PDB Chemical Component CB3

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CB3

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.345 1.359
N1 C8A 1.355 1.383
N1 HN1 1.020 0.970
C2 NA2 1.331 1.367
C2 N3 1.355 1.316
NA2 HN21 1.019 0.970
NA2 HN22 1.020 0.970
N3 C4 1.357 1.340
C4 O4 1.377 1.219
C4 C4A 1.400 1.475
C4A C5 1.403 1.392
C4A C8A 1.408 1.405
C5 C6 1.416 1.378
C5 H5 1.102 1.080
C6 C7 1.417 1.387
C6 C9 1.482 1.507
C7 C8 1.414 1.380
C7 H7 1.104 1.080
C8 C8A 1.409 1.387
C8 H8 1.103 1.080
C9 N10 1.486 1.465
C9 H91 1.115 1.090
C9 H92 1.116 1.090
N10 C14 1.358 1.390
N10 CP1 1.464 1.465
C11 C12 1.414 1.398
C11 C16 1.392 1.397
C11 C 1.451 1.474
C12 C13 1.401 1.375
C12 H12 1.103 1.080
C13 C14 1.417 1.391
C13 H13 1.103 1.080
C14 C15 1.418 1.392
C15 C16 1.392 1.376
C15 H15 1.104 1.080
C16 H16 1.103 1.080
C O 1.233 1.216
C N 1.346 1.348
N CA 1.487 1.465
N HN 1.020 0.969
CA CB 1.533 1.530
CA CT 1.530 1.506
CA HA 1.115 1.090
CB CG 1.523 1.529
CB HB1 1.116 1.090
CB HB2 1.114 1.090
CG CD 1.526 1.507
CG HG1 1.115 1.090
CG HG2 1.115 1.090
CD OE1 1.256 1.208
CD OE2 1.254 1.342
OE2 HOE2 0.950 0.967
CT O1 1.246 1.209
CT O2 1.254 1.342
O2 HO2 0.949 0.967
CP1 CP2 1.450 1.472
CP1 HP11 1.115 1.090
CP1 HP12 1.116 1.090
CP2 CP3 1.200 1.174
CP3 HP3 1.090 1.050

Bond Angles for CB3

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C8A 122.3 120.3
C2 N1 HN1 107.7 119.8
N1 C2 NA2 121.0 118.6
N1 C2 N3 118.9 122.9
C8A N1 HN1 107.6 119.9
N1 C8A C4A 119.5 118.5
N1 C8A C8 120.5 121.8
NA2 C2 N3 120.1 118.5
C2 NA2 HN21 120.9 120.1
C2 NA2 HN22 108.1 120.0
C2 N3 C4 121.7 121.8
HN21 NA2 HN22 108.2 120.0
N3 C4 O4 117.9 120.8
N3 C4 C4A 120.0 118.4
O4 C4 C4A 122.1 120.8
C4 C4A C5 122.9 121.9
C4 C4A C8A 117.2 118.1
C5 C4A C8A 119.9 120.0
C4A C5 C6 120.9 119.5
C4A C5 H5 119.1 120.2
C4A C8A C8 119.9 119.7
C6 C5 H5 120.0 120.3
C5 C6 C7 118.9 120.4
C5 C6 C9 122.2 119.8
C7 C6 C9 116.7 119.8
C6 C7 C8 120.1 120.7
C6 C7 H7 120.0 119.7
C6 C9 N10 116.3 109.5
C6 C9 H91 109.7 109.5
C6 C9 H92 109.7 109.5
C8 C7 H7 119.9 119.6
C7 C8 C8A 120.2 119.7
C7 C8 H8 120.1 120.1
C8A C8 H8 119.8 120.2
N10 C9 H91 109.7 109.5
N10 C9 H92 109.7 109.4
C9 N10 C14 127.5 120.0
C9 N10 CP1 109.6 120.0
H91 C9 H92 100.4 109.5
C14 N10 CP1 122.9 120.1
N10 C14 C13 122.2 120.0
N10 C14 C15 118.9 119.9
N10 CP1 CP2 106.5 109.5
N10 CP1 HP11 113.3 109.4
N10 CP1 HP12 113.3 109.5
C12 C11 C16 120.4 119.8
C12 C11 C 122.9 120.1
C11 C12 C13 119.9 119.9
C11 C12 H12 120.5 120.0
C16 C11 C 116.8 120.1
C11 C16 C15 120.0 119.9
C11 C16 H16 120.0 120.0
C11 C O 122.5 120.0
C11 C N 115.9 120.0
C13 C12 H12 119.6 120.0
C12 C13 C14 120.0 120.1
C12 C13 H13 119.5 120.0
C14 C13 H13 120.5 119.9
C13 C14 C15 118.9 120.1
C14 C15 C16 120.8 120.1
C14 C15 H15 120.5 120.0
C16 C15 H15 118.7 120.0
C15 C16 H16 120.0 120.0
O C N 121.6 120.0
C N CA 128.2 120.0
C N HN 110.0 120.0
CA N HN 121.8 120.0
N CA CB 110.7 109.5
N CA CT 108.5 109.5
N CA HA 109.3 109.5
CB CA CT 109.8 109.5
CB CA HA 108.1 109.4
CA CB CG 114.6 109.5
CA CB HB1 110.3 109.4
CA CB HB2 110.4 109.5
CT CA HA 110.4 109.5
CA CT O1 117.3 120.0
CA CT O2 119.1 120.0
CG CB HB1 110.3 109.5
CG CB HB2 110.3 109.5
CB CG CD 113.3 109.5
CB CG HG1 110.8 109.5
CB CG HG2 110.8 109.5
HB1 CB HB2 99.9 109.5
CD CG HG1 110.8 109.4
CD CG HG2 110.8 109.5
CG CD OE1 119.4 120.0
CG CD OE2 118.0 120.0
HG1 CG HG2 99.5 109.5
OE1 CD OE2 122.6 120.0
CD OE2 HOE2 118.0 119.9
O1 CT O2 123.6 120.0
CT O2 HO2 119.1 120.1
CP2 CP1 HP11 113.3 109.5
CP2 CP1 HP12 113.3 109.5
CP1 CP2 CP3 176.5 180.0
HP11 CP1 HP12 97.1 109.4
CP2 CP3 HP3 180.0 179.9

Torsion Angles for CB3

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C8A N1 C2 HN1 125.3 179.8
C2 N1 C8A C4A 359.5 0.5
C2 N1 C8A C8 177.9 180.2
NA2 C2 N1 N3 180.6 180.2
N1 C2 NA2 HN21 180.0 179.7
N1 C2 NA2 HN22 54.7 359.6
N1 C2 N3 C4 0.1 0.2
C2 N1 C8A HN1 234.7 180.2
C8A N1 C2 NA2 183.1 179.7
C8A N1 C2 N3 2.5 359.5
C4 C4A C8A N1 356.1 359.7
C5 C4A C8A N1 175.5 179.7
C4A C8A N1 C8 181.6 180.4
C7 C8 C8A N1 183.7 180.3
N1 C8A C8 H8 3.7 0.3
C2 N1 HN1 C8A 133.6 179.8
HN1 N1 C2 NA2 57.8 359.8
HN1 N1 C2 N3 237.2 179.7
HN1 N1 C8A C4A 124.8 180.4
HN1 N1 C8A C8 303.2 360.0
NA2 C2 N1 C8A 183.1 179.7
NA2 C2 N1 HN1 57.8 359.8
N1 C2 NA2 N3 179.4 179.8
NA2 C2 N3 C4 179.5 180.1
HN21 NA2 C2 HN22 125.3 180.2
N3 C2 N1 C8A 2.5 359.5
N3 C2 N1 HN1 237.2 179.7
N1 C2 N3 NA2 180.6 180.2
N3 C2 NA2 HN21 0.6 359.9
N3 C2 NA2 HN22 235.3 179.7
C2 N3 C4 O4 173.7 180.0
C2 N3 C4 C4A 355.4 360.0
HN21 NA2 C2 N3 0.6 359.9
C2 NA2 HN21 HN22 234.7 179.8
HN22 NA2 C2 N3 235.3 179.7
C2 NA2 HN22 HN21 132.6 180.2
O4 C4 N3 C4A 178.3 180.1
N3 C4 C4A C5 187.0 180.0
N3 C4 C4A C8A 6.4 0.1
N3 C4 O4 C4A 181.7 179.9
O4 C4 C4A C5 8.7 360.0
O4 C4 C4A C8A 188.1 180.0
N1 C8A C4A C4 356.1 359.7
N3 C4 C4A O4 178.2 180.1
C5 C4A C4 C8A 180.6 179.9
C4 C4A C5 C6 180.0 180.0
C4 C4A C5 H5 360.0 360.0
C4 C4A C8A C8 177.7 180.0
N1 C8A C4A C5 175.5 179.7
C4 C4A C5 C8A 179.4 180.1
C5 C4A C8A C8 357.1 0.1
C6 C5 C4A H5 180.0 180.0
C4A C5 C6 C7 2.4 0.1
C4A C5 C6 C9 199.9 180.0
C4A C8A N1 HN1 124.8 180.4
N1 C8A C4A C8 178.4 179.6
C4 C4A C8A C5 180.6 179.9
C8A C4A C5 C6 0.6 359.9
C8A C4A C5 H5 180.6 179.9
C7 C8 C8A C4A 2.1 359.9
C4A C8A C8 H8 182.1 179.9
C6 C5 C4A C8A 0.6 359.9
C4A C5 C6 H5 180.0 180.0
C7 C6 C5 C9 162.6 180.1
C5 C6 C7 C8 356.8 359.9
C5 C6 C7 H7 176.8 180.0
C5 C6 C9 N10 6.9 90.0
C5 C6 C9 H91 132.3 210.0
C5 C6 C9 H92 241.7 330.0
H5 C5 C4A C8A 180.6 179.9
C4A C5 H5 C6 180.0 180.0
H5 C5 C6 C7 182.5 180.1
H5 C5 C6 C9 19.9 0.0
C7 C6 C5 H5 182.5 180.1
C5 C6 C7 C9 196.5 179.9
C7 C6 C9 N10 204.0 269.9
C7 C6 C9 H91 329.3 30.0
C7 C6 C9 H92 78.7 150.0
C8 C7 C6 H7 180.0 180.0
C6 C7 C8 C8A 1.0 0.0
C6 C7 C8 H8 180.9 180.0
C9 C6 C5 H5 19.9 0.0
C5 C6 C9 C7 162.9 180.1
C9 C6 C7 C8 160.3 180.0
C9 C6 C7 H7 340.3 0.0
N10 C9 C6 H91 234.7 240.0
N10 C9 C6 H92 125.3 120.0
C6 C9 N10 C14 60.9 270.1
C6 C9 N10 CP1 243.5 90.0
H91 C9 C6 H92 250.6 240.0
N1 C8A C8 C7 183.7 180.3
C4A C8A C8 C7 2.1 359.9
C8 C7 C6 C9 160.3 180.0
C6 C7 C8 H7 180.0 180.0
C8A C8 C7 H8 180.0 180.0
H7 C7 C6 C9 340.3 0.0
C6 C7 H7 C8 180.0 180.0
H7 C7 C8 C8A 181.0 180.0
H7 C7 C8 H8 0.9 0.0
C8 C8A N1 HN1 303.2 360.0
N1 C8A C8 C4A 181.6 180.4
C8A C8 C7 H7 181.0 180.0
C7 C8 C8A H8 180.0 180.0
H8 C8 C7 H7 0.9 0.0
C7 C8 H8 C8A 180.0 180.0
C6 C9 N10 H91 125.3 120.0
C6 C9 N10 H92 234.7 240.0
H91 C9 N10 H92 109.4 120.0
C14 N10 C9 CP1 177.4 180.1
C9 N10 C14 C13 204.8 354.8
C9 N10 C14 C15 24.6 174.6
C9 N10 CP1 CP2 99.9 95.2
C9 N10 CP1 HP11 225.2 215.1
C9 N10 CP1 HP12 334.7 335.1
C6 C9 H91 N10 231.0 240.0
C6 C9 H91 H92 115.5 120.0
N10 C9 H91 H92 244.5 240.0
H91 C9 N10 C14 295.6 150.0
H91 C9 N10 CP1 118.2 330.0
C6 C9 H92 N10 129.0 120.0
C6 C9 H92 H91 244.5 240.0
N10 C9 H92 H91 115.5 120.0
H92 C9 N10 C14 186.2 30.0
H92 C9 N10 CP1 8.7 210.0
C14 N10 C9 H91 295.6 150.0
C14 N10 C9 H92 186.2 30.0
C9 N10 C14 CP1 182.9 179.9
C14 N10 CP1 CP2 282.3 275.1
C14 N10 CP1 HP11 47.6 35.1
C14 N10 CP1 HP12 157.1 155.0
C12 C13 C14 N10 181.7 180.0
N10 C14 C13 H13 1.7 360.0
C13 C14 N10 C15 180.2 180.3
N10 C14 C15 C16 178.2 179.7
N10 C14 C15 H15 358.2 0.3
CP1 N10 C9 H91 118.2 330.0
CP1 N10 C9 H92 8.7 210.0
C9 N10 CP1 C14 177.6 180.1
CP1 N10 C14 C13 21.9 174.9
CP1 N10 C14 C15 201.7 354.6
CP2 CP1 N10 HP11 234.7 240.0
CP2 CP1 N10 HP12 125.2 120.1
N10 CP1 CP2 CP3 256.4 188.6
HP11 CP1 N10 HP12 250.5 240.0
C16 C11 C12 C 181.1 180.0
C12 C11 C16 C15 2.1 359.7
C12 C11 C16 H16 182.1 180.0
C12 C11 C O 168.6 360.0
C12 C11 C N 348.9 180.0
C13 C12 C11 H12 180.0 180.0
C11 C12 C13 C14 0.1 360.0
C11 C12 C13 H13 180.1 180.1
C12 C11 C16 C 179.0 180.0
C16 C11 C12 C13 357.8 0.0
C16 C11 C12 H12 177.9 180.0
C16 C11 C O 347.6 179.9
C16 C11 C N 167.9 360.0
C14 C15 C16 C11 360.0 0.6
C11 C16 C15 H15 179.9 180.0
C15 C16 C11 H16 180.0 179.7
C12 C11 C C16 181.0 180.0
C C11 C12 C13 176.8 180.0
C C11 C12 H12 356.8 360.0
C C11 C16 C15 183.1 179.7
C C11 C16 H16 3.1 0.0
O C C11 N 179.7 180.0
C11 C N CA 193.9 180.0
C11 C N HN 13.8 0.0
N10 C14 C13 C12 181.7 180.0
C13 C12 C11 C16 357.8 0.0
C13 C12 C11 C 176.8 180.0
C11 C12 C13 H12 180.0 180.0
C14 C13 C12 H13 180.0 179.9
C12 C13 C14 C15 1.9 0.3
H12 C12 C11 C16 177.9 180.0
H12 C12 C11 C 356.8 360.0
C11 C12 H12 C13 180.0 180.0
H12 C12 C13 C14 180.1 180.0
H12 C12 C13 H13 0.1 0.1
C13 C14 N10 CP1 21.9 174.9
N10 C14 C13 C15 179.8 179.7
C14 C13 C12 H12 180.1 180.0
C12 C13 C14 H13 180.0 180.1
C13 C14 C15 C16 358.0 359.4
C13 C14 C15 H15 178.1 180.0
H13 C13 C12 H12 0.1 0.1
C12 C13 H13 C14 180.0 179.9
H13 C13 C14 C15 181.9 180.2
C15 C14 N10 CP1 201.7 354.6
N10 C14 C15 C13 180.2 180.3
C11 C16 C15 C14 360.0 0.6
C15 C14 C13 H13 181.9 180.2
C16 C15 C14 H15 180.0 179.4
C14 C15 C16 H16 180.0 180.3
C15 C16 C11 C 183.1 179.7
C11 C16 C15 H16 180.0 180.3
C14 C15 C16 H15 180.0 180.6
C14 C15 H15 C16 180.0 179.4
H15 C15 C16 H16 359.9 359.7
H16 C16 C11 C 3.1 0.0
C11 C16 H16 C15 180.0 179.7
H16 C16 C15 H15 359.9 359.7
C11 C O N 180.4 180.0
O C N CA 14.2 360.0
O C N HN 194.2 180.1
C11 C N O 179.7 180.0
CA N C HN 180.0 179.9
C N CA CB 98.0 150.0
C N CA CT 218.5 270.0
C N CA HA 339.0 30.1
C N CA HN 180.0 180.1
CB CA N CT 239.4 240.0
CB CA N HA 119.0 119.9
N CA CB CG 277.4 300.1
N CA CB HB1 42.6 60.0
N CA CB HB2 152.1 180.0
CT CA N HA 239.6 239.9
N CA CT O1 131.6 149.9
N CA CT O2 312.4 330.0
C N HN CA 180.0 179.9
HN N CA CB 278.0 329.9
HN N CA CT 38.6 89.9
HN N CA HA 159.0 210.0
CB CA N HN 278.0 329.9
N CA CB CT 119.8 120.1
N CA CB HA 240.3 240.0
CT CA CB HA 120.4 120.0
CB CA CT O1 252.7 270.0
CB CA CT O2 73.5 90.1
CG CB CA HB1 234.8 240.0
CG CB CA HB2 125.3 120.1
CA CB CG CD 161.3 180.0
CA CB CG HG1 286.6 299.9
CA CB CG HG2 36.0 59.9
HB1 CB CA HB2 250.5 240.1
CT CA N HN 38.6 89.9
N CA CT CB 238.9 240.0
N CA CT HA 119.8 120.0
CB CA CT HA 240.9 240.1
CT CA CB CG 157.6 180.0
CT CA CB HB1 282.8 300.0
CT CA CB HB2 32.3 59.9
O1 CT CA O2 179.2 179.9
CA CT O2 HO2 180.0 179.9
HA CA N HN 159.0 210.0
N CA HA CB 120.6 119.9
N CA HA CT 240.7 239.9
CB CA HA CT 120.1 120.0
HA CA CB CG 37.1 60.0
HA CA CB HB1 162.4 180.0
HA CA CB HB2 271.9 299.9
HA CA CT O1 11.8 29.9
HA CA CT O2 192.6 210.0
CG CB CA CT 157.6 180.0
CG CB CA HA 37.1 60.0
CA CB CG HB1 125.2 119.9
CA CB CG HB2 234.7 239.9
HB1 CB CG HB2 109.5 120.0
CD CG CB HG1 234.7 240.0
CD CG CB HG2 125.2 120.0
CB CG CD OE1 18.5 360.0
CB CG CD OE2 199.9 180.0
HG1 CG CB HG2 250.5 240.0
HB1 CB CA CT 282.8 300.0
HB1 CB CA HA 162.4 180.0
CA CB HB1 CG 232.4 240.0
CA CB HB1 HB2 116.2 120.0
CG CB HB1 HB2 243.8 240.0
HB1 CB CG CD 36.0 60.0
HB1 CB CG HG1 161.3 180.0
HB1 CB CG HG2 270.8 300.0
HB2 CB CA CT 32.3 59.9
HB2 CB CA HA 271.9 299.9
CA CB HB2 CG 127.6 120.1
CA CB HB2 HB1 243.8 240.1
CG CB HB2 HB1 116.2 120.0
HB2 CB CG CD 286.5 300.0
HB2 CB CG HG1 51.8 60.0
HB2 CB CG HG2 161.3 180.0
CD CG CB HB1 36.0 60.0
CD CG CB HB2 286.5 300.0
CB CG CD HG1 125.3 120.0
CB CG CD HG2 234.7 239.9
HG1 CG CD HG2 109.4 120.0
OE1 CD CG OE2 178.6 179.9
CG CD OE2 HOE2 180.0 180.0
HG1 CG CB HB1 161.3 180.0
HG1 CG CB HB2 51.8 60.0
CB CG HG1 CD 233.3 240.0
CB CG HG1 HG2 116.7 120.0
CD CG HG1 HG2 243.4 240.0
HG1 CG CD OE1 253.2 240.0
HG1 CG CD OE2 74.6 60.0
HG2 CG CB HB1 270.8 300.0
HG2 CG CB HB2 161.3 180.0
CB CG HG2 CD 126.7 120.0
CB CG HG2 HG1 243.3 240.0
CD CG HG2 HG1 116.6 119.9
HG2 CG CD OE1 143.8 120.0
HG2 CG CD OE2 325.2 300.1
OE1 CD CG HG1 253.2 240.0
OE1 CD CG HG2 143.8 120.0
CG CD OE1 OE2 181.5 180.1
OE1 CD OE2 HOE2 1.5 0.1
OE2 CD CG HG1 74.6 60.0
OE2 CD CG HG2 325.2 300.1
CG CD OE2 OE1 178.5 179.9
O1 CT CA HA 11.8 29.9
CA CT O1 O2 180.8 180.1
O1 CT O2 HO2 0.8 0.0
O2 CT CA HA 192.6 210.0
CA CT O2 O1 179.2 179.9
N10 CP1 CP2 HP11 125.3 120.0
N10 CP1 CP2 HP12 234.8 240.0
HP11 CP1 CP2 HP12 109.5 120.0
CP1 CP2 CP3 HP3 335.7 191.0
N10 CP1 HP11 CP2 238.5 240.0
N10 CP1 HP11 HP12 119.3 120.0
CP2 CP1 HP11 HP12 240.8 240.0
HP11 CP1 CP2 CP3 131.1 68.6
N10 CP1 HP12 CP2 121.5 120.0
N10 CP1 HP12 HP11 240.7 240.0
CP2 CP1 HP12 HP11 119.3 120.0
HP12 CP1 CP2 CP3 21.6 308.6
CP3 CP2 CP1 HP11 131.1 68.6
CP3 CP2 CP1 HP12 21.6 308.6