PDB Chemical Component C9Y

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C9Y

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C C1 1.513 1.507
C1 N 1.467 1.465
O3 C17 1.220 1.218
N C17 1.399 1.347
N C2 1.375 1.365
C17 C16 1.484 1.470
C2 C3 1.334 1.344
C3 C4 1.436 1.462
C16 N4 1.351 1.327
C16 C4 1.414 1.412
N4 C7 1.348 1.322
C4 C5 1.401 1.402
C7 C8 1.477 1.483
C7 C6 1.392 1.402
N3 C8 1.366 1.341
N3 N2 1.314 1.287
C5 C6 1.383 1.367
C8 C9 1.373 1.363
N2 N1 1.357 1.402
C9 N1 1.354 1.354
N1 C10 1.437 1.404
C10 C15 1.394 1.388
C10 C11 1.396 1.388
C15 C14 1.370 1.383
C11 C12 1.390 1.380
C14 F 1.352 1.352
C14 C13 1.404 1.389
C12 C13 1.401 1.387
C13 O4 1.355 1.360
C5 H1 1.080 1.080
C6 H2 1.080 1.080
C9 H3 1.080 1.080
C11 H4 1.080 1.080
C12 H5 1.080 1.080
C15 H6 1.080 1.080
C1 H10 1.100 1.090
C1 H11 1.100 1.090
C2 H12 1.080 1.080
C3 H13 1.080 1.080
O4 H14 0.950 0.967
C O1   1.343
C O2   1.208
O1 H7   0.967

Bond Angles for C9Y

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C C1 H10 108.7 109.5
C C1 H11 108.7 109.5
C1 C O1   120.0
C1 C O2   120.0
C1 N C17 118.4 118.9
C1 N C2 119.0 118.8
O3 C17 N 120.4 120.3
O3 C17 C16 124.6 120.4
C17 N C2 122.6 122.3
N C17 C16 115.0 119.3
N C2 C3 122.9 122.3
N C2 H12 118.5 118.9
C3 C2 H12 118.5 118.8
C2 C3 H13 119.8 120.3
C4 C5 C6 120.9 118.1
C4 C5 H1 119.5 120.9
C7 C8 C9 129.7 125.7
C7 C6 H2 120.9 120.1
C6 C5 H1 119.6 120.9
C5 C6 H2 121.0 120.2
C8 C9 H3 127.1 126.6
N2 N1 C10 120.0 126.7
C9 N1 C10 130.0 126.6
N1 C10 C15 118.1 120.0
N1 C10 C11 121.9 120.0
C11 C10 C15 119.9 120.0
C10 C15 C14 118.8 119.9
C10 C15 H6 120.6 120.1
C10 C11 C12 120.2 120.0
C10 C11 H4 119.9 120.0
C15 C14 F 119.6 120.0
C11 C12 C13 120.9 120.1
C12 C11 H4 119.9 120.0
C11 C12 H5 119.6 120.0
C14 C13 O4 122.6 120.1
C12 C13 O4 120.5 120.0
C13 C12 H5 119.5 120.0
C13 O4 H14 109.5 114.0
H10 C1 H11 109.5 109.5
O1 C O2   120.0
C O1 H7   117.0

Torsion Angles for C9Y

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C C1 N C17 275.2 90.0
C C1 N C2 95.3 269.8
H10 C1 C H11 240.9 120.0
O1 C C1 O2   179.9
C1 C O1 H7   180.0
O3 C17 N C1 360.0 0.0
C17 N C1 C2 179.9 180.1
C1 N C17 C16 180.0 180.0
C1 N C2 C3 179.9 180.0
C1 N C2 H12 360.0 0.1
C1 N C17 O3 360.0 0.0
O3 C17 N C2 179.8 180.2
N C17 O3 C16 180.0 180.0
C1 N C17 C2 180.1 179.9
O3 C17 N C16 180.0 180.0
C17 N C2 C3 0.1 359.9
C17 N C2 H12 180.1 180.0
C1 N C2 C17 179.9 180.1
C2 N C17 C16 359.9 0.1
C3 C2 N H12 180.0 179.9
N C2 C3 H13 180.1 179.9
O3 C17 C16 N 180.0 180.0
C16 C17 N C2 359.9 0.1
N C2 C3 H12 180.0 180.1
C3 C4 C5 H1 360.0 0.3
O3 C17 C16 N4 0.1 0.0
O3 C17 C16 C4 180.1 180.0
C16 C4 C5 H1 180.0 180.0
N4 C7 C6 H2 179.5 179.9
C6 C5 C4 H1 180.0 180.0
C4 C5 C6 H2 180.2 180.0
C8 C7 C6 H2 0.2 360.0
C7 C8 C9 H3 360.0 359.8
C7 C6 C5 H1 180.2 180.0
C5 C6 C7 H2 180.0 180.0
N3 C8 C9 H3 180.2 180.0
C4 C5 C6 H1 180.0 180.0
C7 C6 C5 H2 180.0 180.0
C8 C9 N1 C10 181.0 180.0
C9 N1 N2 C10 181.1 180.2
N2 N1 C10 C15 329.3 0.0
N2 N1 C10 C11 149.8 180.2
N2 N1 C9 C10 178.8 179.8
C9 N1 C10 C15 148.0 179.8
C9 N1 C10 C11 328.5 360.0
C11 C10 N1 C15 180.5 180.2
N1 C10 C15 C14 180.1 179.8
N1 C10 C15 H6 0.1 360.0
N1 C10 C11 C12 179.7 179.9
N1 C10 C11 H4 359.8 0.0
N1 C10 C15 C11 180.5 180.2
C15 C10 C11 C12 0.3 0.2
C15 C10 C11 H4 180.3 180.3
C10 C15 C14 F 179.7 180.3
N1 C10 C11 C15 179.5 179.8
C11 C10 C15 C14 359.6 359.5
C11 C10 C15 H6 179.6 179.7
C10 C11 C12 C13 359.8 0.1
C12 C11 C10 H4 180.0 179.9
C10 C11 C12 H5 179.8 180.0
C10 C15 C14 H6 180.0 180.2
C15 C14 C13 O4 179.9 179.7
C12 C11 C10 C15 0.3 0.2
C10 C11 C12 H4 180.0 180.1
C11 C12 C13 O4 179.9 180.0
C13 C12 C11 H5 180.0 180.1
F C14 C13 O4 0.7 360.0
C10 C15 C14 C13 0.5 0.5
C12 C13 C14 O4 179.7 180.0
C14 C13 C12 H5 180.2 180.1
C14 C13 O4 H14 180.0 270.0
C13 C12 C11 H4 179.8 180.0
C11 C12 C13 H5 180.0 179.9
C14 C13 C12 O4 180.3 180.0
C12 C13 O4 H14 0.3 90.0
O4 C13 C12 H5 359.9 0.1
C4 C5 H1 C6 180.0 180.0
H1 C5 C6 H2 0.2 0.0
H2 C6 C5 H1 0.2 0.0
H3 C9 N1 C10 1.0 0.1
H4 C11 C10 C15 180.3 180.3
C10 C11 H4 C12 180.0 179.9
H4 C11 C12 C13 179.8 180.0
H4 C11 C12 H5 359.8 359.9
C11 C12 H5 C13 180.0 180.1
H5 C12 C11 H4 359.8 359.9
H5 C12 C13 O4 359.9 0.1
C10 C15 H6 C14 180.0 179.8
H6 C15 C14 F 359.7 0.0
C C1 H10 H11 118.6 240.0
H10 C1 C O1   60.0
H10 C1 C O2   240.1
H10 C1 N C17 154.7 210.0
H10 C1 N C2 334.8 29.8
C C1 H11 H10 241.4 120.0
H11 C1 C O1   300.0
H11 C1 C O2   120.1
H11 C1 N C17 35.6 330.0
H11 C1 N C2 215.7 149.8
N C2 H12 C3 180.0 179.9
H12 C2 C3 H13 0.0 359.8
H13 C3 C2 H12 0.0 359.8
O1 C C1 H10   60.0
O1 C C1 H11   300.0
C1 C O1 O2   180.1
O2 C C1 H10   240.1
O2 C C1 H11   120.1
C1 C O2 O1   179.9
O2 C O1 H7   359.9
H7 O1 C O2   359.9