PDB Chemical Component C88

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C88

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
CAI	NAP	1.474	1.469
CAI	CAK	1.544	1.530
NAP	CAH	1.467	1.469
CAH	CAJ	1.535	1.531
CAK	CAY	1.540	1.532
CAY	CAJ	1.543	1.531
CAY	CAL	1.538	1.530
CAL	NAZ	1.488	1.465
N3	C2	1.326	1.315
N3	C4	1.349	1.333
C2	N1	1.332	1.322
NAZ	C4	1.338	1.364
NAZ	NAO	1.236	1.399
C4	C5	1.395	1.407
N1	C6	1.345	1.329
CAD	CAE	1.397	1.380
CAD	CAS	1.399	1.394
NAO	CAV	1.339	1.311
C5	C6	1.399	1.405
C5	CAV	1.400	1.463
C6	NAC	1.332	1.382
CAV	CAS	1.398	1.483
CAE	CAU	1.405	1.388
CAS	CAG	1.405	1.394
CAA	OAQ	1.443	1.429
CAU	OAQ	1.349	1.359
CAU	CAR	1.392	1.388
CAG	CAR	1.398	1.379
CAR	CAB	1.524	1.507
CAJ	H1	1.100	1.090
CAJ	H2	1.100	1.090
CAH	H3	1.100	1.090
CAH	H4	1.100	1.091
NAP	H5	1.000	1.009
CAI	H7	1.100	1.090
CAI	H8	1.100	1.090
CAK	H9	1.100	1.089
CAK	H10	1.100	1.090
CAY	H11	1.100	1.090
CAL	H12	1.100	1.090
CAL	H13	1.100	1.089
C2	H14	1.079	1.079
NAC	H15	1.000	0.970
NAC	H16	1.000	0.969
CAG	H17	1.080	1.080
CAB	H18	1.100	1.089
CAB	H19	1.100	1.090
CAB	H20	1.100	1.090
CAA	H21	1.100	1.091
CAA	H22	1.100	1.090
CAA	H23	1.100	1.090
CAE	H24	1.079	1.080
CAD	H25	1.080	1.079

Bond Angles for C88

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
CAI	NAP	H5	109.5	111.0
CAI	CAK	CAY	112.9	109.3
CAK	CAI	H7	109.3	109.5
CAK	CAI	H8	109.2	109.5
CAI	CAK	H9	108.6	109.5
CAI	CAK	H10	108.6	109.5
NAP	CAH	H3	109.8	109.5
NAP	CAH	H4	109.7	109.4
CAH	CAJ	H1	108.8	109.5
CAH	CAJ	H2	108.7	109.5
CAK	CAY	CAL	109.3	109.5
CAY	CAK	H9	108.6	109.4
CAY	CAK	H10	108.6	109.5
CAK	CAY	H11	110.0	109.5
CAY	CAJ	H1	108.7	109.5
CAY	CAJ	H2	108.7	109.5
CAY	CAL	NAZ	118.2	109.5
CAL	CAY	H11	110.0	109.6
CAY	CAL	H12	107.2	109.4
CAY	CAL	H13	107.3	109.5
CAL	NAZ	C4	126.4	125.3
CAL	NAZ	NAO	122.1	125.3
NAZ	CAL	H12	107.3	109.5
NAZ	CAL	H13	107.2	109.5
N3	C2	N1	121.7	122.7
N3	C2	H14	119.2	118.7
N3	C4	C5	119.7	118.7
C2	N1	C6	121.1	121.1
N1	C2	H14	119.2	118.7
NAO	NAZ	C4	111.4	109.4
NAZ	C4	C5	106.6	106.9
NAZ	NAO	CAV	111.0	109.9
C4	C5	C6	118.0	118.5
C4	C5	CAV	104.2	106.4
N1	C6	NAC	118.9	120.9
CAD	CAE	H24	120.1	119.9
NAO	CAV	C5	106.7	107.4
NAO	CAV	CAS	123.9	126.3
C5	CAV	CAS	129.3	126.3
C6	NAC	H15	109.5	120.0
C6	NAC	H16	109.5	120.0
CAV	CAS	CAG	119.7	120.1
CAS	CAG	CAR	120.8	120.0
CAS	CAG	H17	119.6	120.0
CAG	CAR	CAB	120.8	120.0
CAR	CAG	H17	119.6	120.0
CAR	CAB	H18	109.5	109.5
CAR	CAB	H19	109.5	109.4
CAR	CAB	H20	109.4	109.5
H1	CAJ	H2	109.4	109.5
H3	CAH	H4	109.5	109.5
H7	CAI	H8	109.5	109.4
H9	CAK	H10	109.5	109.6
H12	CAL	H13	109.5	109.4
H15	NAC	H16	109.5	120.0
H18	CAB	H19	109.4	109.5
H18	CAB	H20	109.5	109.5
H19	CAB	H20	109.5	109.5
H21	CAA	H22	109.5	109.5
H21	CAA	H23	109.4	109.5
H22	CAA	H23	109.5	109.5

Torsion Angles for C88

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
CAI	NAP	CAH	H3	53.7	178.2
CAI	NAP	CAH	H4	174.0	58.2
CAK	CAI	NAP	H5	183.6	185.8
CAI	CAK	CAY	CAL	164.5	177.6
CAY	CAK	CAI	H9	239.5	240.1
CAY	CAK	CAI	H10	120.5	119.9
CAI	CAK	CAY	H11	285.4	297.8
H7	CAI	CAK	H8	119.8	120.0
H9	CAK	CAI	H10	241.1	239.8
NAP	CAH	CAJ	H1	180.3	179.1
NAP	CAH	CAJ	H2	299.5	299.2
H3	CAH	NAP	H4	239.7	120.0
CAY	CAJ	CAH	H1	239.6	240.1
CAY	CAJ	CAH	H2	120.5	120.0
H1	CAJ	CAH	H2	240.9	239.9
CAY	CAK	CAI	H7	185.9	180.8
CAY	CAK	CAI	H8	66.2	60.9
CAI	CAK	CAY	H9	120.5	119.9
CAI	CAK	CAY	H10	239.5	240.0
CAK	CAY	CAJ	H1	189.8	182.5
CAK	CAY	CAJ	H2	70.7	62.4
CAK	CAY	CAL	NAZ	70.2	175.0
CAL	CAY	CAK	H11	239.1	239.8
CAK	CAY	CAL	H12	191.5	295.0
CAK	CAY	CAL	H13	309.0	54.9
H9	CAK	CAY	H10	119.0	120.1
CAH	CAJ	CAY	H1	120.5	119.9
CAH	CAJ	CAY	H2	239.5	240.0
H1	CAJ	CAY	H2	119.1	120.1
CAL	CAY	CAK	H9	44.0	57.6
CAL	CAY	CAK	H10	285.0	297.5
CAK	CAY	CAL	H11	120.9	120.1
CAL	CAY	CAJ	H1	70.9	62.5
CAL	CAY	CAJ	H2	311.8	302.5
CAY	CAL	NAZ	C4	66.9	89.9
CAY	CAL	NAZ	NAO	242.3	270.3
NAZ	CAL	CAY	H12	238.7	240.0
NAZ	CAL	CAY	H13	121.2	120.1
H12	CAL	CAY	H13	242.5	240.1
NAZ	CAL	CAY	H11	309.3	54.9
CAY	CAL	NAZ	H12	121.2	120.0
CAY	CAL	NAZ	H13	238.8	240.0
NAO	NAZ	CAL	C4	175.4	180.4
CAL	NAZ	C4	C5	176.7	180.1
CAL	NAZ	NAO	CAV	182.1	179.9
H12	CAL	NAZ	H13	117.5	120.0
C2	N3	C4	C5	1.6	360.0
N3	C2	N1	C6	359.7	359.9
N1	C2	N3	H14	180.0	180.0
NAZ	C4	N3	C5	179.5	180.0
N3	C4	C5	C6	358.7	360.0
N3	C4	C5	CAV	180.1	180.2
N3	C2	N1	H14	180.0	180.0
C2	N1	C6	NAC	180.0	180.1
CAL	NAZ	C4	NAO	175.9	180.3
C4	NAZ	CAL	H12	305.6	330.0
C4	NAZ	CAL	H13	188.1	210.0
N3	C4	NAZ	C5	180.4	180.0
C4	NAZ	NAO	CAV	358.1	0.2
NAZ	C4	C5	C6	179.1	180.0
NAZ	C4	C5	CAV	0.4	0.2
CAL	NAZ	NAO	C4	183.9	179.7
NAO	NAZ	CAL	H12	121.1	150.3
NAO	NAZ	CAL	H13	3.5	30.4
NAO	NAZ	C4	C5	0.8	359.8
NAZ	NAO	CAV	C5	2.1	359.9
NAZ	NAO	CAV	CAS	178.1	180.0
NAO	CAV	C5	C4	358.5	360.0
C4	C5	CAV	CAS	182.8	179.9
C6	N1	C2	H14	179.7	180.0
C4	C5	C6	N1	0.2	0.0
N1	C6	NAC	H15	360.0	16.6
N1	C6	NAC	H16	120.0	196.6
CAD	CAS	CAG	H17	183.0	180.3
CAV	NAO	NAZ	C4	358.1	0.2
C4	C5	CAV	NAO	358.5	360.0
C5	CAV	NAO	CAS	184.0	179.9
NAO	CAV	CAS	CAG	234.3	224.5
C4	C5	C6	CAV	182.0	180.2
NAO	CAV	C5	C6	180.3	180.2
C5	C6	NAC	H15	179.4	196.6
C5	C6	NAC	H16	299.4	16.7
C4	C5	CAV	C6	178.2	179.8
NAO	CAV	C5	CAS	175.7	180.1
C5	CAV	CAS	CAG	49.4	44.7
C4	C5	C6	NAC	180.8	180.0
H15	NAC	C6	H16	240.0	179.9
NAO	CAV	CAS	C5	184.9	179.9
CAV	CAS	CAG	CAR	176.4	179.9
CAV	CAS	CAG	H17	356.5	360.0
CAS	CAG	CAR	CAB	177.8	180.0
CAR	CAG	CAS	H17	180.0	180.0
CAU	CAR	CAG	H17	178.5	180.0
CAU	CAR	CAB	H18	89.7	270.0
CAU	CAR	CAB	H19	209.7	30.0
CAU	CAR	CAB	H20	329.7	150.0
CAS	CAG	CAR	H17	180.0	180.0
CAG	CAR	CAB	H18	270.4	90.0
CAG	CAR	CAB	H19	30.3	210.0
CAG	CAR	CAB	H20	150.3	330.0
CAB	CAR	CAG	H17	357.8	360.0
H18	CAB	CAR	H19	240.0	240.0
H18	CAB	CAR	H20	120.0	120.0
H19	CAB	CAR	H20	240.0	240.0
CAH	CAJ	H1	H2	118.7	120.1
CAY	CAJ	H1	H2	241.3	239.9
CAH	CAJ	H2	H1	241.3	240.0
CAY	CAJ	H2	H1	118.6	120.1
NAP	CAH	H3	H4	120.5	240.1
H3	CAH	CAJ	H1	60.5	299.1
H3	CAH	CAJ	H2	179.6	59.2
NAP	CAH	H4	H3	239.5	120.0
H4	CAH	CAJ	H1	300.2	59.2
H4	CAH	CAJ	H2	59.3	179.2
H5	NAP	CAH	H3	293.7	54.2
H5	NAP	CAH	H4	54.0	294.2
H7	CAI	NAP	H5	303.7	305.8
H7	CAI	CAK	CAY	185.9	180.8
CAK	CAI	H7	H8	240.4	240.0
H7	CAI	CAK	H9	306.5	300.7
H7	CAI	CAK	H10	65.4	60.9
H8	CAI	NAP	H5	63.5	65.8
H8	CAI	CAK	CAY	66.2	60.9
CAK	CAI	H8	H7	119.6	120.0
H8	CAI	CAK	H9	186.7	180.8
H8	CAI	CAK	H10	305.6	300.9
CAI	CAK	H9	CAY	236.8	240.2
H9	CAK	CAI	H7	306.5	300.7
H9	CAK	CAI	H8	186.7	180.8
CAI	CAK	H9	H10	118.4	120.1
H9	CAK	CAY	CAL	44.0	57.6
CAY	CAK	H9	H10	241.6	239.9
H9	CAK	CAY	H11	164.9	177.9
CAI	CAK	H10	CAY	123.2	119.8
H10	CAK	CAI	H7	65.4	60.9
H10	CAK	CAI	H8	305.6	300.9
CAI	CAK	H10	H9	241.6	239.9
H10	CAK	CAY	CAL	285.0	297.5
CAY	CAK	H10	H9	118.4	120.0
H10	CAK	CAY	H11	46.0	57.8
CAK	CAY	H11	CAL	239.5	239.8
H11	CAY	CAK	H9	164.9	177.9
H11	CAY	CAK	H10	46.0	57.8
H11	CAY	CAJ	H1	310.9	302.3
H11	CAY	CAJ	H2	191.8	182.2
H11	CAY	CAL	NAZ	309.3	54.9
H11	CAY	CAL	H12	70.6	174.9
H11	CAY	CAL	H13	188.1	294.8
CAY	CAL	H12	NAZ	232.1	240.0
H12	CAL	CAY	H11	70.6	174.9
CAY	CAL	H12	H13	116.1	120.0
H12	CAL	NAZ	C4	305.6	330.0
H12	CAL	NAZ	NAO	121.1	150.3
NAZ	CAL	H12	H13	243.9	240.0
CAY	CAL	H13	NAZ	127.9	120.1
H13	CAL	CAY	H11	188.1	294.8
CAY	CAL	H13	H12	244.0	240.1
H13	CAL	NAZ	C4	188.1	210.0
H13	CAL	NAZ	NAO	3.5	30.4
NAZ	CAL	H13	H12	116.1	120.0
N3	C2	H14	N1	180.0	180.0
H14	C2	N1	C6	179.7	180.0
C6	NAC	H15	H16	120.0	180.1
C6	NAC	H16	H15	240.0	179.9
CAS	CAG	H17	CAR	180.0	180.0
H17	CAG	CAR	CAB	357.8	360.0
CAR	CAB	H18	H19	120.0	120.0
CAR	CAB	H18	H20	240.0	240.0
H19	CAB	H18	H20	120.0	120.1
CAR	CAB	H19	H18	240.0	240.0
CAR	CAB	H19	H20	120.0	120.0
H18	CAB	H19	H20	240.0	240.0
CAR	CAB	H20	H18	120.1	120.0
CAR	CAB	H20	H19	240.0	240.0
H18	CAB	H20	H19	119.9	120.1
H22	CAA	H21	H23	120.0	120.1
H21	CAA	H22	H23	240.1	239.9
H21	CAA	H23	H22	120.0	120.1
H25	CAD	CAE	H24	1.8	359.7