 300.0 183.5
HAB CAB CAZ CAX 56.2 297.6
CAZ CAB HAB HABA 120.0 120.0
CAZ CAB HAB HABB 240.0 240.1
HABA CAB HAB HABB 120.0 120.0
HABA CAB CAZ SAQ 60.0 303.6
HABA CAB CAZ CAX 176.2 57.7
CAZ CAB HABA HAB 240.0 240.0
CAZ CAB HABA HABB 120.0 120.1
HAB CAB HABA HABB 240.0 240.0
HABB CAB CAZ SAQ 180.0 63.6
HABB CAB CAZ CAX 296.2 177.8
CAZ CAB HABB HAB 120.0 119.9
CAZ CAB HABB HABA 240.0 239.9
HAB CAB HABB HABA 120.0 120.0
HOAG OAG CAR CAX 181.5 180.0
HOAH OAH CAS CAY 179.9 180.0
CAK CAJ HAJ CAL 180.0 180.4
HAJ CAJ CAK CAM 180.1 179.7
HAJ CAJ CAK HAK 0.1 359.6
HAJ CAJ CAL CAN 180.0 180.2
HAJ CAJ CAL HAL 360.0 0.4
HAK CAK CAJ CAL 180.1 180.0
CAJ CAK HAK CAM 180.0 180.1
HAK CAK CAJ HAJ 0.1 359.6
HAK CAK CAM CAU 179.2 180.1
HAK CAK CAM HAM 359.2 0.0
CAJ CAL HAL CAN 180.0 179.8
HAL CAL CAJ HAJ 360.0 0.4
HAL CAL CAN CAU 180.7 179.9
HAL CAL CAN HAN 0.7 359.9
CAK CAM HAM CAU 180.0 180.0
HAM CAM CAK HAK 359.2 0.0
HAM CAM CAU CAN 181.5 180.0
HAM CAM CAU CAY 358.9 0.0
CAL CAN HAN CAU 180.0 180.1
HAN CAN CAL HAL 0.7 359.9
HAN CAN CAU CAY 1.3 0.0
HNAP NAP CB SAQ 152.3 81.4
CB NAP HNAP CAX 234.0 236.2
HNAP NAP CB HB 265.5 199.4
HNAP NAP CAX CAR 70.4 147.1
HNAP NAP CAX CAZ 195.9 268.0
HNAP NAP CAX HAX 310.8 28.7
NAP CAX HAX CAR 121.8 118.4
NAP CAX HAX CAZ 247.5 236.7
HAX CAX NAP HNAP 310.8 28.7
CAR CAX HAX CAZ 125.8 118.4
CAS CAY HAY CAT 238.6 240.0
CAS CAY HAY CAU 116.3 120.0
CAT CAY HAY CAU 237.7 240.0