Atom Nomenclature for C72

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for C72

Atom Name (V3) Atom Name (V2)
C01 C01
C02 C02
S03 S03
C04 C04
C05 C05
C06 C06
C07 C07
N08 N08
C09 C09
N10 N10
C11 C11
C12 C12
C13 C13
C14 C14
N15 N15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
CL24 CL24
N25 N25
O26 O26
H01 H01
H07 H07
HN10 HN10
H13 H13
H14 H14
H14A H14A
HN15 HN15
H16 H16
H16A H16A
H17 H17
H17A H17A
H18 H18
H18A H18A
H19 H19
H20 H20
H22 H22
H23 H23
HN25 HN25
HN2A HN2A