PDB Chemical Component C9J
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for C9J
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
F |
C13 |
1.354 |
1.351 |
O |
C12 |
1.356 |
1.360 |
C13 |
C12 |
1.400 |
1.390 |
C13 |
C14 |
1.361 |
1.382 |
C12 |
C11 |
1.388 |
1.386 |
C14 |
C9 |
1.388 |
1.388 |
C11 |
C10 |
1.384 |
1.381 |
C9 |
C10 |
1.389 |
1.388 |
C9 |
N1 |
1.425 |
1.403 |
N2 |
N1 |
1.354 |
1.402 |
N2 |
N3 |
1.308 |
1.288 |
N1 |
C8 |
1.343 |
1.355 |
N3 |
C7 |
1.364 |
1.341 |
C8 |
C7 |
1.368 |
1.362 |
C7 |
C6 |
1.463 |
1.484 |
C6 |
N4 |
1.340 |
1.322 |
C6 |
C5 |
1.388 |
1.402 |
N4 |
C15 |
1.351 |
1.327 |
O1 |
C16 |
1.226 |
1.218 |
C5 |
C4 |
1.383 |
1.367 |
C15 |
C16 |
1.481 |
1.471 |
C15 |
C3 |
1.417 |
1.411 |
C16 |
N |
1.409 |
1.347 |
C4 |
C3 |
1.406 |
1.402 |
C3 |
C2 |
1.439 |
1.462 |
N |
C |
1.465 |
1.465 |
N |
C1 |
1.381 |
1.364 |
C2 |
C1 |
1.337 |
1.345 |
C4 |
H1 |
1.080 |
1.080 |
C5 |
H2 |
1.080 |
1.081 |
C8 |
H3 |
1.080 |
1.079 |
C10 |
H4 |
1.080 |
1.080 |
C11 |
H5 |
1.080 |
1.081 |
C14 |
H6 |
1.080 |
1.080 |
C |
H7 |
1.100 |
1.090 |
C |
H8 |
1.100 |
1.090 |
C |
H9 |
1.099 |
1.090 |
O |
H10 |
0.950 |
0.967 |
C1 |
H11 |
1.080 |
1.079 |
C2 |
H12 |
1.080 |
1.080 |
Bond Angles for C9J
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C13 |
C14 |
H6 |
121.2 |
120.0 |
C12 |
C11 |
H5 |
119.8 |
120.0 |
C11 |
C10 |
H4 |
119.8 |
120.0 |
C9 |
C10 |
H4 |
119.7 |
119.9 |
N1 |
C8 |
C7 |
104.6 |
106.7 |
N1 |
C8 |
H3 |
127.7 |
126.6 |
C7 |
C6 |
N4 |
113.7 |
119.3 |
C6 |
N4 |
C15 |
118.6 |
121.1 |
C6 |
C5 |
H2 |
121.2 |
120.2 |
N4 |
C15 |
C16 |
116.2 |
121.7 |
N4 |
C15 |
C3 |
122.3 |
120.3 |
C5 |
C4 |
C3 |
120.9 |
118.1 |
C5 |
C4 |
H1 |
119.5 |
121.0 |
C16 |
C15 |
C3 |
121.5 |
118.0 |
C15 |
C16 |
N |
114.6 |
119.3 |
C4 |
C3 |
C15 |
116.8 |
119.4 |
C15 |
C3 |
C2 |
118.1 |
118.7 |
C4 |
C3 |
C2 |
125.0 |
122.0 |
C3 |
C4 |
H1 |
119.5 |
120.9 |
C3 |
C2 |
H12 |
119.9 |
120.3 |
C |
N |
C1 |
120.2 |
118.8 |
N |
C |
H7 |
109.5 |
109.5 |
N |
C |
H8 |
109.5 |
109.5 |
N |
C |
H9 |
109.5 |
109.5 |
N |
C1 |
H11 |
118.5 |
118.9 |
C2 |
C1 |
H11 |
118.5 |
118.8 |
H7 |
C |
H8 |
109.4 |
109.4 |
H7 |
C |
H9 |
109.5 |
109.5 |
H8 |
C |
H9 |
109.5 |
109.4 |
Torsion Angles for C9J
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
F |
C13 |
C14 |
H6 |
359.6 |
359.8 |
O |
C12 |
C11 |
H5 |
0.8 |
0.1 |
C13 |
C12 |
C11 |
H5 |
180.6 |
180.0 |
C12 |
C11 |
C10 |
H4 |
179.8 |
180.1 |
C14 |
C9 |
C10 |
H4 |
179.5 |
180.2 |
C9 |
C10 |
C11 |
H4 |
180.0 |
180.0 |
C11 |
C10 |
C9 |
H4 |
180.0 |
180.0 |
C9 |
N1 |
C8 |
H3 |
1.1 |
359.7 |
N2 |
N1 |
C8 |
H3 |
181.9 |
180.0 |
N3 |
C7 |
C6 |
N4 |
349.8 |
180.0 |
N1 |
C8 |
C7 |
H3 |
180.0 |
180.0 |
C8 |
C7 |
C6 |
N4 |
162.5 |
0.1 |
C7 |
C6 |
N4 |
C15 |
182.8 |
180.0 |
C7 |
C6 |
C5 |
H2 |
357.0 |
0.0 |
N4 |
C6 |
C5 |
H2 |
181.1 |
179.9 |
C6 |
N4 |
C15 |
C16 |
180.4 |
179.9 |
C6 |
N4 |
C15 |
C3 |
0.5 |
360.0 |
C6 |
C5 |
C4 |
C3 |
359.1 |
360.0 |
C6 |
C5 |
C4 |
H1 |
179.1 |
179.7 |
C16 |
C15 |
N4 |
C3 |
179.8 |
179.9 |
N4 |
C15 |
C16 |
N |
180.3 |
180.0 |
C4 |
C3 |
C15 |
N4 |
359.7 |
359.9 |
N4 |
C15 |
C3 |
C2 |
179.7 |
180.3 |
C5 |
C4 |
C3 |
C15 |
0.5 |
0.1 |
C5 |
C4 |
C3 |
C2 |
180.4 |
179.7 |
C3 |
C4 |
C5 |
H1 |
180.0 |
180.2 |
N4 |
C15 |
C16 |
C3 |
180.2 |
180.1 |
C4 |
C3 |
C15 |
C16 |
179.9 |
180.0 |
C16 |
C15 |
C3 |
C2 |
359.9 |
0.4 |
N4 |
C15 |
C3 |
C16 |
179.8 |
180.0 |
C3 |
C15 |
C16 |
N |
0.1 |
359.9 |
C4 |
C3 |
C15 |
C2 |
180.0 |
179.6 |
C15 |
C3 |
C4 |
H1 |
180.5 |
180.3 |
C15 |
C3 |
C2 |
H12 |
180.1 |
179.8 |
N |
C16 |
C15 |
C3 |
0.1 |
359.9 |
C16 |
N |
C |
H7 |
180.0 |
179.8 |
C16 |
N |
C |
H8 |
300.0 |
299.8 |
C16 |
N |
C |
H9 |
60.0 |
59.8 |
C16 |
N |
C1 |
H11 |
180.1 |
180.3 |
N4 |
C15 |
C3 |
C4 |
359.7 |
359.9 |
C5 |
C4 |
C3 |
H1 |
180.0 |
179.8 |
C16 |
C15 |
C3 |
C4 |
179.9 |
180.0 |
C15 |
C3 |
C4 |
C2 |
180.0 |
180.4 |
C4 |
C3 |
C2 |
H12 |
0.1 |
0.1 |
C4 |
C3 |
C2 |
C15 |
180.0 |
180.4 |
C2 |
C3 |
C4 |
H1 |
0.4 |
359.9 |
C3 |
C2 |
C1 |
H11 |
179.9 |
180.0 |
C15 |
C16 |
N |
C |
180.0 |
180.0 |
C |
N |
C1 |
H11 |
0.1 |
0.0 |
H7 |
C |
N |
H8 |
240.0 |
240.0 |
H7 |
C |
N |
H9 |
120.0 |
120.0 |
H8 |
C |
N |
H9 |
240.0 |
240.0 |
C15 |
C16 |
N |
C1 |
359.9 |
359.8 |
C1 |
N |
C |
H7 |
0.0 |
360.0 |
C1 |
N |
C |
H8 |
120.0 |
120.0 |
C1 |
N |
C |
H9 |
240.0 |
240.0 |
C2 |
C1 |
N |
H11 |
180.0 |
180.0 |
C15 |
C3 |
C2 |
C1 |
0.1 |
359.6 |
C4 |
C3 |
C2 |
C1 |
180.1 |
180.0 |
N |
C1 |
C2 |
H11 |
180.0 |
180.0 |
C5 |
C4 |
H1 |
C3 |
180.0 |
180.2 |
H1 |
C4 |
C3 |
C15 |
180.5 |
180.3 |
H1 |
C4 |
C3 |
C2 |
0.4 |
359.9 |
H2 |
C5 |
C4 |
C3 |
179.2 |
180.0 |
H2 |
C5 |
C4 |
H1 |
359.2 |
359.8 |
N1 |
C8 |
H3 |
C7 |
180.0 |
180.0 |
H5 |
C11 |
C10 |
H4 |
359.9 |
0.0 |
H7 |
C |
N |
C1 |
0.0 |
360.0 |
N |
C |
H7 |
H8 |
120.0 |
120.0 |
N |
C |
H7 |
H9 |
240.0 |
240.0 |
H8 |
C |
H7 |
H9 |
120.0 |
119.9 |
H8 |
C |
N |
C1 |
120.0 |
120.0 |
N |
C |
H8 |
H7 |
240.0 |
240.0 |
N |
C |
H8 |
H9 |
120.0 |
120.0 |
H7 |
C |
H8 |
H9 |
240.0 |
240.0 |
H9 |
C |
N |
C1 |
240.0 |
240.0 |
N |
C |
H9 |
H7 |
120.0 |
120.0 |
N |
C |
H9 |
H8 |
240.0 |
240.0 |
H7 |
C |
H9 |
H8 |
120.0 |
119.9 |
H12 |
C2 |
C1 |
H11 |
359.9 |
359.9 |