PDB Chemical Component CB4
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CB4
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| B |
OB1 |
1.474 |
1.420 |
| B |
OB2 |
1.461 |
1.420 |
| B |
C7 |
1.545 |
1.570 |
| OB1 |
HB1O |
0.950 |
0.967 |
| OB2 |
HB2O |
0.950 |
0.966 |
| C7 |
N10 |
1.457 |
1.465 |
| C7 |
HC71 |
1.115 |
1.091 |
| C7 |
HC72 |
1.115 |
1.089 |
| N10 |
C11 |
1.326 |
1.347 |
| N10 |
H10N |
1.020 |
0.970 |
| C11 |
O12 |
1.235 |
1.215 |
| C11 |
C13 |
1.442 |
1.482 |
| C13 |
N16 |
1.342 |
1.303 |
| C13 |
C14 |
1.486 |
1.479 |
| N16 |
O17 |
1.468 |
1.417 |
| O17 |
C18 |
1.441 |
1.429 |
| C18 |
C19 |
1.544 |
1.530 |
| C18 |
C20 |
1.559 |
1.530 |
| C18 |
C21 |
1.544 |
1.507 |
| C14 |
C15 |
1.435 |
1.369 |
| C14 |
N19 |
1.371 |
1.332 |
| C15 |
S16 |
1.673 |
1.788 |
| C15 |
H15C |
1.104 |
1.080 |
| S16 |
C17 |
1.672 |
1.787 |
| C17 |
N18 |
1.398 |
1.384 |
| C17 |
N19 |
1.329 |
1.320 |
| N18 |
H181 |
1.019 |
0.971 |
| N18 |
H182 |
1.020 |
0.970 |
| C19 |
H191 |
1.115 |
1.089 |
| C19 |
H192 |
1.116 |
1.090 |
| C19 |
H193 |
1.114 |
1.090 |
| C20 |
H201 |
1.115 |
1.090 |
| C20 |
H202 |
1.115 |
1.090 |
| C20 |
H203 |
1.115 |
1.091 |
| C21 |
O2A |
1.281 |
1.209 |
| C21 |
O2B |
1.279 |
1.342 |
| O2B |
H2BO |
0.951 |
0.967 |
Bond Angles for CB4
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OB1 |
B |
OB2 |
109.4 |
120.0 |
| OB1 |
B |
C7 |
109.8 |
120.0 |
| B |
OB1 |
HB1O |
109.4 |
106.8 |
| OB2 |
B |
C7 |
109.9 |
120.0 |
| B |
OB2 |
HB2O |
109.5 |
106.8 |
| B |
C7 |
N10 |
108.0 |
109.4 |
| B |
C7 |
HC71 |
112.8 |
109.5 |
| B |
C7 |
HC72 |
112.7 |
109.5 |
| N10 |
C7 |
HC71 |
112.8 |
109.5 |
| N10 |
C7 |
HC72 |
112.8 |
109.5 |
| C7 |
N10 |
C11 |
122.2 |
120.0 |
| C7 |
N10 |
H10N |
123.7 |
120.0 |
| HC71 |
C7 |
HC72 |
97.7 |
109.5 |
| C11 |
N10 |
H10N |
114.1 |
120.0 |
| N10 |
C11 |
O12 |
120.8 |
120.0 |
| N10 |
C11 |
C13 |
119.3 |
120.0 |
| O12 |
C11 |
C13 |
119.9 |
120.0 |
| C11 |
C13 |
N16 |
124.8 |
120.0 |
| C11 |
C13 |
C14 |
123.8 |
120.0 |
| N16 |
C13 |
C14 |
111.4 |
119.9 |
| C13 |
N16 |
O17 |
113.7 |
120.0 |
| C13 |
C14 |
C15 |
124.7 |
120.4 |
| C13 |
C14 |
N19 |
129.2 |
120.4 |
| N16 |
O17 |
C18 |
110.1 |
106.8 |
| O17 |
C18 |
C19 |
108.2 |
109.5 |
| O17 |
C18 |
C20 |
110.3 |
109.4 |
| O17 |
C18 |
C21 |
110.3 |
109.5 |
| C19 |
C18 |
C20 |
107.4 |
109.5 |
| C19 |
C18 |
C21 |
109.5 |
109.5 |
| C18 |
C19 |
H191 |
108.2 |
109.4 |
| C18 |
C19 |
H192 |
112.7 |
109.5 |
| C18 |
C19 |
H193 |
112.7 |
109.5 |
| C20 |
C18 |
C21 |
111.0 |
109.5 |
| C18 |
C20 |
H201 |
110.3 |
109.5 |
| C18 |
C20 |
H202 |
111.9 |
109.5 |
| C18 |
C20 |
H203 |
111.8 |
109.4 |
| C18 |
C21 |
O2A |
118.3 |
120.0 |
| C18 |
C21 |
O2B |
118.6 |
120.0 |
| C15 |
C14 |
N19 |
106.1 |
119.2 |
| C14 |
C15 |
S16 |
113.5 |
100.7 |
| C14 |
C15 |
H15C |
116.6 |
129.7 |
| C14 |
N19 |
C17 |
117.5 |
121.1 |
| S16 |
C15 |
H15C |
129.9 |
129.6 |
| C15 |
S16 |
C17 |
91.2 |
97.3 |
| S16 |
C17 |
N18 |
124.4 |
129.2 |
| S16 |
C17 |
N19 |
111.7 |
101.6 |
| N18 |
C17 |
N19 |
123.9 |
129.1 |
| C17 |
N18 |
H181 |
124.3 |
120.0 |
| C17 |
N18 |
H182 |
106.9 |
120.1 |
| H181 |
N18 |
H182 |
106.9 |
120.0 |
| H191 |
C19 |
H192 |
112.6 |
109.5 |
| H191 |
C19 |
H193 |
112.8 |
109.5 |
| H192 |
C19 |
H193 |
97.7 |
109.5 |
| H201 |
C20 |
H202 |
111.9 |
109.5 |
| H201 |
C20 |
H203 |
111.9 |
109.4 |
| H202 |
C20 |
H203 |
98.5 |
109.5 |
| O2A |
C21 |
O2B |
123.1 |
120.0 |
| C21 |
O2B |
H2BO |
118.6 |
120.0 |
Torsion Angles for CB4
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OB2 |
B |
OB1 |
C7 |
120.7 |
180.0 |
| OB1 |
B |
OB2 |
HB2O |
179.9 |
0.0 |
| OB1 |
B |
C7 |
N10 |
26.8 |
0.0 |
| OB1 |
B |
C7 |
HC71 |
152.0 |
240.0 |
| OB1 |
B |
C7 |
HC72 |
261.5 |
120.0 |
| OB1 |
B |
OB2 |
C7 |
239.3 |
180.0 |
| OB2 |
B |
OB1 |
HB1O |
180.0 |
180.0 |
| OB2 |
B |
C7 |
N10 |
266.3 |
180.0 |
| OB2 |
B |
C7 |
HC71 |
31.6 |
60.0 |
| OB2 |
B |
C7 |
HC72 |
141.0 |
300.0 |
| OB1 |
B |
C7 |
OB2 |
120.5 |
180.0 |
| C7 |
B |
OB1 |
HB1O |
59.3 |
0.0 |
| C7 |
B |
OB2 |
HB2O |
300.6 |
180.0 |
| N10 |
C7 |
B |
HC71 |
234.7 |
120.0 |
| N10 |
C7 |
B |
HC72 |
125.3 |
240.0 |
| B |
C7 |
N10 |
C11 |
195.4 |
95.0 |
| B |
C7 |
N10 |
H10N |
15.4 |
275.0 |
| HC71 |
C7 |
B |
HC72 |
250.6 |
120.0 |
| HB1O |
OB1 |
B |
OB2 |
180.0 |
180.0 |
| HB1O |
OB1 |
B |
C7 |
59.3 |
0.0 |
| HB2O |
OB2 |
B |
C7 |
300.6 |
180.0 |
| B |
C7 |
N10 |
HC71 |
125.3 |
240.0 |
| B |
C7 |
N10 |
HC72 |
234.8 |
120.0 |
| HC71 |
C7 |
N10 |
HC72 |
109.5 |
240.0 |
| C11 |
N10 |
C7 |
H10N |
180.0 |
180.1 |
| C7 |
N10 |
C11 |
O12 |
359.8 |
5.5 |
| C7 |
N10 |
C11 |
C13 |
179.5 |
185.5 |
| B |
C7 |
HC71 |
N10 |
237.4 |
119.9 |
| B |
C7 |
HC71 |
HC72 |
118.6 |
240.0 |
| N10 |
C7 |
HC71 |
HC72 |
241.2 |
120.0 |
| HC71 |
C7 |
N10 |
C11 |
70.1 |
215.0 |
| HC71 |
C7 |
N10 |
H10N |
250.1 |
34.9 |
| B |
C7 |
HC72 |
N10 |
122.6 |
240.0 |
| B |
C7 |
HC72 |
HC71 |
241.4 |
120.0 |
| N10 |
C7 |
HC72 |
HC71 |
118.7 |
240.0 |
| HC72 |
C7 |
N10 |
C11 |
320.6 |
335.0 |
| HC72 |
C7 |
N10 |
H10N |
140.6 |
154.9 |
| C11 |
N10 |
C7 |
HC71 |
70.1 |
215.0 |
| C11 |
N10 |
C7 |
HC72 |
320.6 |
335.0 |
| C7 |
N10 |
C11 |
H10N |
180.0 |
179.9 |
| O12 |
C11 |
N10 |
C13 |
180.3 |
180.0 |
| N10 |
C11 |
C13 |
N16 |
58.9 |
186.8 |
| N10 |
C11 |
C13 |
C14 |
239.9 |
6.8 |
| H10N |
N10 |
C7 |
HC71 |
250.1 |
34.9 |
| H10N |
N10 |
C7 |
HC72 |
140.6 |
154.9 |
| C7 |
N10 |
H10N |
C11 |
180.0 |
180.1 |
| H10N |
N10 |
C11 |
O12 |
179.8 |
185.5 |
| H10N |
N10 |
C11 |
C13 |
359.5 |
5.5 |
| O12 |
C11 |
N10 |
H10N |
179.8 |
185.5 |
| N10 |
C11 |
O12 |
C13 |
179.7 |
180.0 |
| O12 |
C11 |
C13 |
N16 |
238.6 |
6.8 |
| O12 |
C11 |
C13 |
C14 |
59.6 |
186.8 |
| C13 |
C11 |
N10 |
H10N |
359.5 |
5.5 |
| N10 |
C11 |
C13 |
O12 |
180.3 |
180.0 |
| N16 |
C13 |
C11 |
C14 |
179.0 |
180.0 |
| C11 |
C13 |
N16 |
O17 |
28.9 |
353.8 |
| C11 |
C13 |
C14 |
C15 |
9.3 |
189.6 |
| C11 |
C13 |
C14 |
N19 |
188.4 |
9.3 |
| C11 |
C13 |
N16 |
C14 |
180.9 |
180.0 |
| N16 |
C13 |
C14 |
C15 |
190.2 |
9.6 |
| N16 |
C13 |
C14 |
N19 |
9.3 |
189.3 |
| C13 |
N16 |
O17 |
C18 |
184.9 |
180.0 |
| C11 |
C13 |
C14 |
N16 |
179.1 |
180.0 |
| C14 |
C13 |
N16 |
O17 |
208.0 |
173.8 |
| C15 |
C14 |
C13 |
N19 |
180.9 |
180.3 |
| C13 |
C14 |
C15 |
S16 |
179.0 |
180.0 |
| C13 |
C14 |
C15 |
H15C |
359.0 |
360.0 |
| C13 |
C14 |
N19 |
C17 |
181.0 |
179.8 |
| O17 |
N16 |
C13 |
C14 |
208.0 |
173.8 |
| N16 |
O17 |
C18 |
C19 |
183.8 |
300.0 |
| N16 |
O17 |
C18 |
C20 |
301.0 |
60.0 |
| N16 |
O17 |
C18 |
C21 |
64.0 |
180.0 |
| C19 |
C18 |
O17 |
C20 |
242.8 |
240.0 |
| C19 |
C18 |
O17 |
C21 |
119.8 |
120.0 |
| O17 |
C18 |
C19 |
H191 |
180.0 |
180.0 |
| O17 |
C18 |
C19 |
H192 |
305.2 |
300.0 |
| O17 |
C18 |
C19 |
H193 |
54.7 |
60.0 |
| C20 |
C18 |
O17 |
C21 |
237.0 |
240.0 |
| O17 |
C18 |
C20 |
H201 |
180.0 |
299.9 |
| O17 |
C18 |
C20 |
H202 |
305.3 |
60.0 |
| O17 |
C18 |
C20 |
H203 |
54.7 |
180.0 |
| O17 |
C18 |
C21 |
O2A |
33.5 |
0.1 |
| O17 |
C18 |
C21 |
O2B |
213.5 |
180.0 |
| O17 |
C18 |
C19 |
C20 |
119.1 |
120.0 |
| O17 |
C18 |
C19 |
C21 |
239.7 |
240.0 |
| C20 |
C18 |
C19 |
C21 |
120.6 |
120.0 |
| C19 |
C18 |
C20 |
H201 |
297.7 |
60.0 |
| C19 |
C18 |
C20 |
H202 |
63.0 |
180.0 |
| C19 |
C18 |
C20 |
H203 |
172.5 |
300.0 |
| C19 |
C18 |
C21 |
O2A |
274.6 |
240.1 |
| C19 |
C18 |
C21 |
O2B |
94.6 |
60.0 |
| H191 |
C19 |
C18 |
H192 |
234.8 |
240.0 |
| H191 |
C19 |
C18 |
H193 |
125.4 |
120.0 |
| H192 |
C19 |
C18 |
H193 |
250.6 |
240.0 |
| O17 |
C18 |
C20 |
C19 |
242.3 |
240.0 |
| O17 |
C18 |
C20 |
C21 |
122.6 |
120.0 |
| C19 |
C18 |
C20 |
C21 |
240.3 |
240.0 |
| C20 |
C18 |
C19 |
H191 |
60.9 |
60.0 |
| C20 |
C18 |
C19 |
H192 |
186.2 |
180.0 |
| C20 |
C18 |
C19 |
H193 |
295.6 |
300.0 |
| C20 |
C18 |
C21 |
O2A |
156.1 |
120.0 |
| C20 |
C18 |
C21 |
O2B |
336.1 |
300.0 |
| H201 |
C20 |
C18 |
H202 |
234.7 |
240.0 |
| H201 |
C20 |
C18 |
H203 |
125.2 |
120.0 |
| H202 |
C20 |
C18 |
H203 |
250.5 |
240.0 |
| O17 |
C18 |
C21 |
C19 |
119.0 |
120.0 |
| O17 |
C18 |
C21 |
C20 |
237.4 |
240.0 |
| C19 |
C18 |
C21 |
C20 |
118.4 |
120.0 |
| C21 |
C18 |
C19 |
H191 |
300.3 |
300.0 |
| C21 |
C18 |
C19 |
H192 |
65.5 |
60.0 |
| C21 |
C18 |
C19 |
H193 |
175.0 |
180.0 |
| C21 |
C18 |
C20 |
H201 |
57.4 |
180.0 |
| C21 |
C18 |
C20 |
H202 |
182.7 |
300.0 |
| C21 |
C18 |
C20 |
H203 |
292.2 |
60.0 |
| O2A |
C21 |
C18 |
O2B |
180.0 |
180.0 |
| C18 |
C21 |
O2B |
H2BO |
180.0 |
180.0 |
| C13 |
C14 |
C15 |
N19 |
179.3 |
179.7 |
| C15 |
C14 |
N19 |
C17 |
0.2 |
359.5 |
| S16 |
C15 |
C14 |
H15C |
180.0 |
180.0 |
| C14 |
C15 |
S16 |
C17 |
0.2 |
0.0 |
| C13 |
C14 |
N19 |
C15 |
180.8 |
180.3 |
| N19 |
C14 |
C15 |
S16 |
359.7 |
0.2 |
| N19 |
C14 |
C15 |
H15C |
179.7 |
180.2 |
| S16 |
C17 |
N19 |
C14 |
359.9 |
0.4 |
| N18 |
C17 |
N19 |
C14 |
179.9 |
180.2 |
| S16 |
C15 |
C14 |
N19 |
359.7 |
0.2 |
| C14 |
C15 |
S16 |
H15C |
180.0 |
180.0 |
| C15 |
S16 |
C17 |
N18 |
179.9 |
180.0 |
| C15 |
S16 |
C17 |
N19 |
359.9 |
359.8 |
| H15C |
C15 |
C14 |
N19 |
179.7 |
180.2 |
| C14 |
C15 |
H15C |
S16 |
180.0 |
180.0 |
| H15C |
C15 |
S16 |
C17 |
180.2 |
180.0 |
| C14 |
N19 |
C17 |
S16 |
359.9 |
0.4 |
| C17 |
S16 |
C15 |
H15C |
180.2 |
180.0 |
| N18 |
C17 |
S16 |
N19 |
180.0 |
180.2 |
| S16 |
C17 |
N18 |
H181 |
179.9 |
360.0 |
| S16 |
C17 |
N18 |
H182 |
54.7 |
179.9 |
| C14 |
N19 |
C17 |
N18 |
179.9 |
180.2 |
| S16 |
C17 |
N18 |
N19 |
180.0 |
179.7 |
| H181 |
N18 |
C17 |
H182 |
125.2 |
180.1 |
| S16 |
C17 |
N19 |
N18 |
180.0 |
180.2 |
| N19 |
C17 |
N18 |
H181 |
359.9 |
180.3 |
| N19 |
C17 |
N18 |
H182 |
234.7 |
0.2 |
| H181 |
N18 |
C17 |
N19 |
359.9 |
180.3 |
| C17 |
N18 |
H181 |
H182 |
234.8 |
179.9 |
| H182 |
N18 |
C17 |
N19 |
234.7 |
0.2 |
| C17 |
N18 |
H182 |
H181 |
135.1 |
180.1 |
| H191 |
C19 |
C18 |
C20 |
60.9 |
60.0 |
| H191 |
C19 |
C18 |
C21 |
300.3 |
300.0 |
| C18 |
C19 |
H191 |
H192 |
125.2 |
120.0 |
| C18 |
C19 |
H191 |
H193 |
234.7 |
240.0 |
| H192 |
C19 |
H191 |
H193 |
109.5 |
120.0 |
| H192 |
C19 |
C18 |
C20 |
186.2 |
180.0 |
| H192 |
C19 |
C18 |
C21 |
65.5 |
60.0 |
| C18 |
C19 |
H192 |
H191 |
237.2 |
240.0 |
| C18 |
C19 |
H192 |
H193 |
118.6 |
120.0 |
| H191 |
C19 |
H192 |
H193 |
241.3 |
240.0 |
| H193 |
C19 |
C18 |
C20 |
295.6 |
300.0 |
| H193 |
C19 |
C18 |
C21 |
175.0 |
180.0 |
| C18 |
C19 |
H193 |
H191 |
122.8 |
120.0 |
| C18 |
C19 |
H193 |
H192 |
241.4 |
240.0 |
| H191 |
C19 |
H193 |
H192 |
118.6 |
120.0 |
| H201 |
C20 |
C18 |
C21 |
57.4 |
180.0 |
| C18 |
C20 |
H201 |
H202 |
125.3 |
120.0 |
| C18 |
C20 |
H201 |
H203 |
234.8 |
240.0 |
| H202 |
C20 |
H201 |
H203 |
109.6 |
120.0 |
| H202 |
C20 |
C18 |
C21 |
182.7 |
300.0 |
| C18 |
C20 |
H202 |
H201 |
235.6 |
240.0 |
| C18 |
C20 |
H202 |
H203 |
117.7 |
120.0 |
| H201 |
C20 |
H202 |
H203 |
242.1 |
240.0 |
| H203 |
C20 |
C18 |
C21 |
292.2 |
60.0 |
| C18 |
C20 |
H203 |
H201 |
124.3 |
120.0 |
| C18 |
C20 |
H203 |
H202 |
242.2 |
240.0 |
| H201 |
C20 |
H203 |
H202 |
117.9 |
120.0 |
| C18 |
C21 |
O2A |
O2B |
180.0 |
180.0 |
| O2A |
C21 |
O2B |
H2BO |
0.1 |
360.0 |
| C18 |
C21 |
O2B |
O2A |
180.0 |
180.0 |