PDB Chemical Component CAR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CAR
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| P |
OP1 |
1.479 |
1.479 |
| P |
OP2 |
1.480 |
1.610 |
| P |
OP3 |
1.612 |
1.609 |
| P |
O5' |
1.613 |
1.611 |
| OP2 |
HOP2 |
0.950 |
0.967 |
| OP3 |
HOP3 |
0.950 |
0.967 |
| O5' |
C5' |
1.435 |
1.428 |
| C5' |
C4' |
1.526 |
1.529 |
| C5' |
H5' |
1.090 |
1.090 |
| C5' |
H5'' |
1.091 |
1.091 |
| C4' |
O4' |
1.436 |
1.445 |
| C4' |
C3' |
1.524 |
1.544 |
| C4' |
H4' |
1.089 |
1.090 |
| O4' |
C1' |
1.431 |
1.444 |
| C3' |
O3' |
1.437 |
1.429 |
| C3' |
C2' |
1.508 |
1.546 |
| C3' |
H3' |
1.095 |
1.091 |
| O3' |
HO3' |
0.961 |
0.968 |
| C2' |
O2' |
1.437 |
1.429 |
| C2' |
C1' |
1.524 |
1.544 |
| C2' |
H2' |
1.093 |
1.090 |
| O2' |
HO2' |
0.961 |
0.967 |
| C1' |
N1 |
1.482 |
1.465 |
| C1' |
H1' |
1.090 |
1.090 |
| N1 |
C2 |
1.390 |
1.345 |
| N1 |
C6 |
1.364 |
1.362 |
| C2 |
O2 |
1.227 |
1.220 |
| C2 |
N3 |
1.359 |
1.331 |
| N3 |
C4 |
1.333 |
1.326 |
| C4 |
N4 |
1.330 |
1.375 |
| C4 |
C5 |
1.431 |
1.410 |
| N4 |
HN41 |
1.015 |
0.970 |
| N4 |
HN42 |
1.009 |
0.970 |
| C5 |
C6 |
1.347 |
1.354 |
| C5 |
H5 |
1.090 |
1.081 |
| C6 |
H6 |
1.091 |
1.080 |
Bond Angles for CAR
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP1 |
P |
OP2 |
120.1 |
109.5 |
| OP1 |
P |
OP3 |
108.4 |
109.5 |
| OP1 |
P |
O5' |
108.5 |
109.5 |
| OP2 |
P |
OP3 |
108.3 |
109.5 |
| OP2 |
P |
O5' |
107.9 |
109.5 |
| P |
OP2 |
HOP2 |
120.0 |
106.8 |
| OP3 |
P |
O5' |
102.2 |
109.4 |
| P |
OP3 |
HOP3 |
108.4 |
106.9 |
| P |
O5' |
C5' |
121.0 |
106.8 |
| O5' |
C5' |
C4' |
111.4 |
109.5 |
| O5' |
C5' |
H5' |
109.2 |
109.4 |
| O5' |
C5' |
H5'' |
109.0 |
109.4 |
| C4' |
C5' |
H5' |
109.1 |
109.5 |
| C4' |
C5' |
H5'' |
109.0 |
109.4 |
| C5' |
C4' |
O4' |
111.9 |
110.4 |
| C5' |
C4' |
C3' |
111.3 |
110.5 |
| C5' |
C4' |
H4' |
109.5 |
110.3 |
| H5' |
C5' |
H5'' |
109.1 |
109.5 |
| O4' |
C4' |
C3' |
106.8 |
104.8 |
| O4' |
C4' |
H4' |
108.6 |
110.4 |
| C4' |
O4' |
C1' |
106.6 |
105.2 |
| C3' |
C4' |
H4' |
108.7 |
110.3 |
| C4' |
C3' |
O3' |
111.3 |
110.5 |
| C4' |
C3' |
C2' |
105.0 |
104.1 |
| C4' |
C3' |
H3' |
109.4 |
110.5 |
| O4' |
C1' |
C2' |
106.1 |
105.0 |
| O4' |
C1' |
N1 |
111.9 |
110.4 |
| O4' |
C1' |
H1' |
108.6 |
110.4 |
| O3' |
C3' |
C2' |
111.6 |
110.6 |
| O3' |
C3' |
H3' |
110.4 |
110.4 |
| C3' |
O3' |
HO3' |
107.3 |
106.8 |
| C2' |
C3' |
H3' |
108.9 |
110.6 |
| C3' |
C2' |
O2' |
110.5 |
110.5 |
| C3' |
C2' |
C1' |
105.1 |
104.0 |
| C3' |
C2' |
H2' |
110.0 |
110.5 |
| O2' |
C2' |
C1' |
111.1 |
110.5 |
| O2' |
C2' |
H2' |
110.3 |
110.5 |
| C2' |
O2' |
HO2' |
107.3 |
106.7 |
| C1' |
C2' |
H2' |
109.8 |
110.7 |
| C2' |
C1' |
N1 |
111.6 |
110.4 |
| C2' |
C1' |
H1' |
108.8 |
110.4 |
| N1 |
C1' |
H1' |
109.7 |
110.3 |
| C1' |
N1 |
C2 |
117.6 |
119.9 |
| C1' |
N1 |
C6 |
121.1 |
119.8 |
| C2 |
N1 |
C6 |
121.3 |
120.3 |
| N1 |
C2 |
O2 |
120.4 |
119.4 |
| N1 |
C2 |
N3 |
118.4 |
121.1 |
| N1 |
C6 |
C5 |
120.6 |
119.3 |
| N1 |
C6 |
H6 |
119.7 |
120.4 |
| O2 |
C2 |
N3 |
121.2 |
119.4 |
| C2 |
N3 |
C4 |
121.0 |
120.7 |
| N3 |
C4 |
N4 |
119.0 |
120.2 |
| N3 |
C4 |
C5 |
121.1 |
119.5 |
| N4 |
C4 |
C5 |
119.9 |
120.2 |
| C4 |
N4 |
HN41 |
119.9 |
120.0 |
| C4 |
N4 |
HN42 |
120.0 |
119.9 |
| C4 |
C5 |
C6 |
117.6 |
119.0 |
| C4 |
C5 |
H5 |
121.2 |
120.5 |
| HN41 |
N4 |
HN42 |
120.1 |
120.1 |
| C6 |
C5 |
H5 |
121.2 |
120.5 |
| C5 |
C6 |
H6 |
119.7 |
120.3 |
Torsion Angles for CAR
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP2 |
P |
OP1 |
OP3 |
125.1 |
120.0 |
| OP2 |
P |
OP1 |
O5' |
235.4 |
240.0 |
| OP1 |
P |
OP2 |
HOP2 |
180.0 |
299.9 |
| OP3 |
P |
OP1 |
O5' |
110.3 |
120.0 |
| OP1 |
P |
OP3 |
HOP3 |
180.0 |
180.0 |
| OP1 |
P |
O5' |
C5' |
41.3 |
60.0 |
| OP1 |
P |
OP2 |
OP3 |
234.9 |
239.9 |
| OP1 |
P |
OP2 |
O5' |
124.9 |
120.0 |
| OP3 |
P |
OP2 |
O5' |
250.0 |
240.0 |
| OP2 |
P |
OP3 |
HOP3 |
48.3 |
60.0 |
| OP2 |
P |
O5' |
C5' |
172.9 |
180.0 |
| OP1 |
P |
OP3 |
OP2 |
131.8 |
120.0 |
| OP1 |
P |
OP3 |
O5' |
245.5 |
240.0 |
| OP2 |
P |
OP3 |
O5' |
113.8 |
120.0 |
| OP3 |
P |
OP2 |
HOP2 |
305.1 |
60.0 |
| OP3 |
P |
O5' |
C5' |
287.0 |
299.9 |
| OP1 |
P |
O5' |
OP2 |
228.4 |
240.0 |
| OP1 |
P |
O5' |
OP3 |
114.4 |
120.0 |
| OP2 |
P |
O5' |
OP3 |
245.9 |
240.0 |
| O5' |
P |
OP2 |
HOP2 |
55.1 |
179.9 |
| O5' |
P |
OP3 |
HOP3 |
294.5 |
300.0 |
| P |
O5' |
C5' |
C4' |
174.9 |
180.0 |
| P |
O5' |
C5' |
H5' |
54.4 |
60.0 |
| P |
O5' |
C5' |
H5'' |
295.3 |
300.0 |
| HOP2 |
OP2 |
P |
OP3 |
305.1 |
60.0 |
| HOP2 |
OP2 |
P |
O5' |
55.1 |
179.9 |
| HOP3 |
OP3 |
P |
O5' |
294.5 |
300.0 |
| C4' |
C5' |
O5' |
H5' |
120.6 |
120.0 |
| C4' |
C5' |
O5' |
H5'' |
239.7 |
240.0 |
| O5' |
C5' |
C4' |
O4' |
295.6 |
61.4 |
| O5' |
C5' |
C4' |
C3' |
54.9 |
176.9 |
| O5' |
C5' |
C4' |
H4' |
175.1 |
299.2 |
| H5' |
C5' |
O5' |
H5'' |
119.1 |
120.0 |
| O5' |
C5' |
C4' |
H5' |
239.3 |
240.0 |
| O5' |
C5' |
C4' |
H5'' |
120.3 |
120.0 |
| H5' |
C5' |
C4' |
H5'' |
241.0 |
240.0 |
| O4' |
C4' |
C5' |
C3' |
240.7 |
244.5 |
| O4' |
C4' |
C5' |
H4' |
120.4 |
122.2 |
| C5' |
C4' |
O4' |
C1' |
152.7 |
159.5 |
| C3' |
C4' |
C5' |
H4' |
239.8 |
237.7 |
| C5' |
C4' |
C3' |
O3' |
100.5 |
98.3 |
| C5' |
C4' |
C3' |
C2' |
221.4 |
217.0 |
| C5' |
C4' |
C3' |
H3' |
338.2 |
335.8 |
| O5' |
C5' |
H5' |
C4' |
122.0 |
120.1 |
| O5' |
C5' |
H5' |
H5'' |
241.0 |
240.0 |
| C4' |
C5' |
H5' |
H5'' |
119.0 |
120.0 |
| H5' |
C5' |
C4' |
O4' |
56.2 |
181.4 |
| H5' |
C5' |
C4' |
C3' |
175.6 |
296.9 |
| H5' |
C5' |
C4' |
H4' |
295.8 |
59.2 |
| O5' |
C5' |
H5'' |
C4' |
238.2 |
240.0 |
| O5' |
C5' |
H5'' |
H5' |
119.2 |
119.9 |
| C4' |
C5' |
H5'' |
H5' |
241.0 |
240.0 |
| H5'' |
C5' |
C4' |
O4' |
175.3 |
301.4 |
| H5'' |
C5' |
C4' |
C3' |
294.6 |
56.9 |
| H5'' |
C5' |
C4' |
H4' |
54.8 |
179.2 |
| O4' |
C4' |
C5' |
H5' |
56.2 |
181.4 |
| O4' |
C4' |
C5' |
H5'' |
175.3 |
301.4 |
| C5' |
C4' |
O4' |
C3' |
122.0 |
119.0 |
| C5' |
C4' |
O4' |
H4' |
239.0 |
237.8 |
| C3' |
C4' |
O4' |
H4' |
117.0 |
118.8 |
| O4' |
C4' |
C3' |
O3' |
222.8 |
217.2 |
| O4' |
C4' |
C3' |
C2' |
343.8 |
335.9 |
| O4' |
C4' |
C3' |
H3' |
100.5 |
94.7 |
| C4' |
O4' |
C1' |
C2' |
327.3 |
319.6 |
| C4' |
O4' |
C1' |
N1 |
205.3 |
200.7 |
| C4' |
O4' |
C1' |
H1' |
84.1 |
78.5 |
| C3' |
C4' |
C5' |
H5' |
175.6 |
296.9 |
| C3' |
C4' |
C5' |
H5'' |
294.6 |
56.9 |
| C5' |
C4' |
C3' |
O4' |
237.6 |
241.1 |
| C5' |
C4' |
C3' |
H4' |
120.7 |
122.3 |
| O4' |
C4' |
C3' |
H4' |
243.1 |
241.2 |
| C3' |
C4' |
O4' |
C1' |
30.7 |
40.5 |
| O3' |
C3' |
C4' |
C2' |
239.1 |
241.3 |
| O3' |
C3' |
C4' |
H3' |
122.3 |
122.5 |
| C4' |
C3' |
O3' |
HO3' |
185.0 |
180.1 |
| C2' |
C3' |
C4' |
H3' |
243.2 |
241.2 |
| C4' |
C3' |
C2' |
O2' |
116.6 |
118.7 |
| C4' |
C3' |
C2' |
C1' |
356.8 |
0.1 |
| C4' |
C3' |
C2' |
H2' |
238.6 |
241.4 |
| H4' |
C4' |
C5' |
H5' |
295.8 |
59.2 |
| H4' |
C4' |
C5' |
H5'' |
54.8 |
179.2 |
| C5' |
C4' |
H4' |
O4' |
122.4 |
122.2 |
| C5' |
C4' |
H4' |
C3' |
238.2 |
237.6 |
| O4' |
C4' |
H4' |
C3' |
115.8 |
115.4 |
| H4' |
C4' |
O4' |
C1' |
273.6 |
281.7 |
| H4' |
C4' |
C3' |
O3' |
339.8 |
336.1 |
| H4' |
C4' |
C3' |
C2' |
100.7 |
94.8 |
| H4' |
C4' |
C3' |
H3' |
217.5 |
213.5 |
| C1' |
O4' |
C4' |
C3' |
30.7 |
40.5 |
| C1' |
O4' |
C4' |
H4' |
273.6 |
281.7 |
| C3' |
C2' |
C1' |
O4' |
21.7 |
23.9 |
| O2' |
C2' |
C1' |
O4' |
262.3 |
265.3 |
| O4' |
C1' |
C2' |
H2' |
140.0 |
142.5 |
| C2' |
C1' |
O4' |
N1 |
122.0 |
118.9 |
| C2' |
C1' |
O4' |
H1' |
243.2 |
241.1 |
| N1 |
C1' |
O4' |
H1' |
121.2 |
122.2 |
| O4' |
C1' |
N1 |
C2 |
220.0 |
205.4 |
| O4' |
C1' |
N1 |
C6 |
40.8 |
25.3 |
| O3' |
C3' |
C4' |
H4' |
339.8 |
336.1 |
| C4' |
C3' |
O3' |
C2' |
117.0 |
114.7 |
| C4' |
C3' |
O3' |
H3' |
238.3 |
237.4 |
| C2' |
C3' |
O3' |
H3' |
121.3 |
122.7 |
| O3' |
C3' |
C2' |
O2' |
237.3 |
237.4 |
| O3' |
C3' |
C2' |
C1' |
117.5 |
118.8 |
| O3' |
C3' |
C2' |
H2' |
359.4 |
0.0 |
| C2' |
C3' |
C4' |
H4' |
100.7 |
94.8 |
| C4' |
C3' |
C2' |
O3' |
239.3 |
241.3 |
| C4' |
C3' |
C2' |
H3' |
117.1 |
118.7 |
| O4' |
C1' |
C2' |
C3' |
21.7 |
23.9 |
| O3' |
C3' |
C2' |
H3' |
237.8 |
237.4 |
| C2' |
C3' |
O3' |
HO3' |
68.0 |
65.3 |
| O2' |
C2' |
C3' |
C1' |
119.8 |
118.6 |
| O2' |
C2' |
C3' |
H2' |
238.0 |
237.4 |
| C3' |
C2' |
O2' |
HO2' |
304.7 |
61.5 |
| C1' |
C2' |
C3' |
H2' |
118.1 |
118.8 |
| C3' |
C2' |
C1' |
N1 |
143.9 |
142.8 |
| C3' |
C2' |
C1' |
H1' |
265.1 |
264.9 |
| H3' |
C3' |
C4' |
H4' |
217.5 |
213.5 |
| C4' |
C3' |
H3' |
O3' |
122.8 |
122.6 |
| C4' |
C3' |
H3' |
C2' |
245.7 |
245.3 |
| O3' |
C3' |
H3' |
C2' |
122.9 |
122.7 |
| H3' |
C3' |
O3' |
HO3' |
306.7 |
302.6 |
| H3' |
C3' |
C2' |
O2' |
359.5 |
0.0 |
| H3' |
C3' |
C2' |
C1' |
239.7 |
241.5 |
| H3' |
C3' |
C2' |
H2' |
121.6 |
122.7 |
| HO3' |
O3' |
C3' |
C2' |
68.0 |
65.3 |
| HO3' |
O3' |
C3' |
H3' |
306.7 |
302.6 |
| O4' |
C1' |
C2' |
O2' |
262.3 |
265.3 |
| O2' |
C2' |
C3' |
H3' |
359.5 |
0.0 |
| C3' |
C2' |
O2' |
C1' |
243.8 |
245.5 |
| C3' |
C2' |
O2' |
H2' |
121.8 |
122.7 |
| C1' |
C2' |
O2' |
H2' |
238.0 |
237.2 |
| O2' |
C2' |
C1' |
N1 |
24.4 |
24.2 |
| O2' |
C2' |
C1' |
H1' |
145.6 |
146.3 |
| O4' |
C1' |
C2' |
N1 |
237.9 |
241.1 |
| O4' |
C1' |
C2' |
H1' |
116.7 |
118.9 |
| C1' |
C2' |
C3' |
H3' |
239.7 |
241.5 |
| C3' |
C2' |
C1' |
O2' |
119.4 |
118.6 |
| C3' |
C2' |
C1' |
H2' |
241.7 |
241.3 |
| O2' |
C2' |
C1' |
H2' |
122.3 |
122.7 |
| C1' |
C2' |
O2' |
HO2' |
60.8 |
176.0 |
| N1 |
C1' |
C2' |
H1' |
238.8 |
237.8 |
| C2' |
C1' |
N1 |
C2 |
101.2 |
89.9 |
| C2' |
C1' |
N1 |
C6 |
282.1 |
269.7 |
| H2' |
C2' |
C3' |
H3' |
121.6 |
122.7 |
| C3' |
C2' |
H2' |
O2' |
237.9 |
237.3 |
| C3' |
C2' |
H2' |
C1' |
115.2 |
114.6 |
| O2' |
C2' |
H2' |
C1' |
237.3 |
237.3 |
| H2' |
C2' |
O2' |
HO2' |
182.8 |
298.8 |
| H2' |
C2' |
C1' |
N1 |
262.1 |
261.5 |
| H2' |
C2' |
C1' |
H1' |
23.3 |
23.6 |
| HO2' |
O2' |
C2' |
C1' |
60.8 |
176.0 |
| HO2' |
O2' |
C2' |
H2' |
182.8 |
298.8 |
| O4' |
C1' |
N1 |
C2' |
118.8 |
115.6 |
| O4' |
C1' |
N1 |
H1' |
239.5 |
237.8 |
| N1 |
C1' |
C2' |
H2' |
262.1 |
261.5 |
| C2' |
C1' |
N1 |
H1' |
120.7 |
122.2 |
| C2 |
N1 |
C1' |
C6 |
179.1 |
180.2 |
| C1' |
N1 |
C2 |
O2 |
1.3 |
359.8 |
| C1' |
N1 |
C2 |
N3 |
181.1 |
180.0 |
| C1' |
N1 |
C6 |
C5 |
178.9 |
179.8 |
| C1' |
N1 |
C6 |
H6 |
359.0 |
0.0 |
| O4' |
C1' |
H1' |
C2' |
244.9 |
244.4 |
| O4' |
C1' |
H1' |
N1 |
122.5 |
122.2 |
| H1' |
C1' |
C2' |
H2' |
23.3 |
23.6 |
| C2' |
C1' |
H1' |
N1 |
237.6 |
237.8 |
| H1' |
C1' |
N1 |
C2 |
340.5 |
327.7 |
| H1' |
C1' |
N1 |
C6 |
161.4 |
147.5 |
| C2 |
N1 |
C1' |
H1' |
340.5 |
327.7 |
| C1' |
N1 |
C2 |
C6 |
180.9 |
179.8 |
| C2 |
N1 |
C6 |
C5 |
359.8 |
359.6 |
| C2 |
N1 |
C6 |
H6 |
179.8 |
179.9 |
| O2 |
C2 |
N1 |
N3 |
180.2 |
179.8 |
| N1 |
C2 |
N3 |
C4 |
359.9 |
359.9 |
| C6 |
N1 |
C1' |
H1' |
161.4 |
147.5 |
| C1' |
N1 |
C6 |
C2 |
179.1 |
180.2 |
| C6 |
N1 |
C2 |
O2 |
180.4 |
180.0 |
| C6 |
N1 |
C2 |
N3 |
0.2 |
0.2 |
| C4 |
C5 |
C6 |
N1 |
360.0 |
0.6 |
| N1 |
C6 |
C5 |
H5 |
180.0 |
180.0 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
179.7 |
| O2 |
C2 |
N1 |
C6 |
180.4 |
180.0 |
| N1 |
C2 |
O2 |
N3 |
179.8 |
180.2 |
| O2 |
C2 |
N3 |
C4 |
179.7 |
180.0 |
| N3 |
C2 |
N1 |
C6 |
0.2 |
0.2 |
| N1 |
C2 |
N3 |
O2 |
180.2 |
179.8 |
| C2 |
N3 |
C4 |
N4 |
179.3 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
359.9 |
0.3 |
| N4 |
C4 |
N3 |
C5 |
179.4 |
179.7 |
| N3 |
C4 |
N4 |
HN41 |
0.6 |
360.0 |
| N3 |
C4 |
N4 |
HN42 |
180.9 |
179.8 |
| N3 |
C4 |
C5 |
C6 |
0.2 |
359.5 |
| N3 |
C4 |
C5 |
H5 |
180.1 |
180.0 |
| N3 |
C4 |
N4 |
C5 |
180.6 |
180.3 |
| N4 |
C4 |
C5 |
C6 |
180.8 |
179.7 |
| N4 |
C4 |
C5 |
H5 |
0.7 |
0.3 |
| HN41 |
N4 |
C4 |
HN42 |
179.7 |
180.2 |
| N1 |
C6 |
C5 |
C4 |
360.0 |
0.6 |
| N3 |
C4 |
C5 |
N4 |
179.4 |
179.7 |
| C5 |
C4 |
N4 |
HN41 |
180.0 |
179.7 |
| C5 |
C4 |
N4 |
HN42 |
0.3 |
359.5 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.5 |
| C4 |
C5 |
C6 |
H6 |
179.9 |
180.3 |
| HN41 |
N4 |
C4 |
C5 |
180.0 |
179.7 |
| C4 |
N4 |
HN41 |
HN42 |
180.3 |
179.8 |
| HN42 |
N4 |
C4 |
C5 |
0.3 |
359.5 |
| C4 |
N4 |
HN42 |
HN41 |
179.7 |
180.2 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.3 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.5 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
179.5 |
| H5 |
C5 |
C6 |
H6 |
360.0 |
359.7 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
179.7 |
| H6 |
C6 |
C5 |
H5 |
360.0 |
359.7 |