PDB Chemical Component C9F
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for C9F
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C20 |
C18 |
1.539 |
1.507 |
| C18 |
O19 |
1.225 |
1.208 |
| C18 |
O17 |
1.388 |
1.342 |
| O17 |
C16 |
1.389 |
1.453 |
| O01 |
C02 |
1.175 |
1.213 |
| C16 |
C02 |
1.561 |
1.500 |
| C16 |
C07 |
1.548 |
1.537 |
| C10 |
C09 |
1.384 |
1.381 |
| C10 |
C11 |
1.389 |
1.387 |
| O12 |
C11 |
1.452 |
1.360 |
| O12 |
C13 |
1.431 |
1.429 |
| C09 |
C08 |
1.388 |
1.383 |
| C11 |
C14 |
1.398 |
1.387 |
| C28 |
N27 |
1.426 |
1.468 |
| C02 |
N03 |
1.483 |
1.339 |
| N27 |
C29 |
1.449 |
1.469 |
| N27 |
C26 |
1.509 |
1.469 |
| C08 |
C07 |
1.577 |
1.508 |
| C08 |
C15 |
1.403 |
1.383 |
| C14 |
C15 |
1.382 |
1.381 |
| C07 |
S06 |
1.795 |
1.824 |
| N03 |
C25 |
1.487 |
1.465 |
| N03 |
C04 |
1.531 |
1.404 |
| C26 |
C25 |
1.523 |
1.530 |
| S06 |
C05 |
1.801 |
1.762 |
| C04 |
C05 |
1.392 |
1.393 |
| C04 |
C24 |
1.442 |
1.385 |
| C05 |
C21 |
1.394 |
1.386 |
| C24 |
C23 |
1.381 |
1.384 |
| C21 |
C22 |
1.426 |
1.383 |
| C23 |
C22 |
1.398 |
1.383 |
| C10 |
H1 |
1.080 |
1.080 |
| C13 |
H2 |
1.100 |
1.089 |
| C13 |
H3 |
1.100 |
1.090 |
| C13 |
H4 |
1.100 |
1.090 |
| C15 |
H5 |
1.080 |
1.080 |
| C20 |
H6 |
1.100 |
1.090 |
| C20 |
H7 |
1.100 |
1.090 |
| C20 |
H8 |
1.100 |
1.090 |
| C21 |
H9 |
1.080 |
1.080 |
| C22 |
H10 |
1.080 |
1.080 |
| C24 |
H11 |
1.079 |
1.080 |
| C26 |
H12 |
1.100 |
1.090 |
| C26 |
H13 |
1.100 |
1.090 |
| C28 |
H14 |
1.100 |
1.090 |
| C28 |
H15 |
1.100 |
1.091 |
| C28 |
H16 |
1.101 |
1.090 |
| C07 |
H17 |
1.100 |
1.090 |
| C09 |
H18 |
1.080 |
1.079 |
| C14 |
H19 |
1.080 |
1.080 |
| C16 |
H20 |
1.100 |
1.089 |
| C23 |
H21 |
1.080 |
1.079 |
| C25 |
H22 |
1.100 |
1.090 |
| C25 |
H23 |
1.100 |
1.090 |
| C29 |
H25 |
1.100 |
1.091 |
| C29 |
H26 |
1.100 |
1.090 |
| C29 |
H27 |
1.100 |
1.090 |
Bond Angles for C9F
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C20 |
C18 |
O19 |
119.9 |
120.0 |
| C20 |
C18 |
O17 |
120.1 |
120.0 |
| C18 |
C20 |
H6 |
109.5 |
109.5 |
| C18 |
C20 |
H7 |
109.5 |
109.5 |
| C18 |
C20 |
H8 |
109.4 |
109.5 |
| O17 |
C16 |
H20 |
108.6 |
109.2 |
| O01 |
C02 |
N03 |
117.5 |
119.5 |
| C16 |
C07 |
H17 |
108.8 |
109.9 |
| C09 |
C10 |
C11 |
119.7 |
119.9 |
| C10 |
C09 |
C08 |
120.4 |
120.0 |
| C09 |
C10 |
H1 |
120.1 |
120.0 |
| C10 |
C09 |
H18 |
119.8 |
120.0 |
| C10 |
C11 |
C14 |
120.2 |
119.9 |
| C11 |
C10 |
H1 |
120.1 |
120.0 |
| O12 |
C11 |
C14 |
120.6 |
120.0 |
| O12 |
C13 |
H2 |
109.5 |
109.5 |
| O12 |
C13 |
H3 |
109.5 |
109.5 |
| O12 |
C13 |
H4 |
109.5 |
109.4 |
| C11 |
C14 |
H19 |
120.0 |
120.0 |
| C28 |
N27 |
C29 |
109.2 |
111.0 |
| N27 |
C28 |
H14 |
109.5 |
109.5 |
| N27 |
C28 |
H15 |
109.5 |
109.5 |
| N27 |
C28 |
H16 |
109.5 |
109.5 |
| C02 |
N03 |
C25 |
113.2 |
120.0 |
| C02 |
N03 |
C04 |
137.0 |
119.9 |
| N27 |
C29 |
H25 |
109.5 |
109.4 |
| N27 |
C29 |
H26 |
109.5 |
109.5 |
| N27 |
C29 |
H27 |
109.5 |
109.5 |
| N27 |
C26 |
H12 |
109.2 |
109.4 |
| N27 |
C26 |
H13 |
109.2 |
109.5 |
| C08 |
C07 |
H17 |
108.5 |
109.8 |
| C08 |
C15 |
H5 |
120.2 |
120.0 |
| C14 |
C15 |
H5 |
120.2 |
120.0 |
| C04 |
N03 |
C25 |
109.8 |
120.0 |
| C26 |
C25 |
N03 |
110.4 |
109.5 |
| N03 |
C25 |
H22 |
109.3 |
109.5 |
| N03 |
C25 |
H23 |
109.2 |
109.5 |
| N03 |
C04 |
C05 |
125.8 |
119.5 |
| C25 |
C26 |
H12 |
109.2 |
109.5 |
| C25 |
C26 |
H13 |
109.2 |
109.5 |
| C26 |
C25 |
H22 |
109.2 |
109.5 |
| C26 |
C25 |
H23 |
109.2 |
109.4 |
| C04 |
C24 |
C23 |
121.4 |
119.7 |
| C04 |
C24 |
H11 |
119.3 |
120.1 |
| C05 |
C21 |
H9 |
119.6 |
120.2 |
| C23 |
C24 |
H11 |
119.3 |
120.1 |
| C24 |
C23 |
H21 |
120.2 |
119.8 |
| C22 |
C21 |
H9 |
119.7 |
120.1 |
| C21 |
C22 |
H10 |
120.3 |
119.9 |
| C23 |
C22 |
H10 |
120.3 |
119.8 |
| H2 |
C13 |
H3 |
109.5 |
109.6 |
| H2 |
C13 |
H4 |
109.4 |
109.5 |
| H3 |
C13 |
H4 |
109.5 |
109.4 |
| H6 |
C20 |
H7 |
109.5 |
109.4 |
| H6 |
C20 |
H8 |
109.4 |
109.5 |
| H7 |
C20 |
H8 |
109.5 |
109.5 |
| H12 |
C26 |
H13 |
109.5 |
109.4 |
| H14 |
C28 |
H15 |
109.5 |
109.4 |
| H14 |
C28 |
H16 |
109.5 |
109.5 |
| H15 |
C28 |
H16 |
109.4 |
109.5 |
| H22 |
C25 |
H23 |
109.5 |
109.5 |
| H25 |
C29 |
H26 |
109.5 |
109.5 |
| H25 |
C29 |
H27 |
109.5 |
109.5 |
| H26 |
C29 |
H27 |
109.5 |
109.5 |
Torsion Angles for C9F
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H6 |
C20 |
C18 |
H7 |
240.0 |
240.1 |
| H6 |
C20 |
C18 |
H8 |
120.0 |
120.0 |
| H7 |
C20 |
C18 |
H8 |
240.0 |
240.0 |
| C20 |
C18 |
O19 |
O17 |
180.3 |
179.9 |
| O19 |
C18 |
C20 |
H6 |
360.0 |
0.1 |
| O19 |
C18 |
C20 |
H7 |
120.0 |
120.0 |
| O19 |
C18 |
C20 |
H8 |
240.0 |
240.0 |
| C20 |
C18 |
O17 |
O19 |
179.7 |
180.1 |
| O17 |
C18 |
C20 |
H6 |
180.3 |
180.0 |
| O17 |
C18 |
C20 |
H7 |
300.3 |
299.9 |
| O17 |
C18 |
C20 |
H8 |
60.3 |
60.0 |
| C18 |
O17 |
C16 |
H20 |
337.7 |
330.5 |
| C20 |
C18 |
O17 |
C16 |
146.9 |
180.0 |
| O17 |
C16 |
C07 |
H17 |
63.9 |
78.2 |
| O01 |
C02 |
N03 |
C25 |
0.4 |
349.5 |
| O01 |
C02 |
N03 |
C04 |
179.9 |
169.5 |
| C16 |
C02 |
N03 |
C25 |
179.8 |
169.4 |
| C08 |
C07 |
C16 |
H17 |
240.8 |
239.0 |
| C09 |
C10 |
C11 |
C14 |
360.0 |
360.0 |
| C11 |
C10 |
C09 |
H1 |
180.0 |
180.3 |
| C11 |
C10 |
C09 |
C08 |
0.0 |
0.0 |
| C09 |
C10 |
C11 |
H1 |
180.0 |
179.7 |
| C11 |
C10 |
C09 |
H18 |
180.0 |
180.0 |
| O12 |
C11 |
C10 |
C14 |
180.1 |
180.1 |
| C10 |
C11 |
C14 |
H19 |
180.0 |
180.0 |
| C10 |
C11 |
O12 |
C14 |
179.9 |
179.9 |
| O12 |
C11 |
C10 |
H1 |
0.1 |
0.4 |
| C11 |
O12 |
C13 |
H2 |
180.0 |
299.9 |
| C11 |
O12 |
C13 |
H3 |
300.0 |
60.0 |
| C11 |
O12 |
C13 |
H4 |
60.0 |
179.9 |
| O12 |
C11 |
C14 |
H19 |
359.9 |
359.9 |
| H2 |
C13 |
O12 |
H3 |
239.9 |
239.9 |
| H2 |
C13 |
O12 |
H4 |
120.0 |
120.0 |
| H3 |
C13 |
O12 |
H4 |
240.0 |
240.1 |
| C08 |
C09 |
C10 |
C11 |
0.0 |
0.0 |
| C08 |
C09 |
C10 |
H1 |
180.0 |
179.7 |
| C10 |
C09 |
C08 |
H18 |
180.0 |
179.9 |
| C09 |
C08 |
C07 |
H17 |
17.2 |
348.3 |
| C09 |
C08 |
C15 |
H5 |
180.0 |
180.0 |
| C14 |
C11 |
C10 |
H1 |
180.0 |
180.3 |
| C11 |
C14 |
C15 |
H5 |
180.0 |
180.0 |
| C28 |
N27 |
C29 |
H25 |
180.0 |
63.9 |
| C28 |
N27 |
C29 |
H26 |
300.0 |
184.0 |
| C28 |
N27 |
C29 |
H27 |
60.0 |
304.0 |
| C28 |
N27 |
C26 |
H12 |
303.9 |
306.0 |
| C28 |
N27 |
C26 |
H13 |
63.6 |
186.1 |
| H14 |
C28 |
N27 |
H15 |
240.0 |
240.0 |
| H14 |
C28 |
N27 |
H16 |
120.0 |
120.0 |
| H15 |
C28 |
N27 |
H16 |
240.0 |
240.0 |
| C04 |
N03 |
C02 |
C25 |
179.5 |
180.0 |
| C26 |
C25 |
N03 |
C02 |
300.8 |
90.0 |
| C02 |
N03 |
C25 |
H22 |
60.9 |
330.0 |
| C02 |
N03 |
C25 |
H23 |
180.7 |
210.0 |
| C02 |
N03 |
C04 |
C05 |
19.7 |
309.6 |
| C29 |
N27 |
C28 |
H14 |
180.0 |
60.0 |
| C29 |
N27 |
C28 |
H15 |
300.0 |
180.0 |
| C29 |
N27 |
C28 |
H16 |
60.0 |
300.0 |
| C29 |
N27 |
C26 |
H12 |
184.2 |
70.0 |
| C29 |
N27 |
C26 |
H13 |
303.9 |
310.1 |
| H25 |
C29 |
N27 |
H26 |
240.0 |
240.0 |
| H25 |
C29 |
N27 |
H27 |
120.0 |
120.0 |
| H26 |
C29 |
N27 |
H27 |
240.0 |
240.0 |
| C25 |
C26 |
N27 |
H12 |
239.8 |
120.0 |
| C25 |
C26 |
N27 |
H13 |
120.2 |
239.9 |
| N27 |
C26 |
C25 |
H22 |
350.2 |
300.1 |
| N27 |
C26 |
C25 |
H23 |
230.5 |
60.1 |
| H12 |
C26 |
N27 |
H13 |
240.4 |
119.9 |
| C16 |
C07 |
C08 |
H17 |
119.4 |
121.0 |
| C10 |
C09 |
C08 |
C07 |
180.1 |
180.0 |
| C07 |
C08 |
C15 |
H5 |
359.9 |
0.0 |
| C10 |
C09 |
C08 |
C15 |
360.0 |
360.0 |
| C14 |
C15 |
C08 |
H5 |
180.0 |
180.0 |
| C10 |
C11 |
C14 |
C15 |
0.0 |
0.0 |
| C08 |
C15 |
C14 |
H5 |
180.0 |
180.0 |
| C02 |
N03 |
C25 |
C04 |
179.6 |
180.0 |
| C25 |
N03 |
C04 |
C05 |
199.2 |
129.6 |
| N03 |
C25 |
C26 |
H12 |
350.2 |
300.0 |
| N03 |
C25 |
C26 |
H13 |
230.5 |
60.0 |
| C26 |
C25 |
N03 |
H22 |
239.9 |
120.0 |
| C26 |
C25 |
N03 |
H23 |
120.1 |
240.0 |
| H22 |
C25 |
N03 |
H23 |
240.2 |
120.0 |
| C02 |
N03 |
C04 |
C25 |
180.5 |
180.0 |
| C26 |
C25 |
N03 |
C04 |
121.1 |
270.0 |
| C04 |
N03 |
C25 |
H22 |
241.3 |
150.0 |
| C04 |
N03 |
C25 |
H23 |
1.0 |
30.0 |
| N03 |
C04 |
C24 |
C23 |
180.3 |
180.6 |
| N03 |
C04 |
C24 |
H11 |
0.3 |
0.0 |
| C02 |
N03 |
C25 |
C26 |
300.8 |
90.0 |
| N27 |
C26 |
C25 |
H12 |
120.2 |
240.0 |
| N27 |
C26 |
C25 |
H13 |
239.8 |
120.1 |
| C04 |
N03 |
C25 |
C26 |
121.1 |
270.0 |
| N03 |
C25 |
C26 |
H22 |
120.2 |
239.9 |
| N03 |
C25 |
C26 |
H23 |
239.9 |
120.0 |
| H12 |
C26 |
C25 |
H13 |
119.7 |
240.0 |
| H22 |
C25 |
C26 |
H23 |
119.7 |
240.0 |
| S06 |
C05 |
C21 |
H9 |
0.1 |
1.1 |
| C05 |
C04 |
N03 |
C25 |
199.2 |
129.6 |
| C05 |
C04 |
C24 |
C23 |
359.2 |
1.1 |
| C05 |
C04 |
C24 |
H11 |
179.2 |
180.5 |
| C04 |
C05 |
C21 |
H9 |
179.6 |
180.7 |
| C23 |
C24 |
C04 |
H11 |
180.0 |
180.6 |
| C04 |
C24 |
C23 |
H21 |
180.4 |
180.1 |
| C22 |
C21 |
C05 |
H9 |
180.0 |
179.7 |
| C05 |
C21 |
C22 |
H10 |
180.0 |
180.3 |
| C04 |
C24 |
C23 |
H11 |
180.0 |
179.4 |
| C24 |
C23 |
C22 |
H10 |
180.0 |
179.8 |
| C05 |
C21 |
C22 |
H9 |
180.0 |
180.3 |
| C23 |
C22 |
C21 |
H10 |
180.0 |
179.9 |
| C23 |
C22 |
C21 |
H9 |
180.0 |
179.9 |
| C21 |
C22 |
C23 |
H10 |
180.0 |
180.1 |
| C09 |
C10 |
H1 |
C11 |
180.0 |
180.3 |
| H1 |
C10 |
C09 |
C08 |
180.0 |
179.7 |
| H1 |
C10 |
C09 |
H18 |
0.0 |
359.7 |
| H1 |
C10 |
C11 |
C14 |
180.0 |
180.3 |
| O12 |
C13 |
H2 |
H3 |
120.0 |
120.0 |
| O12 |
C13 |
H2 |
H4 |
240.0 |
240.1 |
| H3 |
C13 |
H2 |
H4 |
120.0 |
120.0 |
| O12 |
C13 |
H3 |
H2 |
239.9 |
240.0 |
| O12 |
C13 |
H3 |
H4 |
120.0 |
119.9 |
| H2 |
C13 |
H3 |
H4 |
240.1 |
239.9 |
| O12 |
C13 |
H4 |
H2 |
120.0 |
120.0 |
| O12 |
C13 |
H4 |
H3 |
240.0 |
240.1 |
| H2 |
C13 |
H4 |
H3 |
120.0 |
120.1 |
| H6 |
C20 |
C18 |
O19 |
360.0 |
0.1 |
| H6 |
C20 |
C18 |
O17 |
180.3 |
180.0 |
| C18 |
C20 |
H6 |
H7 |
120.0 |
119.9 |
| C18 |
C20 |
H6 |
H8 |
240.0 |
239.9 |
| H7 |
C20 |
H6 |
H8 |
120.0 |
120.0 |
| H7 |
C20 |
C18 |
O19 |
120.0 |
120.0 |
| H7 |
C20 |
C18 |
O17 |
300.3 |
299.9 |
| C18 |
C20 |
H7 |
H6 |
240.0 |
240.1 |
| C18 |
C20 |
H7 |
H8 |
120.0 |
120.1 |
| H6 |
C20 |
H7 |
H8 |
240.0 |
240.0 |
| H8 |
C20 |
C18 |
O19 |
240.0 |
240.0 |
| H8 |
C20 |
C18 |
O17 |
60.3 |
60.0 |
| C18 |
C20 |
H8 |
H6 |
120.0 |
120.0 |
| C18 |
C20 |
H8 |
H7 |
240.0 |
240.0 |
| H6 |
C20 |
H8 |
H7 |
120.0 |
120.0 |
| H9 |
C21 |
C22 |
H10 |
360.0 |
360.0 |
| H10 |
C22 |
C21 |
H9 |
360.0 |
360.0 |
| C04 |
C24 |
H11 |
C23 |
180.0 |
180.6 |
| H11 |
C24 |
C23 |
H21 |
0.4 |
0.7 |
| N27 |
C26 |
H12 |
H13 |
119.4 |
240.0 |
| H12 |
C26 |
C25 |
N03 |
350.2 |
300.0 |
| C25 |
C26 |
H12 |
H13 |
240.5 |
120.0 |
| H12 |
C26 |
C25 |
H22 |
230.0 |
60.1 |
| H12 |
C26 |
C25 |
H23 |
110.3 |
180.0 |
| N27 |
C26 |
H13 |
H12 |
240.5 |
119.9 |
| H13 |
C26 |
C25 |
N03 |
230.5 |
60.0 |
| C25 |
C26 |
H13 |
H12 |
119.5 |
240.0 |
| H13 |
C26 |
C25 |
H22 |
110.3 |
180.0 |
| H13 |
C26 |
C25 |
H23 |
350.6 |
300.0 |
| H14 |
C28 |
N27 |
C29 |
180.0 |
60.0 |
| N27 |
C28 |
H14 |
H15 |
120.0 |
120.0 |
| N27 |
C28 |
H14 |
H16 |
240.0 |
240.0 |
| H15 |
C28 |
H14 |
H16 |
120.0 |
120.0 |
| H15 |
C28 |
N27 |
C29 |
300.0 |
180.0 |
| N27 |
C28 |
H15 |
H14 |
240.0 |
240.0 |
| N27 |
C28 |
H15 |
H16 |
120.0 |
120.0 |
| H14 |
C28 |
H15 |
H16 |
240.0 |
240.0 |
| H16 |
C28 |
N27 |
C29 |
60.0 |
300.0 |
| N27 |
C28 |
H16 |
H14 |
120.0 |
120.0 |
| N27 |
C28 |
H16 |
H15 |
240.0 |
240.0 |
| H14 |
C28 |
H16 |
H15 |
120.0 |
120.0 |
| H18 |
C09 |
C10 |
C11 |
180.0 |
180.0 |
| C10 |
C09 |
H18 |
C08 |
180.0 |
180.1 |
| H18 |
C09 |
C10 |
H1 |
0.0 |
359.7 |
| H19 |
C14 |
C15 |
H5 |
0.0 |
0.0 |
| H20 |
C16 |
C07 |
H17 |
307.5 |
318.8 |
| H21 |
C23 |
C24 |
H11 |
0.4 |
0.7 |
| H21 |
C23 |
C22 |
H10 |
0.0 |
359.2 |
| C26 |
C25 |
H22 |
N03 |
120.8 |
240.0 |
| N03 |
C25 |
H22 |
H23 |
119.6 |
240.0 |
| H22 |
C25 |
C26 |
H12 |
230.0 |
60.1 |
| H22 |
C25 |
C26 |
H13 |
110.3 |
180.0 |
| C26 |
C25 |
H22 |
H23 |
240.4 |
120.0 |
| C26 |
C25 |
H23 |
N03 |
239.2 |
120.0 |
| N03 |
C25 |
H23 |
H22 |
240.4 |
120.1 |
| H23 |
C25 |
C26 |
H12 |
110.3 |
180.0 |
| H23 |
C25 |
C26 |
H13 |
350.6 |
300.0 |
| C26 |
C25 |
H23 |
H22 |
119.6 |
240.0 |
| N27 |
C29 |
H25 |
H26 |
120.0 |
120.0 |
| N27 |
C29 |
H25 |
H27 |
240.0 |
240.0 |
| H26 |
C29 |
H25 |
H27 |
120.0 |
120.0 |
| N27 |
C29 |
H26 |
H25 |
240.0 |
240.0 |
| N27 |
C29 |
H26 |
H27 |
120.0 |
120.0 |
| H25 |
C29 |
H26 |
H27 |
240.0 |
240.0 |
| N27 |
C29 |
H27 |
H25 |
120.0 |
119.9 |
| N27 |
C29 |
H27 |
H26 |
240.0 |
240.0 |
| H25 |
C29 |
H27 |
H26 |
120.0 |
120.0 |