PDB Chemical Component CB1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CB1
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
C1 |
1.414 |
1.381 |
| C |
C8 |
1.416 |
1.382 |
| C |
H1 |
1.080 |
1.079 |
| C1 |
C2 |
1.428 |
1.395 |
| C1 |
N |
1.386 |
1.480 |
| C2 |
C4 |
1.411 |
1.396 |
| C2 |
C3 |
1.522 |
1.478 |
| C4 |
C5 |
1.407 |
1.386 |
| C4 |
H41 |
1.080 |
1.080 |
| C5 |
C8 |
1.416 |
1.390 |
| C5 |
N6 |
1.429 |
1.398 |
| C8 |
N3 |
1.380 |
1.481 |
| N |
O1 |
1.218 |
1.218 |
| N |
O2 |
1.214 |
1.218 |
| C3 |
N1 |
1.358 |
1.347 |
| C3 |
O |
1.224 |
1.216 |
| N1 |
HN11 |
1.000 |
0.970 |
| N1 |
HN12 |
1.000 |
0.971 |
| N6 |
C7 |
1.490 |
1.469 |
| N6 |
C9 |
1.491 |
1.469 |
| C7 |
C9 |
1.514 |
1.530 |
| C7 |
H71 |
1.100 |
1.090 |
| C7 |
H72 |
1.100 |
1.089 |
| C9 |
H91 |
1.100 |
1.090 |
| C9 |
H92 |
1.100 |
1.090 |
| N3 |
O3 |
1.217 |
1.217 |
| N3 |
O4 |
1.219 |
1.218 |
Bond Angles for CB1
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C |
C8 |
122.6 |
120.2 |
| C1 |
C |
H1 |
118.7 |
119.9 |
| C |
C1 |
C2 |
118.3 |
120.0 |
| C |
C1 |
N |
118.5 |
120.0 |
| C8 |
C |
H1 |
118.7 |
119.9 |
| C |
C8 |
C5 |
118.3 |
120.2 |
| C |
C8 |
N3 |
120.0 |
119.9 |
| C2 |
C1 |
N |
123.2 |
120.0 |
| C1 |
C2 |
C4 |
119.1 |
119.8 |
| C1 |
C2 |
C3 |
122.6 |
120.2 |
| C1 |
N |
O1 |
117.7 |
120.0 |
| C1 |
N |
O2 |
119.2 |
120.1 |
| C4 |
C2 |
C3 |
118.2 |
120.1 |
| C2 |
C4 |
C5 |
121.8 |
119.8 |
| C2 |
C4 |
H41 |
119.1 |
120.1 |
| C2 |
C3 |
N1 |
120.4 |
120.0 |
| C2 |
C3 |
O |
118.2 |
120.0 |
| C5 |
C4 |
H41 |
119.1 |
120.1 |
| C4 |
C5 |
C8 |
119.7 |
120.0 |
| C4 |
C5 |
N6 |
119.5 |
120.0 |
| C8 |
C5 |
N6 |
120.7 |
120.0 |
| C5 |
C8 |
N3 |
121.8 |
119.9 |
| C5 |
N6 |
C7 |
119.9 |
106.7 |
| C5 |
N6 |
C9 |
119.3 |
106.7 |
| C8 |
N3 |
O3 |
118.2 |
120.0 |
| C8 |
N3 |
O4 |
118.6 |
119.9 |
| O1 |
N |
O2 |
123.1 |
120.0 |
| N1 |
C3 |
O |
121.4 |
120.0 |
| C3 |
N1 |
HN11 |
126.0 |
120.1 |
| C3 |
N1 |
HN12 |
108.0 |
120.0 |
| HN11 |
N1 |
HN12 |
126.0 |
119.9 |
| C7 |
N6 |
C9 |
61.0 |
62.8 |
| N6 |
C7 |
C9 |
59.5 |
58.6 |
| N6 |
C7 |
H71 |
136.2 |
117.6 |
| N6 |
C7 |
H72 |
131.2 |
117.6 |
| N6 |
C9 |
C7 |
59.5 |
58.6 |
| N6 |
C9 |
H91 |
136.3 |
117.6 |
| N6 |
C9 |
H92 |
131.2 |
117.7 |
| C9 |
C7 |
H71 |
136.3 |
117.6 |
| C9 |
C7 |
H72 |
131.2 |
117.7 |
| C7 |
C9 |
H91 |
136.3 |
117.6 |
| C7 |
C9 |
H92 |
131.2 |
117.7 |
| H71 |
C7 |
H72 |
74.4 |
115.7 |
| H91 |
C9 |
H92 |
74.3 |
115.8 |
| O3 |
N3 |
O4 |
123.3 |
120.0 |
Torsion Angles for CB1
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C8 |
C |
C1 |
H1 |
180.0 |
180.3 |
| C1 |
C |
C8 |
C5 |
3.4 |
359.8 |
| C1 |
C |
C8 |
N3 |
184.5 |
179.8 |
| C2 |
C1 |
C |
N |
181.1 |
180.5 |
| C |
C1 |
C2 |
C4 |
2.4 |
359.5 |
| C |
C1 |
C2 |
C3 |
183.0 |
179.7 |
| C |
C1 |
N |
O1 |
334.3 |
173.1 |
| C |
C1 |
N |
O2 |
156.6 |
353.1 |
| C1 |
C |
C8 |
H1 |
180.0 |
179.7 |
| C8 |
C |
C1 |
C2 |
357.4 |
0.5 |
| C8 |
C |
C1 |
N |
176.3 |
180.0 |
| C4 |
C5 |
C8 |
C |
355.9 |
360.0 |
| C |
C8 |
C5 |
N6 |
175.2 |
180.0 |
| C5 |
C8 |
C |
N3 |
178.9 |
180.0 |
| C |
C8 |
N3 |
O3 |
336.8 |
180.0 |
| C |
C8 |
N3 |
O4 |
155.0 |
360.0 |
| C1 |
C |
H1 |
C8 |
180.0 |
180.3 |
| H1 |
C |
C1 |
C2 |
177.4 |
180.3 |
| H1 |
C |
C1 |
N |
356.3 |
359.8 |
| H1 |
C |
C8 |
C5 |
183.4 |
180.0 |
| H1 |
C |
C8 |
N3 |
4.5 |
0.0 |
| C2 |
C1 |
C |
C8 |
357.4 |
0.5 |
| C2 |
C1 |
C |
H1 |
177.4 |
180.3 |
| C |
C1 |
C2 |
N |
178.8 |
179.5 |
| C2 |
C1 |
N |
O1 |
153.1 |
352.6 |
| C2 |
C1 |
N |
O2 |
335.4 |
172.6 |
| C4 |
C2 |
C1 |
C3 |
179.4 |
179.8 |
| C1 |
C2 |
C4 |
C5 |
356.7 |
0.2 |
| C1 |
C2 |
C4 |
H41 |
176.7 |
180.2 |
| C1 |
C2 |
C3 |
N1 |
263.9 |
125.0 |
| C1 |
C2 |
C3 |
O |
84.1 |
305.2 |
| N |
C1 |
C |
C8 |
176.3 |
180.0 |
| N |
C1 |
C |
H1 |
356.3 |
359.8 |
| C |
C1 |
N |
C2 |
181.2 |
180.5 |
| N |
C1 |
C2 |
C4 |
183.6 |
180.0 |
| N |
C1 |
C2 |
C3 |
4.2 |
0.2 |
| O1 |
N |
C1 |
O2 |
177.7 |
180.0 |
| C4 |
C2 |
C1 |
N |
183.6 |
180.0 |
| C1 |
C2 |
C4 |
C3 |
180.6 |
180.2 |
| C4 |
C2 |
C3 |
N1 |
84.5 |
305.3 |
| C4 |
C2 |
C3 |
O |
264.7 |
125.4 |
| C5 |
C4 |
C2 |
H41 |
180.0 |
180.0 |
| C2 |
C4 |
C5 |
C8 |
4.2 |
0.0 |
| C2 |
C4 |
C5 |
N6 |
184.9 |
180.0 |
| C3 |
C2 |
C1 |
N |
4.2 |
0.2 |
| C1 |
C2 |
C3 |
C4 |
179.4 |
179.8 |
| C3 |
C2 |
C4 |
C5 |
176.1 |
180.0 |
| C3 |
C2 |
C4 |
H41 |
356.1 |
360.0 |
| N1 |
C3 |
C2 |
O |
179.9 |
179.9 |
| C2 |
C3 |
N1 |
HN11 |
360.0 |
180.0 |
| C2 |
C3 |
N1 |
HN12 |
180.0 |
359.8 |
| C |
C8 |
C5 |
C4 |
355.9 |
360.0 |
| C5 |
C4 |
C2 |
C3 |
176.1 |
180.0 |
| C2 |
C4 |
C5 |
H41 |
180.0 |
180.0 |
| C8 |
C5 |
C4 |
N6 |
179.3 |
180.0 |
| C4 |
C5 |
C8 |
N3 |
174.8 |
180.0 |
| C4 |
C5 |
N6 |
C7 |
28.2 |
254.9 |
| C4 |
C5 |
N6 |
C9 |
99.7 |
320.8 |
| H41 |
C4 |
C2 |
C3 |
356.1 |
360.0 |
| C2 |
C4 |
H41 |
C5 |
180.0 |
180.0 |
| H41 |
C4 |
C5 |
C8 |
184.2 |
180.0 |
| H41 |
C4 |
C5 |
N6 |
4.9 |
0.0 |
| C5 |
C8 |
C |
H1 |
183.4 |
180.0 |
| C |
C8 |
C5 |
N3 |
181.1 |
180.0 |
| C8 |
C5 |
C4 |
H41 |
184.2 |
180.0 |
| C4 |
C5 |
C8 |
N6 |
180.7 |
180.0 |
| C8 |
C5 |
N6 |
C7 |
208.9 |
74.9 |
| C8 |
C5 |
N6 |
C9 |
280.4 |
140.8 |
| C5 |
C8 |
N3 |
O3 |
157.9 |
0.1 |
| C5 |
C8 |
N3 |
O4 |
336.2 |
180.0 |
| N6 |
C5 |
C4 |
H41 |
4.9 |
0.0 |
| C4 |
C5 |
N6 |
C8 |
179.3 |
180.0 |
| N6 |
C5 |
C8 |
N3 |
354.1 |
360.0 |
| C7 |
N6 |
C5 |
C9 |
288.6 |
294.1 |
| C5 |
N6 |
C7 |
C9 |
109.1 |
100.6 |
| C5 |
N6 |
C7 |
H71 |
342.4 |
207.7 |
| C5 |
N6 |
C7 |
H72 |
229.1 |
353.5 |
| C5 |
N6 |
C9 |
C7 |
250.0 |
259.5 |
| C5 |
N6 |
C9 |
H91 |
123.3 |
6.6 |
| C5 |
N6 |
C9 |
H92 |
9.9 |
152.4 |
| N3 |
C8 |
C |
H1 |
4.5 |
0.0 |
| C |
C8 |
N3 |
C5 |
178.9 |
180.0 |
| N3 |
C8 |
C5 |
N6 |
354.1 |
360.0 |
| O3 |
N3 |
C8 |
O4 |
181.8 |
180.1 |
| C1 |
N |
O1 |
O2 |
182.4 |
180.0 |
| C1 |
N |
O2 |
O1 |
177.5 |
180.0 |
| C2 |
C3 |
N1 |
O |
180.1 |
180.1 |
| HN11 |
N1 |
C3 |
HN12 |
180.0 |
180.3 |
| C2 |
C3 |
O |
N1 |
179.9 |
179.9 |
| O |
C3 |
N1 |
HN11 |
179.8 |
359.9 |
| O |
C3 |
N1 |
HN12 |
359.9 |
179.7 |
| HN11 |
N1 |
C3 |
O |
179.8 |
359.9 |
| C3 |
N1 |
HN11 |
HN12 |
180.0 |
179.7 |
| HN12 |
N1 |
C3 |
O |
359.9 |
179.7 |
| C3 |
N1 |
HN12 |
HN11 |
180.0 |
180.3 |
| C7 |
N6 |
C9 |
C7 |
360.0 |
-0.0 |
| C7 |
N6 |
C9 |
H91 |
233.3 |
107.1 |
| C7 |
N6 |
C9 |
H92 |
120.0 |
252.9 |
| C9 |
C7 |
N6 |
H71 |
126.7 |
252.9 |
| C9 |
C7 |
N6 |
H72 |
240.0 |
107.1 |
| N6 |
C7 |
C9 |
H91 |
126.7 |
252.9 |
| N6 |
C7 |
C9 |
H92 |
240.0 |
107.1 |
| H71 |
C7 |
N6 |
H72 |
113.3 |
214.2 |
| C9 |
N6 |
C7 |
C9 |
-0.0 |
-0.0 |
| C9 |
N6 |
C7 |
H71 |
233.3 |
107.1 |
| C9 |
N6 |
C7 |
H72 |
120.0 |
252.9 |
| N6 |
C9 |
C7 |
H71 |
126.6 |
252.9 |
| N6 |
C9 |
C7 |
H72 |
240.0 |
107.1 |
| C7 |
C9 |
N6 |
H91 |
126.7 |
252.9 |
| C7 |
C9 |
N6 |
H92 |
240.0 |
107.1 |
| H91 |
C9 |
N6 |
H92 |
113.3 |
214.2 |
| C9 |
C7 |
N6 |
C9 |
-0.0 |
-0.0 |
| N6 |
C7 |
C9 |
H71 |
233.4 |
107.1 |
| N6 |
C7 |
C9 |
H72 |
120.0 |
252.9 |
| N6 |
C9 |
C7 |
H91 |
233.3 |
107.1 |
| N6 |
C9 |
C7 |
H92 |
120.0 |
252.9 |
| H71 |
C7 |
C9 |
H72 |
246.6 |
145.8 |
| H91 |
C9 |
C7 |
H92 |
246.7 |
145.8 |
| H71 |
C7 |
N6 |
C9 |
233.3 |
107.1 |
| N6 |
C7 |
H71 |
C9 |
91.7 |
292.9 |
| N6 |
C7 |
H71 |
H72 |
225.9 |
146.4 |
| C9 |
C7 |
H71 |
H72 |
134.2 |
213.5 |
| H71 |
C7 |
C9 |
H91 |
253.3 |
145.9 |
| H71 |
C7 |
C9 |
H92 |
6.7 |
0.0 |
| H72 |
C7 |
N6 |
C9 |
120.0 |
252.9 |
| N6 |
C7 |
H72 |
C9 |
277.5 |
67.1 |
| N6 |
C7 |
H72 |
H71 |
138.7 |
213.6 |
| C9 |
C7 |
H72 |
H71 |
221.2 |
146.5 |
| H72 |
C7 |
C9 |
H91 |
6.7 |
0.0 |
| H72 |
C7 |
C9 |
H92 |
120.0 |
214.2 |
| N6 |
C9 |
H91 |
C7 |
91.7 |
292.9 |
| N6 |
C9 |
H91 |
H92 |
225.9 |
146.5 |
| H91 |
C9 |
C7 |
H71 |
253.3 |
145.9 |
| H91 |
C9 |
C7 |
H72 |
6.7 |
0.0 |
| C7 |
C9 |
H91 |
H92 |
134.1 |
213.5 |
| N6 |
C9 |
H92 |
C7 |
277.5 |
67.1 |
| N6 |
C9 |
H92 |
H91 |
138.8 |
213.6 |
| H92 |
C9 |
C7 |
H71 |
6.7 |
0.0 |
| H92 |
C9 |
C7 |
H72 |
120.0 |
214.2 |
| C7 |
C9 |
H92 |
H91 |
221.2 |
146.4 |
| C8 |
N3 |
O3 |
O4 |
178.1 |
179.9 |
| C8 |
N3 |
O4 |
O3 |
181.9 |
180.1 |