PDB Chemical Component C9Z

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C9Z

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C44 O43 1.400 1.429
F33 C32 1.311 1.351
C34 C32 1.360 1.386
C34 C35 1.360 1.379
C32 C31 1.362 1.385
C41 C40 1.367 1.379
C41 C42 1.378 1.389
O43 C42 1.408 1.359
C35 C29 1.366 1.395
C40 C39 1.366 1.393
C42 C45 1.390 1.389
C31 C30 1.362 1.380
C29 C30 1.367 1.394
C29 C28 1.520 1.482
C39 C07 1.516 1.485
C39 C46 1.369 1.393
C08 C07 1.390 1.410
C08 C09 1.376 1.370
C45 C46 1.388 1.380
N19 C18 1.292 1.325
N19 C20 1.286 1.321
N17 C18 1.423 1.393
N17 C15 1.441 1.347
C07 C06 1.360 1.359
C18 C23 1.373 1.388
C20 C21 1.380 1.378
C09 C15 1.555 1.467
C09 N10 1.334 1.371
C15 O16 1.139 1.217
C28 C24 1.395 1.475
C28 N27 1.322 1.310
C23 C22 1.381 1.395
C21 C22 1.381 1.400
C22 C24 1.517 1.483
C06 N10 1.367 1.358
C06 C05 1.560 1.515
C24 C25 1.361 1.366
N10 C11 1.457 1.473
N27 O26 1.344 1.207
C05 N04 1.428 1.468
C38 C36 1.540 1.530
C11 C12 1.532 1.529
N04 C03 1.328 1.475
N04 C12 1.590 1.489
C25 O26 1.296 1.339
C25 C36 1.516 1.507
C03 C01 1.544 1.549
C12 C13 1.337 1.536
C13 C01 1.541 1.548
C13 O14 1.433 1.429
C36 C37 1.536 1.530
C01 O02 1.355 1.429
C13 H131 1.100 1.089
C20 H201 1.080 1.080
C21 H211 1.080 1.081
C01 H011 1.100 1.089
C03 H031 1.101 1.090
C03 H032 1.100 1.090
C05 H052 1.100 1.090
C05 H051 1.100 1.090
C08 H081 1.080 1.080
C11 H112 1.100 1.090
C11 H111 1.100 1.090
C12 H121 1.100 1.090
C23 H231 1.080 1.080
C30 H301 1.080 1.080
C31 H311 1.080 1.080
C34 H341 1.080 1.081
C35 H351 1.080 1.080
C36 H361 1.100 1.090
C37 H373 1.100 1.090
C37 H372 1.100 1.090
C37 H371 1.100 1.090
C38 H381 1.100 1.089
C38 H382 1.100 1.091
C38 H383 1.100 1.090
C40 H401 1.080 1.080
C41 H411 1.080 1.080
C44 H441 1.099 1.090
C44 H442 1.100 1.090
C44 H443 1.100 1.090
C45 H451 1.080 1.080
C46 H461 1.080 1.080
N17 H171 1.000 0.970
O02 H021 0.950 0.968
O14 H141 0.950 0.966

Bond Angles for C9Z

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O43 C44 H441 109.5 109.5
O43 C44 H442 109.5 109.5
O43 C44 H443 109.5 109.5
C35 C34 H341 120.6 120.0
C34 C35 H351 120.1 120.0
C32 C31 H311 120.1 119.9
C41 C40 H401 119.9 120.1
C41 C42 C45 119.3 120.1
C42 C41 H411 119.7 119.9
C40 C39 C46 120.0 119.9
C42 C45 C46 119.2 120.1
C42 C45 H451 120.4 119.9
C31 C30 H301 120.6 120.1
C29 C30 H301 120.6 120.0
C29 C28 N27 121.5 127.4
C39 C46 C45 120.4 120.0
C39 C46 H461 119.8 120.0
C08 C09 N10 108.7 107.9
C09 C08 H081 126.3 126.5
C46 C45 H451 120.4 120.0
C45 C46 H461 119.8 120.0
N19 C20 H201 119.2 119.5
N17 C15 O16 125.0 120.0
C07 C06 N10 108.9 108.7
C18 C23 H231 120.7 120.5
C20 C21 C22 119.7 119.2
C21 C20 H201 119.2 119.5
C20 C21 H211 120.2 120.4
C09 C15 O16 121.7 120.0
C06 N10 C09 108.3 108.9
C09 N10 C11 127.4 127.5
C28 C24 C25 104.9 103.0
C28 N27 O26 107.2 112.0
C21 C22 C24 122.2 120.9
C22 C21 H211 120.1 120.4
C22 C24 C25 125.9 128.5
C06 N10 C11 124.2 123.6
C06 C05 N04 114.8 106.6
C06 C05 H052 108.1 110.0
C06 C05 H051 108.1 110.1
C24 C25 O26 109.1 106.6
C24 C25 C36 128.0 126.7
N10 C11 H112 108.2 110.0
N10 C11 H111 108.2 110.1
C25 O26 N27 110.2 113.2
C05 N04 C12 115.6 109.4
N04 C05 H052 108.1 110.0
N04 C05 H051 108.2 110.1
C38 C36 H361 109.1 109.5
C12 C11 H112 108.2 110.0
C12 C11 H111 108.2 109.9
C11 C12 H121 108.1 110.4
N04 C03 H031 109.9 110.6
N04 C03 H032 109.8 110.7
N04 C12 H121 107.4 111.4
C36 C25 O26 123.0 126.6
C25 C36 C37 108.9 109.5
C25 C36 H361 109.5 109.5
C03 C01 O02 112.8 110.3
C03 C01 H011 109.6 110.4
C12 C13 O14 114.3 110.4
C12 C13 H131 112.8 110.5
C01 C13 O14 106.7 110.4
C13 C01 O02 111.7 110.3
C01 C13 H131 109.6 110.4
C13 C01 H011 109.6 110.4
O14 C13 H131 111.2 110.4
C13 O14 H141 109.5 113.9
C37 C36 H361 109.2 109.4
C36 C37 H373 109.5 109.5
C36 C37 H372 109.5 109.5
C36 C37 H371 109.5 109.4
O02 C01 H011 112.5 110.3
C01 O02 H021 109.5 114.0
H031 C03 H032 109.5 110.4
H052 C05 H051 109.4 110.0
H112 C11 H111 109.5 110.0
H373 C37 H372 109.4 109.5
H373 C37 H371 109.4 109.5
H372 C37 H371 109.5 109.5
H381 C38 H382 109.5 109.5
H381 C38 H383 109.5 109.5
H382 C38 H383 109.5 109.4
H441 C44 H442 109.4 109.5
H441 C44 H443 109.5 109.5
H442 C44 H443 109.5 109.4

Torsion Angles for C9Z

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H441 C44 O43 H442 240.0 240.0
H441 C44 O43 H443 120.0 120.0
H442 C44 O43 H443 239.9 240.0
F33 C32 C31 H311 359.7 360.0
C34 C32 C31 H311 179.7 179.9
C32 C31 C30 H301 182.5 180.1
C41 C40 C39 C46 357.6 0.2
C42 C41 C40 H401 181.0 180.0
C41 C42 C45 C46 1.6 359.7
C41 C42 C45 H451 181.6 180.0
O43 C42 C41 H411 359.1 359.9
O43 C42 C45 H451 1.8 0.0
C35 C29 C30 H301 175.5 180.2
C35 C29 C28 N27 232.5 139.0
C40 C39 C46 C45 3.4 359.5
C40 C39 C46 H461 183.4 179.8
C45 C42 C41 H411 179.3 180.0
C39 C46 C45 C42 357.0 0.5
C46 C45 C42 H451 180.0 179.8
C42 C45 C46 H461 177.0 180.3
C29 C30 C31 H301 180.0 179.9
C31 C30 C29 H301 180.0 180.1
C30 C29 C28 N27 45.8 319.2
C29 C28 N27 O26 175.9 179.8
C39 C07 C06 N10 184.0 179.4
C42 C45 C46 C39 357.0 0.5
C39 C46 C45 H451 177.0 180.3
C45 C46 C39 H461 180.0 179.8
C08 C07 C06 N10 358.8 359.5
C08 C09 C15 O16 171.0 353.7
C06 N10 C09 C08 358.9 359.4
C08 C09 N10 C11 179.3 178.7
C42 C45 C46 H451 180.0 180.2
C39 C46 C45 H461 180.0 180.2
C18 N19 C20 H201 183.7 179.7
N19 C18 C23 H231 183.5 180.0
C21 C20 N19 H201 180.0 179.8
N19 C20 C21 H211 178.2 180.2
C18 N17 C15 O16 3.0 5.6
N17 C18 C23 H231 356.3 0.2
C09 C15 N17 O16 181.6 179.9
C07 C06 N10 C09 1.4 0.7
C07 C06 N10 C11 181.1 181.4
C07 C06 C05 N04 189.4 196.5
C07 C06 C05 H052 310.2 315.8
C07 C06 C05 H051 68.6 77.2
N19 C20 C21 H201 180.0 180.2
C20 C21 C22 C24 179.7 180.1
C22 C21 C20 H211 180.0 180.0
N17 C15 C09 O16 178.5 180.1
N10 C09 C08 H081 180.3 180.3
N10 C09 C15 O16 347.3 173.8
C06 N10 C09 C11 179.6 180.7
C09 N10 C11 H112 314.7 78.1
C09 N10 C11 H111 73.2 316.7
C22 C24 C28 C25 183.3 179.7
C28 C24 C25 O26 2.4 359.7
C28 C24 C25 C36 181.2 179.8
N27 C28 C24 C25 357.2 0.3
C25 O26 N27 C28 359.4 360.0
C23 C22 C21 H211 180.7 180.0
C23 C22 C24 C25 34.6 294.2
C22 C21 C20 H201 178.2 180.0
C20 C21 C22 H211 180.0 180.0
C21 C22 C24 C25 215.6 114.2
C28 C24 C22 C25 176.1 180.3
C24 C22 C21 H211 359.7 0.0
C22 C24 C25 O26 179.3 180.0
C22 C24 C25 C36 358.1 0.1
C08 C09 N10 C06 358.9 359.4
C09 N10 C06 C11 180.4 179.3
N10 C06 C05 N04 11.2 16.1
N10 C06 C05 H052 132.0 135.3
N10 C06 C05 H051 250.4 256.7
C06 N10 C11 H112 135.1 257.3
C06 N10 C11 H111 253.6 135.9
C06 C05 N04 C12 325.4 306.9
N04 C05 C06 H052 239.2 240.8
N04 C05 C06 H051 120.8 119.4
H052 C05 C06 H051 241.6 238.6
C24 C25 O26 N27 358.8 0.2
C36 C25 C24 O26 178.8 180.1
C24 C25 C36 C37 137.3 120.0
C24 C25 C36 H361 18.0 360.0
C06 N10 C11 C09 180.4 179.2
C12 C11 N10 H112 239.2 119.3
C12 C11 N10 H111 120.7 240.7
N10 C11 C12 H121 82.3 69.4
H112 C11 N10 H111 241.5 121.4
C36 C25 O26 N27 179.9 180.1
C06 C05 N04 H052 120.8 119.2
C06 C05 N04 H051 239.2 240.6
C05 N04 C03 H031 272.5 41.5
C05 N04 C03 H032 33.0 278.8
C05 N04 C12 H121 289.3 314.8
H052 C05 N04 H051 118.4 121.4
C38 C36 C25 O26 77.9 60.1
C25 C36 C38 H361 119.0 120.0
C37 C36 C38 H361 239.0 240.1
C38 C36 C37 H373 180.0 300.0
C38 C36 C37 H372 300.0 60.0
C38 C36 C37 H371 60.0 180.0
C09 N10 C11 C12 193.9 197.4
C06 N10 C11 C12 14.3 16.6
N10 C11 C12 H112 120.8 240.7
N10 C11 C12 H111 239.3 119.4
C05 N04 C12 C11 48.2 76.3
N04 C12 C11 H121 241.5 237.9
C11 C12 C13 O14 284.3 261.8
C11 C12 C13 H131 52.5 24.3
H112 C11 C12 H111 118.5 238.7
N04 C03 C01 O02 259.2 217.2
N04 C03 C01 H011 133.1 95.0
H031 C03 N04 H032 239.5 122.7
C12 N04 C05 H052 204.7 187.7
C12 N04 C05 H051 86.2 66.4
N04 C12 C11 H112 203.0 66.6
N04 C12 C11 H111 84.5 187.9
C11 C12 N04 H121 118.9 121.5
C12 N04 C03 H031 128.5 282.5
C12 N04 C03 H032 249.0 159.9
N04 C12 C13 O14 161.8 145.1
N04 C12 C13 H131 290.0 267.6
C28 N27 O26 C25 359.4 360.0
C24 C25 O26 C36 178.9 180.1
O26 C25 C36 C37 316.0 300.1
O26 C25 C36 H361 196.7 180.1
C24 C25 C36 O26 181.3 179.9
C38 C36 C25 H361 241.2 240.0
C37 C36 C25 H361 119.3 120.0
C25 C36 C37 H373 299.6 60.0
C25 C36 C37 H372 59.6 180.0
C25 C36 C37 H371 179.6 300.0
C03 C01 C13 O14 197.7 239.7
C13 C01 C03 O02 118.8 118.8
C03 C01 C13 H131 77.3 117.3
C13 C01 C03 H011 244.9 241.1
O02 C01 C03 H011 126.1 122.2
C03 C01 O02 H021 180.0 295.5
C01 C13 C12 O14 245.5 241.2
C12 C13 C01 O02 77.3 117.3
C01 C13 C12 H131 117.3 118.8
C12 C13 C01 H011 202.6 239.5
O14 C13 C12 H131 231.8 237.5
C12 C13 O14 H141 180.0 183.4
C03 C01 C13 O02 240.4 241.1
C03 C01 C13 H011 115.1 119.0
C12 C13 C01 O14 120.0 118.7
C12 C13 C01 H131 240.5 241.1
O14 C13 C01 H131 120.4 122.4
C01 C13 O14 H141 291.5 298.5
O02 C01 C13 H011 234.7 237.8
C13 C01 O02 H021 68.2 180.0
C12 C13 O14 H131 129.0 122.6
O14 C13 C01 O02 317.3 358.6
C01 C13 O14 H131 240.6 237.6
O14 C13 C01 H011 82.6 120.7
C38 C36 C37 H361 121.0 120.0
C37 C36 C25 O26 316.0 300.1
C25 C36 C37 H361 240.5 240.0
H373 C37 C36 H372 240.0 240.0
H373 C37 C36 H371 120.0 119.9
H372 C37 C36 H371 240.0 240.0
C03 C01 O02 H011 235.5 237.7
O02 C01 C13 O14 317.3 358.6
O02 C01 C13 H131 196.9 236.2
C13 C01 O02 H011 123.7 122.2
C12 C13 H131 O14 230.2 237.5
C01 C13 H131 O14 117.7 122.4
H131 C13 C01 O02 196.9 236.2
H131 C13 C01 H011 322.2 358.3
H131 C13 O14 H141 50.9 60.9
H201 C20 C21 C22 178.2 180.0
H201 C20 C21 H211 358.2 0.1
C20 C21 H211 C22 180.0 180.0
H211 C21 C20 H201 358.2 0.1
H211 C21 C22 C24 359.7 0.0
C03 C01 H011 O02 126.3 122.3
H011 C01 C13 O14 82.6 120.7
C13 C01 H011 O02 235.1 237.9
H011 C01 C13 H131 322.2 358.3
H011 C01 O02 H021 304.5 57.8
N04 C03 H031 H032 120.7 237.2
H031 C03 C01 O02 139.5 335.9
H031 C03 C01 H011 13.4 213.6
N04 C03 H032 H031 239.3 122.8
H032 C03 C01 O02 19.0 98.4
H032 C03 C01 H011 252.9 336.2
C06 C05 H052 N04 235.2 242.9
C06 C05 H052 H051 117.6 121.5
H052 C05 N04 C12 204.7 187.7
N04 C05 H052 H051 242.4 238.6
C06 C05 H051 N04 124.9 117.2
C06 C05 H051 H052 242.4 238.6
H051 C05 N04 C12 86.2 66.4
N04 C05 H051 H052 117.6 121.4
H081 C08 C09 N10 180.3 180.3
N10 C11 H112 H111 117.6 238.6
C12 C11 H112 H111 242.4 121.3
H112 C11 C12 H121 321.6 188.7
N10 C11 H111 H112 242.4 121.3
C12 C11 H111 H112 117.7 238.7
H111 C11 C12 H121 203.1 310.0
H121 C12 C11 H112 321.6 188.7
H121 C12 C11 H111 203.1 310.0
H121 C12 C13 O14 47.8 25.4
H121 C12 C13 H131 176.0 147.9
H311 C31 C30 H301 2.4 0.1
H341 C34 C35 H351 358.0 359.8
H351 C35 C34 H341 358.0 359.8
H361 C36 C25 O26 196.7 180.1
C25 C36 H361 C37 119.1 120.0
H361 C36 C37 H373 59.0 180.0
H361 C36 C37 H372 179.0 300.0
H361 C36 C37 H371 299.0 60.1
H373 C37 C36 H361 59.0 180.0
C36 C37 H373 H372 120.0 120.0
C36 C37 H373 H371 240.0 240.1
H372 C37 H373 H371 120.0 120.1
H372 C37 C36 H361 179.0 300.0
C36 C37 H372 H373 240.0 240.0
C36 C37 H372 H371 120.0 120.0
H373 C37 H372 H371 240.0 240.0
H371 C37 C36 H361 299.0 60.1
C36 C37 H371 H373 120.0 120.0
C36 C37 H371 H372 240.0 240.0
H373 C37 H371 H372 120.0 120.1
H381 C38 C36 H361 61.0 179.9
H382 C38 H381 H383 120.0 119.9
H382 C38 C36 H361 181.0 300.0
H381 C38 H382 H383 240.0 240.1
H383 C38 C36 H361 301.0 59.9
H381 C38 H383 H382 120.0 120.0
H401 C40 C39 C46 177.6 180.2
H411 C41 C40 H401 1.0 0.0
H411 C41 C42 C45 179.3 180.0
O43 C44 H441 H442 120.0 120.0
O43 C44 H441 H443 240.0 240.0
H442 C44 H441 H443 120.0 120.0
O43 C44 H442 H441 240.0 240.0
O43 C44 H442 H443 120.0 120.0
H441 C44 H442 H443 240.0 240.0
O43 C44 H443 H441 120.0 120.0
O43 C44 H443 H442 240.0 240.0
H441 C44 H443 H442 120.0 120.0
C42 C45 H451 C46 180.0 179.8
H451 C45 C46 H461 357.0 0.1
C39 C46 H461 C45 180.0 179.8
H461 C46 C45 H451 357.0 0.1
H171 N17 C15 O16 183.0 185.6
H021 O02 C01 H011 304.5 57.8
H141 O14 C13 H131 50.9 60.9