Atom Nomenclature for C7C

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for C7C

Atom Name (V3) Atom Name (V2)
CL CL
C1 C1
C2 C2
C3 C3
C6 C6
C5 C5
C4 C4
S8 S8
C9 C9
C13 C13
C14 C14
O15 O15
O16 O16
S10 S10
N11 N11
N12 N12
H2 H2
H6 H6
H3 H3
H5 H5