PDB Chemical Component C9E
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for C9E
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C5 |
C6 |
1.396 |
1.383 |
C5 |
N1 |
1.344 |
1.316 |
C6 |
C8 |
1.417 |
1.397 |
O2 |
C4 |
1.231 |
1.215 |
N1 |
C1 |
1.344 |
1.324 |
C8 |
C4 |
1.516 |
1.476 |
C8 |
C9 |
1.404 |
1.410 |
C4 |
O1 |
1.387 |
1.347 |
C1 |
C9 |
1.433 |
1.410 |
C1 |
N2 |
1.362 |
1.375 |
C9 |
C7 |
1.441 |
1.459 |
O1 |
C3 |
1.425 |
1.453 |
C3 |
C2 |
1.524 |
1.530 |
N2 |
C10 |
1.373 |
1.367 |
C7 |
C10 |
1.397 |
1.346 |
C2 |
H1 |
1.100 |
1.090 |
C2 |
H2 |
1.100 |
1.090 |
C2 |
H3 |
1.100 |
1.091 |
C3 |
H4 |
1.100 |
1.090 |
C3 |
H5 |
1.100 |
1.090 |
C7 |
H6 |
1.080 |
1.079 |
C10 |
H7 |
1.079 |
1.080 |
N2 |
H8 |
1.000 |
0.970 |
C5 |
H9 |
1.080 |
1.080 |
C6 |
H10 |
1.080 |
1.080 |
Bond Angles for C9E
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C5 |
H9 |
118.5 |
119.1 |
C5 |
C6 |
H10 |
118.6 |
120.4 |
C6 |
C8 |
C4 |
124.1 |
121.2 |
O2 |
C4 |
O1 |
113.4 |
120.0 |
N1 |
C1 |
N2 |
124.7 |
133.2 |
C9 |
C8 |
C4 |
120.6 |
121.1 |
C8 |
C4 |
O1 |
123.2 |
120.0 |
C1 |
C9 |
C8 |
116.9 |
119.3 |
C9 |
C1 |
N2 |
107.5 |
106.9 |
C1 |
C9 |
C7 |
105.9 |
106.3 |
C1 |
N2 |
C10 |
111.2 |
110.0 |
C1 |
N2 |
H8 |
124.4 |
125.0 |
C9 |
C7 |
C10 |
107.7 |
106.8 |
C9 |
C7 |
H6 |
126.1 |
126.6 |
O1 |
C3 |
H4 |
109.2 |
109.4 |
O1 |
C3 |
H5 |
109.2 |
109.5 |
C3 |
C2 |
H1 |
109.5 |
109.5 |
C3 |
C2 |
H2 |
109.5 |
109.5 |
C3 |
C2 |
H3 |
109.5 |
109.5 |
N2 |
C10 |
H7 |
126.1 |
125.1 |
C10 |
C7 |
H6 |
126.2 |
126.6 |
C7 |
C10 |
H7 |
126.2 |
125.0 |
H1 |
C2 |
H2 |
109.4 |
109.5 |
H1 |
C2 |
H3 |
109.5 |
109.5 |
H2 |
C2 |
H3 |
109.5 |
109.4 |
H4 |
C3 |
H5 |
109.5 |
109.4 |
Torsion Angles for C9E
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C5 |
C6 |
C8 |
C4 |
178.2 |
180.0 |
C9 |
C8 |
C6 |
C4 |
179.9 |
180.3 |
C6 |
C8 |
C4 |
O1 |
217.3 |
0.3 |
C8 |
C4 |
O2 |
O1 |
210.9 |
179.9 |
C9 |
C1 |
N1 |
N2 |
182.0 |
179.7 |
N1 |
C1 |
N2 |
C10 |
180.6 |
179.7 |
N1 |
C1 |
N2 |
H8 |
0.5 |
359.7 |
O2 |
C4 |
C8 |
O1 |
145.7 |
180.1 |
C1 |
C9 |
C8 |
C4 |
182.2 |
180.0 |
C6 |
C8 |
C9 |
C4 |
180.1 |
179.7 |
C9 |
C8 |
C4 |
O1 |
37.4 |
180.0 |
C8 |
C9 |
C1 |
N2 |
178.8 |
179.9 |
C1 |
C9 |
C8 |
C7 |
183.9 |
180.2 |
C8 |
C9 |
C7 |
C10 |
182.2 |
180.1 |
C8 |
C9 |
C7 |
H6 |
2.2 |
0.1 |
C4 |
O1 |
C3 |
H4 |
264.3 |
60.1 |
C4 |
O1 |
C3 |
H5 |
23.9 |
300.1 |
N1 |
C1 |
C9 |
N2 |
178.2 |
180.2 |
C9 |
C1 |
N2 |
C10 |
358.9 |
360.0 |
C9 |
C1 |
N2 |
H8 |
178.8 |
179.9 |
C1 |
C9 |
C7 |
C10 |
358.6 |
359.9 |
C1 |
C9 |
C7 |
H6 |
178.6 |
180.0 |
N2 |
C1 |
C9 |
C8 |
178.8 |
179.9 |
N2 |
C1 |
C9 |
C7 |
1.5 |
0.1 |
C1 |
N2 |
C10 |
H7 |
180.3 |
180.0 |
C1 |
C9 |
C7 |
C8 |
176.4 |
179.8 |
C7 |
C9 |
C1 |
N2 |
1.5 |
0.1 |
C10 |
C7 |
C9 |
H6 |
180.0 |
180.0 |
C9 |
C7 |
C10 |
H7 |
180.7 |
180.0 |
O1 |
C3 |
C2 |
H1 |
180.0 |
300.0 |
O1 |
C3 |
C2 |
H2 |
300.0 |
60.1 |
O1 |
C3 |
C2 |
H3 |
60.0 |
180.0 |
H4 |
C3 |
O1 |
H5 |
240.3 |
120.0 |
H1 |
C2 |
C3 |
H2 |
240.0 |
239.9 |
H1 |
C2 |
C3 |
H3 |
120.0 |
120.0 |
H2 |
C2 |
C3 |
H3 |
240.0 |
240.1 |
C1 |
N2 |
C10 |
H8 |
180.0 |
180.0 |
N2 |
C10 |
C7 |
H6 |
180.7 |
180.0 |
C7 |
C10 |
N2 |
H7 |
180.0 |
180.0 |
C1 |
N2 |
C10 |
C7 |
0.3 |
0.0 |
C9 |
C7 |
C10 |
H6 |
180.0 |
180.0 |
N2 |
C10 |
C7 |
H7 |
180.0 |
180.0 |
C3 |
C2 |
H1 |
H2 |
120.0 |
120.0 |
C3 |
C2 |
H1 |
H3 |
240.0 |
240.0 |
H2 |
C2 |
H1 |
H3 |
120.0 |
120.0 |
C3 |
C2 |
H2 |
H1 |
240.0 |
240.0 |
C3 |
C2 |
H2 |
H3 |
120.0 |
120.0 |
H1 |
C2 |
H2 |
H3 |
240.0 |
240.0 |
C3 |
C2 |
H3 |
H1 |
120.0 |
120.0 |
C3 |
C2 |
H3 |
H2 |
240.0 |
240.0 |
H1 |
C2 |
H3 |
H2 |
120.0 |
120.0 |
O1 |
C3 |
H4 |
H5 |
119.5 |
240.0 |
H4 |
C3 |
C2 |
H1 |
59.8 |
59.9 |
H4 |
C3 |
C2 |
H2 |
179.8 |
180.0 |
H4 |
C3 |
C2 |
H3 |
299.9 |
299.9 |
O1 |
C3 |
H5 |
H4 |
240.5 |
119.9 |
H5 |
C3 |
C2 |
H1 |
300.2 |
179.9 |
H5 |
C3 |
C2 |
H2 |
60.2 |
300.0 |
H5 |
C3 |
C2 |
H3 |
180.2 |
59.9 |
C9 |
C7 |
H6 |
C10 |
180.0 |
180.0 |
H6 |
C7 |
C10 |
H7 |
0.7 |
0.0 |
H7 |
C10 |
C7 |
H6 |
0.7 |
0.0 |
C1 |
N2 |
H8 |
C10 |
180.0 |
180.0 |
H8 |
N2 |
C10 |
H7 |
0.3 |
0.0 |
H9 |
C5 |
C6 |
H10 |
1.7 |
0.3 |
H10 |
C6 |
C5 |
H9 |
1.7 |
0.3 |
H10 |
C6 |
C8 |
C4 |
358.2 |
359.8 |