PDB Chemical Component C9Y
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for C9Y
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C |
C1 |
1.513 |
1.507 |
C1 |
N |
1.467 |
1.465 |
O3 |
C17 |
1.220 |
1.218 |
N |
C17 |
1.399 |
1.347 |
N |
C2 |
1.375 |
1.365 |
C17 |
C16 |
1.484 |
1.470 |
C2 |
C3 |
1.334 |
1.344 |
C3 |
C4 |
1.436 |
1.462 |
C16 |
N4 |
1.351 |
1.327 |
C16 |
C4 |
1.414 |
1.412 |
N4 |
C7 |
1.348 |
1.322 |
C4 |
C5 |
1.401 |
1.402 |
C7 |
C8 |
1.477 |
1.483 |
C7 |
C6 |
1.392 |
1.402 |
N3 |
C8 |
1.366 |
1.341 |
N3 |
N2 |
1.314 |
1.287 |
C5 |
C6 |
1.383 |
1.367 |
C8 |
C9 |
1.373 |
1.363 |
N2 |
N1 |
1.357 |
1.402 |
C9 |
N1 |
1.354 |
1.354 |
N1 |
C10 |
1.437 |
1.404 |
C10 |
C15 |
1.394 |
1.388 |
C10 |
C11 |
1.396 |
1.388 |
C15 |
C14 |
1.370 |
1.383 |
C11 |
C12 |
1.390 |
1.380 |
C14 |
F |
1.352 |
1.352 |
C14 |
C13 |
1.404 |
1.389 |
C12 |
C13 |
1.401 |
1.387 |
C13 |
O4 |
1.355 |
1.360 |
C5 |
H1 |
1.080 |
1.080 |
C6 |
H2 |
1.080 |
1.080 |
C9 |
H3 |
1.080 |
1.080 |
C11 |
H4 |
1.080 |
1.080 |
C12 |
H5 |
1.080 |
1.080 |
C15 |
H6 |
1.080 |
1.080 |
C1 |
H10 |
1.100 |
1.090 |
C1 |
H11 |
1.100 |
1.090 |
C2 |
H12 |
1.080 |
1.080 |
C3 |
H13 |
1.080 |
1.080 |
O4 |
H14 |
0.950 |
0.967 |
C |
O1 |
|
1.343 |
C |
O2 |
|
1.208 |
O1 |
H7 |
|
0.967 |
Bond Angles for C9Y
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C |
C1 |
H10 |
108.7 |
109.5 |
C |
C1 |
H11 |
108.7 |
109.5 |
C1 |
C |
O1 |
|
120.0 |
C1 |
C |
O2 |
|
120.0 |
C1 |
N |
C17 |
118.4 |
118.9 |
C1 |
N |
C2 |
119.0 |
118.8 |
O3 |
C17 |
N |
120.4 |
120.3 |
O3 |
C17 |
C16 |
124.6 |
120.4 |
C17 |
N |
C2 |
122.6 |
122.3 |
N |
C17 |
C16 |
115.0 |
119.3 |
N |
C2 |
C3 |
122.9 |
122.3 |
N |
C2 |
H12 |
118.5 |
118.9 |
C3 |
C2 |
H12 |
118.5 |
118.8 |
C2 |
C3 |
H13 |
119.8 |
120.3 |
C4 |
C5 |
C6 |
120.9 |
118.1 |
C4 |
C5 |
H1 |
119.5 |
120.9 |
C7 |
C8 |
C9 |
129.7 |
125.7 |
C7 |
C6 |
H2 |
120.9 |
120.1 |
C6 |
C5 |
H1 |
119.6 |
120.9 |
C5 |
C6 |
H2 |
121.0 |
120.2 |
C8 |
C9 |
H3 |
127.1 |
126.6 |
N2 |
N1 |
C10 |
120.0 |
126.7 |
C9 |
N1 |
C10 |
130.0 |
126.6 |
N1 |
C10 |
C15 |
118.1 |
120.0 |
N1 |
C10 |
C11 |
121.9 |
120.0 |
C11 |
C10 |
C15 |
119.9 |
120.0 |
C10 |
C15 |
C14 |
118.8 |
119.9 |
C10 |
C15 |
H6 |
120.6 |
120.1 |
C10 |
C11 |
C12 |
120.2 |
120.0 |
C10 |
C11 |
H4 |
119.9 |
120.0 |
C15 |
C14 |
F |
119.6 |
120.0 |
C11 |
C12 |
C13 |
120.9 |
120.1 |
C12 |
C11 |
H4 |
119.9 |
120.0 |
C11 |
C12 |
H5 |
119.6 |
120.0 |
C14 |
C13 |
O4 |
122.6 |
120.1 |
C12 |
C13 |
O4 |
120.5 |
120.0 |
C13 |
C12 |
H5 |
119.5 |
120.0 |
C13 |
O4 |
H14 |
109.5 |
114.0 |
H10 |
C1 |
H11 |
109.5 |
109.5 |
O1 |
C |
O2 |
|
120.0 |
C |
O1 |
H7 |
|
117.0 |
Torsion Angles for C9Y
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C |
C1 |
N |
C17 |
275.2 |
90.0 |
C |
C1 |
N |
C2 |
95.3 |
269.8 |
H10 |
C1 |
C |
H11 |
240.9 |
120.0 |
O1 |
C |
C1 |
O2 |
|
179.9 |
C1 |
C |
O1 |
H7 |
|
180.0 |
O3 |
C17 |
N |
C1 |
360.0 |
0.0 |
C17 |
N |
C1 |
C2 |
179.9 |
180.1 |
C1 |
N |
C17 |
C16 |
180.0 |
180.0 |
C1 |
N |
C2 |
C3 |
179.9 |
180.0 |
C1 |
N |
C2 |
H12 |
360.0 |
0.1 |
C1 |
N |
C17 |
O3 |
360.0 |
0.0 |
O3 |
C17 |
N |
C2 |
179.8 |
180.2 |
N |
C17 |
O3 |
C16 |
180.0 |
180.0 |
C1 |
N |
C17 |
C2 |
180.1 |
179.9 |
O3 |
C17 |
N |
C16 |
180.0 |
180.0 |
C17 |
N |
C2 |
C3 |
0.1 |
359.9 |
C17 |
N |
C2 |
H12 |
180.1 |
180.0 |
C1 |
N |
C2 |
C17 |
179.9 |
180.1 |
C2 |
N |
C17 |
C16 |
359.9 |
0.1 |
C3 |
C2 |
N |
H12 |
180.0 |
179.9 |
N |
C2 |
C3 |
H13 |
180.1 |
179.9 |
O3 |
C17 |
C16 |
N |
180.0 |
180.0 |
C16 |
C17 |
N |
C2 |
359.9 |
0.1 |
N |
C2 |
C3 |
H12 |
180.0 |
180.1 |
C3 |
C4 |
C5 |
H1 |
360.0 |
0.3 |
O3 |
C17 |
C16 |
N4 |
0.1 |
0.0 |
O3 |
C17 |
C16 |
C4 |
180.1 |
180.0 |
C16 |
C4 |
C5 |
H1 |
180.0 |
180.0 |
N4 |
C7 |
C6 |
H2 |
179.5 |
179.9 |
C6 |
C5 |
C4 |
H1 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
H2 |
180.2 |
180.0 |
C8 |
C7 |
C6 |
H2 |
0.2 |
360.0 |
C7 |
C8 |
C9 |
H3 |
360.0 |
359.8 |
C7 |
C6 |
C5 |
H1 |
180.2 |
180.0 |
C5 |
C6 |
C7 |
H2 |
180.0 |
180.0 |
N3 |
C8 |
C9 |
H3 |
180.2 |
180.0 |
C4 |
C5 |
C6 |
H1 |
180.0 |
180.0 |
C7 |
C6 |
C5 |
H2 |
180.0 |
180.0 |
C8 |
C9 |
N1 |
C10 |
181.0 |
180.0 |
C9 |
N1 |
N2 |
C10 |
181.1 |
180.2 |
N2 |
N1 |
C10 |
C15 |
329.3 |
0.0 |
N2 |
N1 |
C10 |
C11 |
149.8 |
180.2 |
N2 |
N1 |
C9 |
C10 |
178.8 |
179.8 |
C9 |
N1 |
C10 |
C15 |
148.0 |
179.8 |
C9 |
N1 |
C10 |
C11 |
328.5 |
360.0 |
C11 |
C10 |
N1 |
C15 |
180.5 |
180.2 |
N1 |
C10 |
C15 |
C14 |
180.1 |
179.8 |
N1 |
C10 |
C15 |
H6 |
0.1 |
360.0 |
N1 |
C10 |
C11 |
C12 |
179.7 |
179.9 |
N1 |
C10 |
C11 |
H4 |
359.8 |
0.0 |
N1 |
C10 |
C15 |
C11 |
180.5 |
180.2 |
C15 |
C10 |
C11 |
C12 |
0.3 |
0.2 |
C15 |
C10 |
C11 |
H4 |
180.3 |
180.3 |
C10 |
C15 |
C14 |
F |
179.7 |
180.3 |
N1 |
C10 |
C11 |
C15 |
179.5 |
179.8 |
C11 |
C10 |
C15 |
C14 |
359.6 |
359.5 |
C11 |
C10 |
C15 |
H6 |
179.6 |
179.7 |
C10 |
C11 |
C12 |
C13 |
359.8 |
0.1 |
C12 |
C11 |
C10 |
H4 |
180.0 |
179.9 |
C10 |
C11 |
C12 |
H5 |
179.8 |
180.0 |
C10 |
C15 |
C14 |
H6 |
180.0 |
180.2 |
C15 |
C14 |
C13 |
O4 |
179.9 |
179.7 |
C12 |
C11 |
C10 |
C15 |
0.3 |
0.2 |
C10 |
C11 |
C12 |
H4 |
180.0 |
180.1 |
C11 |
C12 |
C13 |
O4 |
179.9 |
180.0 |
C13 |
C12 |
C11 |
H5 |
180.0 |
180.1 |
F |
C14 |
C13 |
O4 |
0.7 |
360.0 |
C10 |
C15 |
C14 |
C13 |
0.5 |
0.5 |
C12 |
C13 |
C14 |
O4 |
179.7 |
180.0 |
C14 |
C13 |
C12 |
H5 |
180.2 |
180.1 |
C14 |
C13 |
O4 |
H14 |
180.0 |
270.0 |
C13 |
C12 |
C11 |
H4 |
179.8 |
180.0 |
C11 |
C12 |
C13 |
H5 |
180.0 |
179.9 |
C14 |
C13 |
C12 |
O4 |
180.3 |
180.0 |
C12 |
C13 |
O4 |
H14 |
0.3 |
90.0 |
O4 |
C13 |
C12 |
H5 |
359.9 |
0.1 |
C4 |
C5 |
H1 |
C6 |
180.0 |
180.0 |
H1 |
C5 |
C6 |
H2 |
0.2 |
0.0 |
H2 |
C6 |
C5 |
H1 |
0.2 |
0.0 |
H3 |
C9 |
N1 |
C10 |
1.0 |
0.1 |
H4 |
C11 |
C10 |
C15 |
180.3 |
180.3 |
C10 |
C11 |
H4 |
C12 |
180.0 |
179.9 |
H4 |
C11 |
C12 |
C13 |
179.8 |
180.0 |
H4 |
C11 |
C12 |
H5 |
359.8 |
359.9 |
C11 |
C12 |
H5 |
C13 |
180.0 |
180.1 |
H5 |
C12 |
C11 |
H4 |
359.8 |
359.9 |
H5 |
C12 |
C13 |
O4 |
359.9 |
0.1 |
C10 |
C15 |
H6 |
C14 |
180.0 |
179.8 |
H6 |
C15 |
C14 |
F |
359.7 |
0.0 |
C |
C1 |
H10 |
H11 |
118.6 |
240.0 |
H10 |
C1 |
C |
O1 |
|
60.0 |
H10 |
C1 |
C |
O2 |
|
240.1 |
H10 |
C1 |
N |
C17 |
154.7 |
210.0 |
H10 |
C1 |
N |
C2 |
334.8 |
29.8 |
C |
C1 |
H11 |
H10 |
241.4 |
120.0 |
H11 |
C1 |
C |
O1 |
|
300.0 |
H11 |
C1 |
C |
O2 |
|
120.1 |
H11 |
C1 |
N |
C17 |
35.6 |
330.0 |
H11 |
C1 |
N |
C2 |
215.7 |
149.8 |
N |
C2 |
H12 |
C3 |
180.0 |
179.9 |
H12 |
C2 |
C3 |
H13 |
0.0 |
359.8 |
H13 |
C3 |
C2 |
H12 |
0.0 |
359.8 |
O1 |
C |
C1 |
H10 |
|
60.0 |
O1 |
C |
C1 |
H11 |
|
300.0 |
C1 |
C |
O1 |
O2 |
|
180.1 |
O2 |
C |
C1 |
H10 |
|
240.1 |
O2 |
C |
C1 |
H11 |
|
120.1 |
C1 |
C |
O2 |
O1 |
|
179.9 |
O2 |
C |
O1 |
H7 |
|
359.9 |
H7 |
O1 |
C |
O2 |
|
359.9 |