PDB Chemical Component C9N
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for C9N
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
C1 |
1.475 |
1.469 |
C1B |
C1 |
1.487 |
1.529 |
C1 |
C2 |
1.543 |
1.530 |
C2 |
N2 |
1.456 |
1.469 |
CN |
N2 |
1.296 |
1.469 |
N2 |
C3 |
1.440 |
1.469 |
C3 |
C4 |
1.544 |
1.530 |
C4 |
O |
1.536 |
1.430 |
C1 |
H1 |
1.100 |
1.091 |
C2 |
H2 |
1.100 |
1.090 |
C2 |
H3 |
1.100 |
1.089 |
C3 |
H31 |
1.100 |
1.090 |
C3 |
H32 |
1.099 |
1.090 |
N |
H5 |
1.000 |
1.009 |
N |
H6 |
1.000 |
1.008 |
C1B |
HB3 |
1.101 |
1.090 |
C1B |
HB2 |
1.100 |
1.090 |
C1B |
HB1 |
1.101 |
1.090 |
CN |
HN2 |
1.100 |
1.090 |
CN |
HN1 |
1.100 |
1.090 |
CN |
HN3 |
1.100 |
1.090 |
O |
H |
0.950 |
0.967 |
C4 |
H42 |
1.100 |
1.089 |
C4 |
H4 |
1.100 |
1.090 |
Bond Angles for C9N
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N |
C1 |
H1 |
109.2 |
109.4 |
C1B |
C1 |
H1 |
109.1 |
109.5 |
C1 |
C2 |
N2 |
114.0 |
109.5 |
C2 |
C1 |
H1 |
108.4 |
109.5 |
C1 |
C2 |
H2 |
108.3 |
109.4 |
C1 |
C2 |
H3 |
108.3 |
109.5 |
C2 |
N2 |
C3 |
103.1 |
111.0 |
N2 |
C2 |
H2 |
108.3 |
109.5 |
N2 |
C2 |
H3 |
108.3 |
109.5 |
N2 |
C3 |
H31 |
107.9 |
109.5 |
N2 |
C3 |
H32 |
107.9 |
109.4 |
C3 |
C4 |
O |
114.1 |
109.5 |
C4 |
C3 |
H31 |
108.0 |
109.4 |
C4 |
C3 |
H32 |
108.0 |
109.5 |
C3 |
C4 |
H42 |
108.3 |
109.5 |
C3 |
C4 |
H4 |
108.3 |
109.5 |
C4 |
O |
H |
109.5 |
114.0 |
O |
C4 |
H42 |
108.3 |
109.5 |
O |
C4 |
H4 |
108.3 |
109.5 |
H2 |
C2 |
H3 |
109.5 |
109.5 |
H31 |
C3 |
H32 |
109.5 |
109.5 |
H5 |
N |
H6 |
109.4 |
111.0 |
HB3 |
C1B |
HB2 |
109.4 |
109.4 |
HB3 |
C1B |
HB1 |
109.4 |
109.5 |
HB2 |
C1B |
HB1 |
109.5 |
109.4 |
HN2 |
CN |
HN1 |
109.4 |
109.5 |
HN2 |
CN |
HN3 |
109.5 |
109.5 |
HN1 |
CN |
HN3 |
109.5 |
109.5 |
H42 |
C4 |
H4 |
109.5 |
109.5 |
Torsion Angles for C9N
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C1B |
C1 |
N |
H1 |
120.7 |
120.0 |
C2 |
C1 |
N |
H1 |
242.7 |
240.0 |
N |
C1 |
C2 |
H2 |
181.1 |
175.0 |
N |
C1 |
C2 |
H3 |
299.8 |
295.0 |
N |
C1 |
C1B |
H1 |
239.3 |
240.1 |
C2 |
C1 |
C1B |
H1 |
119.4 |
120.0 |
C1B |
C1 |
C2 |
H2 |
303.5 |
295.0 |
C1B |
C1 |
C2 |
H3 |
62.1 |
55.0 |
N |
C1 |
C2 |
H1 |
117.8 |
120.0 |
C1B |
C1 |
C2 |
H1 |
240.2 |
240.0 |
C1 |
C2 |
N2 |
C3 |
184.1 |
190.0 |
N2 |
C2 |
C1 |
H2 |
239.3 |
240.0 |
N2 |
C2 |
C1 |
H3 |
120.7 |
120.0 |
H2 |
C2 |
C1 |
H3 |
241.4 |
240.0 |
N2 |
C2 |
C1 |
H1 |
302.6 |
295.0 |
C1 |
C2 |
N2 |
H2 |
120.7 |
120.0 |
C1 |
C2 |
N2 |
H3 |
239.3 |
240.0 |
C2 |
N2 |
C3 |
H31 |
278.9 |
316.4 |
C2 |
N2 |
C3 |
H32 |
37.1 |
196.4 |
H2 |
C2 |
N2 |
H3 |
118.6 |
120.0 |
CN |
N2 |
C2 |
H2 |
289.2 |
306.1 |
CN |
N2 |
C2 |
H3 |
170.5 |
186.1 |
CN |
N2 |
C3 |
H31 |
67.8 |
80.4 |
CN |
N2 |
C3 |
H32 |
186.1 |
320.3 |
C3 |
N2 |
C2 |
H2 |
63.4 |
70.0 |
C3 |
N2 |
C2 |
H3 |
304.8 |
310.0 |
N2 |
C3 |
C4 |
O |
94.5 |
65.0 |
C4 |
C3 |
N2 |
H31 |
239.1 |
120.0 |
C4 |
C3 |
N2 |
H32 |
120.9 |
240.0 |
N2 |
C3 |
C4 |
H42 |
215.2 |
185.0 |
N2 |
C3 |
C4 |
H4 |
333.8 |
305.0 |
H31 |
C3 |
N2 |
H32 |
241.8 |
120.0 |
C2 |
N2 |
C3 |
C4 |
158.0 |
76.4 |
N2 |
C3 |
C4 |
H31 |
120.9 |
240.0 |
N2 |
C3 |
C4 |
H32 |
239.1 |
120.0 |
C3 |
C4 |
O |
H |
180.0 |
180.0 |
O |
C4 |
C3 |
H42 |
239.3 |
240.0 |
O |
C4 |
C3 |
H4 |
120.7 |
120.0 |
H31 |
C3 |
C4 |
H32 |
118.3 |
239.9 |
H42 |
C4 |
C3 |
H4 |
241.4 |
240.0 |
O |
C4 |
C3 |
H31 |
333.7 |
185.0 |
O |
C4 |
C3 |
H32 |
215.4 |
305.0 |
C3 |
C4 |
O |
H42 |
120.7 |
120.0 |
C3 |
C4 |
O |
H4 |
239.3 |
240.0 |
H42 |
C4 |
O |
H4 |
118.6 |
120.0 |
H1 |
C1 |
C2 |
N2 |
302.6 |
295.0 |
H1 |
C1 |
C2 |
H2 |
63.3 |
55.0 |
H1 |
C1 |
C2 |
H3 |
181.9 |
175.0 |
C1 |
C2 |
H2 |
N2 |
235.8 |
240.0 |
H2 |
C2 |
C1 |
H1 |
63.3 |
55.0 |
C1 |
C2 |
H2 |
H3 |
117.9 |
120.0 |
H2 |
C2 |
N2 |
C3 |
63.4 |
70.0 |
N2 |
C2 |
H2 |
H3 |
242.1 |
240.0 |
C1 |
C2 |
H3 |
N2 |
124.2 |
120.0 |
H3 |
C2 |
C1 |
H1 |
181.9 |
175.0 |
C1 |
C2 |
H3 |
H2 |
242.1 |
240.0 |
H3 |
C2 |
N2 |
C3 |
304.8 |
310.0 |
N2 |
C2 |
H3 |
H2 |
117.9 |
120.0 |
N2 |
C3 |
H31 |
H32 |
117.3 |
240.0 |
H31 |
C3 |
C4 |
O |
333.7 |
185.0 |
C4 |
C3 |
H31 |
H32 |
242.7 |
120.0 |
H31 |
C3 |
C4 |
H42 |
94.4 |
305.0 |
H31 |
C3 |
C4 |
H4 |
213.0 |
65.0 |
N2 |
C3 |
H32 |
H31 |
242.7 |
120.0 |
H32 |
C3 |
C4 |
O |
215.4 |
305.0 |
C4 |
C3 |
H32 |
H31 |
117.3 |
240.0 |
H32 |
C3 |
C4 |
H42 |
336.1 |
65.1 |
H32 |
C3 |
C4 |
H4 |
94.7 |
185.1 |
H5 |
N |
C1 |
H1 |
59.4 |
180.0 |
H6 |
N |
C1 |
H1 |
179.3 |
304.0 |
HB3 |
C1B |
C1 |
H1 |
300.7 |
300.0 |
HB2 |
C1B |
HB3 |
HB1 |
120.0 |
119.9 |
HB2 |
C1B |
C1 |
H1 |
60.7 |
60.0 |
HB3 |
C1B |
HB2 |
HB1 |
240.0 |
240.0 |
HB1 |
C1B |
C1 |
H1 |
180.7 |
179.9 |
HB3 |
C1B |
HB1 |
HB2 |
120.0 |
119.9 |
HN1 |
CN |
HN2 |
HN3 |
120.0 |
120.1 |
HN2 |
CN |
HN1 |
HN3 |
240.0 |
239.9 |
HN2 |
CN |
HN3 |
HN1 |
120.0 |
120.0 |
H |
O |
C4 |
H42 |
59.3 |
60.0 |
H |
O |
C4 |
H4 |
300.7 |
300.0 |
C3 |
C4 |
H42 |
O |
235.8 |
240.0 |
H42 |
C4 |
C3 |
H31 |
94.4 |
305.0 |
H42 |
C4 |
C3 |
H32 |
336.1 |
65.1 |
C3 |
C4 |
H42 |
H4 |
117.9 |
120.0 |
H42 |
C4 |
O |
H |
59.3 |
60.0 |
O |
C4 |
H42 |
H4 |
242.1 |
240.0 |
C3 |
C4 |
H4 |
O |
124.2 |
120.0 |
H4 |
C4 |
C3 |
H31 |
213.0 |
65.0 |
H4 |
C4 |
C3 |
H32 |
94.7 |
185.1 |
C3 |
C4 |
H4 |
H42 |
242.1 |
240.0 |
H4 |
C4 |
O |
H |
300.7 |
300.0 |
O |
C4 |
H4 |
H42 |
117.9 |
120.0 |