PDB Chemical Component C8R

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C8R

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O2A	PA	1.500	1.500
O1A	PA	1.507	1.507
C5'	C4'	1.524	1.524
C5'	O5'	1.423	1.423
PA	O5'	1.596	1.596
PA	O3A	1.632	1.632
C4'	O4'	1.431	1.431
C4'	C3'	1.514	1.514
O4'	C1'	1.433	1.433
O3A	PB	1.623	1.623
N8	C8	1.351	1.351
C1'	N9	1.465	1.465
C1'	C2'	1.515	1.515
O3'	C3'	1.426	1.426
C3'	C2'	1.517	1.517
O2'	C2'	1.425	1.425
C8	N9	1.337	1.337
C8	N7	1.337	1.337
N9	C4	1.330	1.330
PB	O1B	1.526	1.526
PB	O2B	1.515	1.515
PB	O5D	1.616	1.616
N7	C5	1.348	1.348
O5D	C5D	1.437	1.437
C4	C5	1.471	1.471
C4	N3	1.360	1.360
C5D	C4D	1.533	1.533
C5	C6	1.468	1.468
N3	C2	1.345	1.345
C2	N1	1.345	1.345
C6	N1	1.407	1.407
C6	O6	1.339	1.339
C4D	C3D	1.520	1.520
C4D	O4D	1.439	1.439
C3D	O3D	1.436	1.436
C3D	C2D	1.524	1.524
N1	C1D	1.475	1.475
C2D	C1D	1.526	1.526
C2D	O2D	1.433	1.433
O4D	C1D	1.435	1.435
C2	H1	1.080	1.080
N8	H2	1.000	1.000
N8	H3	1.000	1.000
C1'	H4	1.100	1.100
O1A	H5	0.950	0.950
C1D	H6	1.100	1.100
C2'	H7	1.100	1.100
O2'	H8	0.950	0.950
O2B	H9	0.950	0.950
C2D	H10	1.100	1.100
O2D	H11	0.950	0.950
C3'	H12	1.100	1.100
O3'	H13	0.950	0.950
C3D	H14	1.100	1.100
O3D	H15	0.950	0.950
C4'	H16	1.100	1.100
C4D	H17	1.100	1.100
C5'	H18	1.100	1.100
C5'	H19	1.100	1.100
C5D	H20	1.100	1.100
C5D	H21	1.100	1.100

Bond Angles for C8R

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O2A	PA	O5'	109.6	109.6
O2A	PA	O3A	105.1	105.1
O1A	PA	O5'	110.4	110.4
O1A	PA	O3A	110.8	110.8
C5'	C4'	H16	108.1	108.1
PA	O5'	C5'	117.0	117.0
O5'	C5'	H18	108.9	108.9
O5'	C5'	H19	108.9	108.9
O3A	PA	O5'	102.6	102.6
PA	O3A	PB	127.8	127.8
O4'	C4'	H16	109.3	109.3
C4'	C3'	H12	110.3	110.3
O4'	C1'	H4	112.3	112.3
O3A	PB	O5D	101.5	101.5
N8	C8	N9	123.1	123.1
C2'	C1'	H4	111.1	111.1
C1'	C2'	H7	111.7	111.7
O3'	C3'	H12	111.7	111.7
C3'	C2'	H7	111.6	111.6
O2'	C2'	H7	113.1	113.1
O1B	PB	O2B	121.2	121.2
O1B	PB	O5D	108.1	108.1
O2B	PB	O5D	108.7	108.7
PB	O2B	H9	109.5	109.5
PB	O5D	C5D	120.4	120.4
O5D	C5D	H20	108.4	108.4
O5D	C5D	H21	108.4	108.4
C4	C5	C6	116.5	116.5
C5D	C4D	H17	108.9	108.9
C5	C6	O6	118.6	118.6
N3	C2	H1	117.9	117.9
C2	N1	C1D	119.2	119.2
C6	N1	C1D	120.9	120.9
C4D	C3D	H14	109.7	109.7
O4D	C4D	H17	110.2	110.2
O3D	C3D	H14	110.9	110.9
C3D	O3D	H15	109.5	109.5
C3D	C2D	H10	108.9	108.9
N1	C1D	H6	113.7	113.7
C2D	C1D	H6	112.8	112.8
O2D	C2D	H10	110.2	110.2
C2D	O2D	H11	109.5	109.5
O4D	C1D	H6	114.4	114.4
H2	N8	H3	109.4	109.4
H18	C5'	H19	109.5	109.5
H20	C5D	H21	109.5	109.5

Torsion Angles for C8R

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1A	PA	O2A	O5'	233.2	233.2
O1A	PA	O2A	O3A	123.6	123.6
O2A	PA	O5'	C5'	292.4	292.4
O3A	PA	O2A	O5'	109.6	109.6
O2A	PA	O3A	PB	182.5	182.5
O2A	PA	O1A	O5'	126.4	126.4
O2A	PA	O1A	O3A	239.4	239.4
O1A	PA	O5'	C5'	63.0	63.0
O3A	PA	O1A	O5'	247.1	247.1
O1A	PA	O3A	PB	54.9	54.9
PA	O5'	C5'	C4'	188.8	188.8
O4'	C4'	C5'	H16	121.1	121.2
C5'	C4'	C3'	H12	318.0	318.0
O5'	C5'	C4'	H16	165.6	165.6
O3A	PA	O5'	C5'	181.1	181.1
H18	C5'	O5'	H19	119.3	119.3
O2A	PA	O5'	O3A	111.3	111.3
O1A	PA	O5'	O3A	241.9	241.9
PA	O5'	C5'	H18	68.4	68.4
PA	O5'	C5'	H19	309.1	309.1
O5'	PA	O3A	PB	297.0	297.0
O2A	PA	O3A	O5'	245.4	245.4
O1A	PA	O3A	O5'	117.8	117.8
PA	O3A	PB	O5D	102.0	102.0
C5'	C4'	O4'	H16	239.5	239.5
O4'	C4'	C3'	H12	81.6	81.6
C4'	O4'	C1'	H4	101.8	101.8
O3'	C3'	C4'	H12	124.0	124.0
C4'	C3'	C2'	H7	145.1	145.1
C2'	C1'	O4'	H4	238.4	238.4
O4'	C1'	C2'	H7	235.0	235.0
PB	O3A	PA	O5'	297.0	297.0
O1B	PB	O3A	O5D	245.1	245.1
O2B	PB	O3A	O5D	112.9	112.9
O3A	PB	O2B	H9	126.3	126.3
O3A	PB	O5D	C5D	64.7	64.7
O4'	C1'	C2'	H4	122.4	122.4
C3'	C2'	C1'	H7	121.4	121.4
O2'	C2'	C1'	H7	236.6	236.6
C4'	C3'	O3'	H12	236.8	236.8
O3'	C3'	C2'	H7	263.2	263.2
C3'	C2'	C1'	H4	234.0	234.0
C1'	C2'	C3'	H7	238.5	238.5
O2'	C2'	C3'	H7	125.4	125.4
O2'	C2'	C1'	H4	349.2	349.2
C1'	C2'	O2'	H7	122.5	122.5
C3'	C2'	O2'	H7	235.4	235.4
PA	O3A	PB	O1B	347.1	347.1
O3A	PB	O1B	O5D	110.7	110.7
O2B	PB	O1B	O5D	233.6	233.6
O1B	PB	O2B	H9	360.0	360.0
O1B	PB	O5D	C5D	182.0	182.0
PA	O3A	PB	O2B	214.9	214.9
O3A	PB	O2B	O5D	252.3	252.3
O1B	PB	O2B	O5D	126.1	126.1
O2B	PB	O5D	C5D	315.3	315.3
O1B	PB	O5D	O2B	226.7	226.7
O5D	PB	O2B	H9	233.9	233.9
PB	O5D	C5D	H20	233.6	233.6
PB	O5D	C5D	H21	352.3	352.3
O5D	C5D	C4D	H17	281.6	281.6
H20	C5D	O5D	H21	241.3	241.3
C4	C5	C6	O6	178.9	178.9
C4	N3	C2	H1	179.8	179.8
PB	O5D	C5D	C4D	113.0	113.0
C5D	C4D	C3D	H14	11.8	11.8
O4D	C4D	C5D	H17	123.8	123.8
C5	C6	N1	C1D	181.8	181.8
N3	C2	N1	C1D	177.8	177.8
C6	N1	C2	C1D	182.6	182.6
C2	N1	C1D	H6	101.2	101.2
C2	N1	C6	C1D	177.4	177.4
C6	N1	C1D	H6	278.6	278.6
O6	C6	N1	C1D	4.0	4.0
O3D	C3D	C4D	H14	121.8	121.8
C4D	C3D	O3D	H15	180.0	180.0
C4D	C3D	C2D	H10	115.2	115.2
C5D	C4D	O4D	H17	236.9	236.9
O4D	C4D	C3D	H14	134.9	134.9
C4D	O4D	C1D	H6	148.3	148.3
C4D	C3D	O3D	H14	238.9	238.9
O3D	C3D	C2D	H10	233.7	233.7
C3D	C2D	C1D	H6	223.1	223.1
O2D	C2D	C3D	H10	120.8	120.8
C3D	C2D	O2D	H11	180.0	180.0
C2D	C1D	N1	H6	124.8	124.8
O4D	C1D	N1	H6	234.3	234.3
N1	C1D	C2D	H6	234.7	234.7
O4D	C1D	C2D	H6	124.3	124.3
C3D	C2D	O2D	H10	239.9	239.9
O2D	C2D	C1D	H6	343.5	343.5
N1	C1D	O4D	H6	125.2	125.2
C2D	C1D	O4D	H6	236.7	236.7
H1	C2	N1	C1D	357.8	357.8
H2	N8	C8	N9	180.2	180.2
H3	N8	C8	N9	300.2	300.2
H4	C1'	C2'	H7	112.6	112.6
H5	O1A	PA	O5'	233.6	233.6
H5	O1A	PA	O3A	120.6	120.6
H7	C2'	C1'	H4	112.6	112.6
H8	O2'	C2'	H7	57.5	57.5
H9	O2B	PB	O5D	233.9	233.9
H10	C2D	C1D	H6	105.1	105.1
H10	C2D	O2D	H11	300.1	300.1
H11	O2D	C2D	H10	300.1	300.1
H12	C3'	C2'	H7	27.8	27.8
H13	O3'	C3'	H12	303.2	303.2
H14	C3D	O3D	H15	301.1	301.1
H14	C3D	C2D	H10	357.5	357.5
H15	O3D	C3D	H14	301.1	301.1
H16	C4'	C3'	H12	197.9	197.8
H17	C4D	C3D	H14	253.1	253.1
H18	C5'	C4'	H16	285.9	285.9
O5'	C5'	H18	H19	241.1	241.1
H19	C5'	C4'	H16	45.3	45.2
O5'	C5'	H19	H18	118.9	118.9
O5D	C5D	H20	H21	118.0	118.0
H20	C5D	C4D	H17	161.0	161.0
O5D	C5D	H21	H20	242.0	242.0
H21	C5D	C4D	H17	42.3	42.3